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Showing 1–50 of 103 results
Advanced filters: Author: Alexander J. Beagle Clear advanced filters
  • Sexual dimorphism in genetic vulnerability to schizophrenia, systemic lupus erythematosus and Sjögren’s syndrome is linked to differential protein abundance from alleles of complement component 4.

    • Nolan Kamitaki
    • Aswin Sekar
    • Steven A. McCarroll
    Research
    Nature
    Volume: 582, P: 577-581
  • Durable agonism of NPR1 achieved with a novel investigational monoclonal antibody could mirror the positive hemodynamic changes in blood pressure and heart failure identified in humans with lifelong exposure to NPR1 coding variants.

    • Michael E. Dunn
    • Aaron Kithcart
    • Lori Morton
    ResearchOpen Access
    Nature
    Volume: 633, P: 654-661
  • Here, the authors analyze genetic and phenotypic data from Biobank Russia and describe unique admixture of populations. They provide insights into shared properties of inherited disease risks between European and Asian ancestries along with GWAS results across 464 traits.

    • Dmitrii Usoltsev
    • Nikita Kolosov
    • Mykyta Artomov
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-10
  • A novel covalent inhibitor, ISM3312, targets the main protease of multiple human coronaviruses, including drug-resistant strains, and shows broad antiviral activity. It offers a promising therapeutic strategy against current and future coronavirus threats.

    • Jing Sun
    • Deheng Sun
    • Jincun Zhao
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • Harnessing information from whole genome sequencing in 185 individuals, this study generates a high-resolution map of copy number variants. Nucleotide resolution of the map facilitates analysis of structural variant distribution and identification of the mechanisms of their origin. The study provides a resource for sequence-based association studies.

    • Ryan E. Mills
    • Klaudia Walter
    • Jan O. Korbel
    Research
    Nature
    Volume: 470, P: 59-65
  • Heeren et al study the evolutionary genomics of leishmaniasis in Peru and Bolivia to show that parasite hybridization increases the prevalence, diversity and spread of viruses that have been previously associated with disease severity and treatment failure.

    • Senne Heeren
    • Ilse Maes
    • Frederik Van den Broeck
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Current methods for detection of tuberculosis rely mostly on bacterial culture from sputum. Here, the authors provide preclinical evidence that a positron-emitting mimic of the disaccharide trehalose ([18F]FDT) can be used as a radiotracer for the imaging of tuberculosis-associated lesions and monitoring the effects of treatment.

    • R. M. Naseer Khan
    • Yong-Mo Ahn
    • Benjamin G. Davis
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-19
  • Four genome-wide associated loci are currently known for malaria susceptibility. Here, the authors expand on earlier work by combining data from 11 malaria-endemic countries and additional population sequencing informing an African-enriched imputation reference panel, with findings including a previously unreported association on chromosome 6.

    • Gavin Band
    • Quang Si Le
    • Dominic P. Kwiatkowski
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-19
  • High pathogenicity avian influenza virus has a wide host range and has been detected across a large geographic area. Here, the authors present evidence of spread to the Antarctic and sub-Antarctic regions, with signs of clinical infection and positive virus detection in birds and elephant seals.

    • Ashley C. Banyard
    • Ashley Bennison
    • Joe James
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-11
  • In this work, through a comprehensive proteomics approach, the authors identified host plasma protein biosignatures that could distinguish tuberculosis (TB) disease in children.

    • Andrea Fossati
    • Peter Wambi
    • Danielle L. Swaney
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • A genetic study identifies hundreds of loci associated with risk tolerance and risky behaviors, finds evidence of substantial shared genetic influences across these phenotypes, and implicates genes involved in neurotransmission.

    • Richard Karlsson Linnér
    • Pietro Biroli
    • Jonathan P. Beauchamp
    Research
    Nature Genetics
    Volume: 51, P: 245-257
  • Analysis of the blood DNA virome in patients with COVID-19 and autoimmune disease associates endogenous HHV-6 (eHHV-6) and high anellovirus load with increased disease risk, most notably for systemic lupus erythematosus. eHHV-6 carriers show a distinct immune response.

    • Noah Sasa
    • Shohei Kojima
    • Yukinori Okada
    ResearchOpen Access
    Nature Genetics
    Volume: 57, P: 65-79
  • Genome-wide analyses reveal a deep history of musical instruments and specialized vocabulary among Central African hunter-gatherers and the long-term cultural interconnectivity of these groups before and after the Bantu expansion.

    • Cecilia Padilla-Iglesias
    • Javier Blanco-Portillo
    • Andrea Bamberg Migliano
    ResearchOpen Access
    Nature Human Behaviour
    Volume: 8, P: 1263-1275
  • Cardiovascular diseases (CVD) are associated with plasma lipid levels. Here, Tabassum et al. perform genome-wide association studies for lipidomic profiles with 141 (non-standard) lipid species which highlights shared genetic loci with CVD and that traditional lipids have low genetic correlation with other lipids.

    • Rubina Tabassum
    • Joel T. Rämö
    • Samuli Ripatti
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-14
  • The bacterium Helicobacter pylori, often found in the human stomach, can be classified into distinct subpopulations associated with the geographic origin of the host. Here, the authors provide insights into H. pylori population structure by collecting over 1,000 clinical strains from 50 countries and generating and analyzing high-quality bacterial genome sequences.

    • Kaisa Thorell
    • Zilia Y. Muñoz-Ramírez
    • Charles S. Rabkin
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-16
  • Paul de Bakker, Cisca Wijmenga and colleagues report on The Genome of the Netherlands Project, including whole-genome sequencing of 769 individuals of Dutch ancestry from 250 parent-offspring families and construction of a phased haplotype map. Their intermediate-coverage population sequencing data set provides a complementary resource to other publicly available data sets, including the 1000 Genomes Project.

    • Laurent C Francioli
    • Androniki Menelaou
    • Cisca Wijmenga
    Research
    Nature Genetics
    Volume: 46, P: 818-825
  • The Consortium on Asthma among African-ancestry Populations in the Americas (CAAPA) aims to better understand population genetics of the African diaspora. Here, it uses deeply sequenced whole-genomes to describe the impact of admixture and potential disease burden of deleterious variants.

    • Rasika Ann Mathias
    • Margaret A. Taub
    • Kathleen C. Barnes
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-10
  • The goals, resources and design of the NHLBI Trans-Omics for Precision Medicine (TOPMed) programme are described, and analyses of rare variants detected in the first 53,831 samples provide insights into mutational processes and recent human evolutionary history.

    • Daniel Taliun
    • Daniel N. Harris
    • Gonçalo R. Abecasis
    ResearchOpen Access
    Nature
    Volume: 590, P: 290-299
  • An increase in the volume of the brain lateral ventricles is a sign of normal aging, but can also be associated with neurological and psychiatric disorders. Here, Vojinovic et al. identify seven genetic loci in a GWA study for ventricular volume in 23,500 individuals and find correlation with thalamus volume.

    • Dina Vojinovic
    • Hieab H. Adams
    • Myriam Fornage
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-11
  • A meta-analysis of genome-wide association studies of type 2 diabetes (T2D) identifies more than 600 T2D-associated loci; integrating physiological trait and single-cell chromatin accessibility data at these loci sheds light on heterogeneity within the T2D phenotype.

    • Ken Suzuki
    • Konstantinos Hatzikotoulas
    • Eleftheria Zeggini
    ResearchOpen Access
    Nature
    Volume: 627, P: 347-357
  • Maria Teresa Landi and colleagues identify a rare missense variant in POT1 shared by five melanoma-prone families from Italy and associated with increased telomere length and telomere fragility. They also identify additional familial melanoma cases with rare missense variants in POT1 and find a significant excess of rare exonic POT1 variants in melanoma cases compared to controls, implicating POT1 variants in melanoma susceptibility.

    • Jianxin Shi
    • Xiaohong R Yang
    • Maria Teresa Landi
    Research
    Nature Genetics
    Volume: 46, P: 482-486
  • Hepatitis C virus (HCV) infection blunts induction of hepcidin expression by bone morphogenetic protein 6 (BMP6), probably via TNF-mediated downregulation of the BMP co-receptor HJV, while BMP6 regulates a gene repertoire reminiscent of type I IFN signalling. BMP6 and related activin proteins potently block replication of HCV, hepatitis B virus and Zika virus independently of IFN.

    • Lucy A. Eddowes
    • Kinda Al-Hourani
    • Hal Drakesmith
    Research
    Nature Microbiology
    Volume: 4, P: 339-351
  • Several studies show that APOE-ε4 coding variants are associated with Alzheimer’s disease (AD) risk. Here, Zhou et al. perform fine-mapping of the APOE region and find AD risk haplotypes with non-coding variants in the PVRL2 and APOC1 regions that are associated with relevant endophenotypes.

    • Xiaopu Zhou
    • Yu Chen
    • Nancy Y. Ip
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-16
  • Genomic and epidemiologic analyses revealed that a novel reassortant viral lineage of the Oropouche virus, which has been circulating in the western Amazon region of Brazil for about a decade, is associated with the recent human outbreaks between 2022 and 2024.

    • Felipe Gomes Naveca
    • Tatiana Amaral Pires de Almeida
    • Gonzalo Bello
    Research
    Nature Medicine
    Volume: 30, P: 3509-3521
  • Genomic surveillance has been important for tracking the evolution and spread of SARS-CoV-2. Here, the authors analyse ~300,000 SARS-CoV-2 genomes from two years of sequencing in the Latin America and Caribbean regions and describe the emergence and spread of different lineages over time.

    • Tiago Gräf
    • Alexander A. Martinez
    • Juliana Almeida Leite
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-11
  • Chiea Chuen Khor, Tin Aung, Francesca Pasutto, Janey Wiggs and colleagues report a global genome-wide association study of exfoliation syndrome and a fine-mapping analysis of a previously identified disease-associated locus, LOXL1. They identify a rare protective variant in LOXL1 exclusive to the Japanese population and five new common variant susceptibility loci.

    • Tin Aung
    • Mineo Ozaki
    • Chiea Chuen Khor
    Research
    Nature Genetics
    Volume: 49, P: 993-1004
  • A genome-wide association study identifies 17 genetic loci that are associated with the risk of myeloproliferative neoplasms (MPNs), and shows that the modulation of haematopoietic stem cell function drives MPN risk.

    • Erik L. Bao
    • Satish K. Nandakumar
    • Vijay G. Sankaran
    Research
    Nature
    Volume: 586, P: 769-775
  • Here, the authors detect clade 2.3.4.4b H5N1 viruses in elephant seals associated with a mass mortality event in Argentina, show that the viruses belong to a clade primarily seen in marine mammals in South America and that they carry mammal-adaptation mutations suggestive of potential mammal-to-mammal transmission.

    • Marcela M. Uhart
    • Ralph E. T. Vanstreels
    • Agustina Rimondi
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • A genome-wide association study suggests 41 previously unreported loci on top of the 23 known loci that influence the disease risk for lumbar disc herniations. Many of these loci harbour genes implicated in disc structure and inflammation, as well as genes related to the nervous system and nerve function.

    • Ville Salo
    • Juhani Määttä
    • Johannes Kettunen
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • Jayavelu, Samaha et al., apply machine learning models on hospital admission data, including antibody titers and viral load, to identify patients at high risk for Long COVID. Low antibody levels, high viral loads, chronic diseases, and female sex are key predictors, supporting early, targeted interventions.

    • Naresh Doni Jayavelu
    • Hady Samaha
    • Matthew C. Altman
    ResearchOpen Access
    Communications Medicine
    Volume: 6, P: 1-10
  • Stephanie London, Martin Tobin and colleagues report meta-analyses of genome-wide association studies for forced vital capacity (FVC), a spirometric measure of pulmonary function that reflects lung volume. They identify six regions newly associated with FVC and demonstrate that candidate genes at these loci are expressed in lung tissue and primary lung cells.

    • Daan W Loth
    • María Soler Artigas
    • Stephanie J London
    Research
    Nature Genetics
    Volume: 46, P: 669-677
  • Anna Köttgen and colleagues report genome-wide association studies for serum urate in over 140,000 individuals from the Global Urate Genetics Consortium (GUGC). They identify 18 loci newly associated with serum urate concentrations and confirm 10 known loci, characterize their associations with gout and include a network analysis suggesting a role for inhibins-activins pathways in regulating urate homeostasis.

    • Anna Köttgen
    • Eva Albrecht
    • Christian Gieger
    Research
    Nature Genetics
    Volume: 45, P: 145-154
  • Spillover of the highly pathogenic avian influenza H5N1 virus to dairy cattle and the findings of a clinical, pathological and epidemiological investigation in nine affected farms are reported.

    • Leonardo C. Caserta
    • Elisha A. Frye
    • Diego G. Diel
    ResearchOpen Access
    Nature
    Volume: 634, P: 669-676
  • The hippocampus in mammalian brain varies in size across individuals. Here, Hibar and colleagues perform a genome-wide association meta-analysis to find six genetic loci with significant association to hippocampus volume.

    • Derrek P. Hibar
    • Hieab H. H. Adams
    • M. Arfan Ikram
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-12
  • The dynamics of SARS-CoV-2 transmission in the Middle East have been relatively under-studied. Here, the authors integrate genomic and travel data and show that introductions to the region were initially driven by intercontinental air travel, after which regional land travel became a more important driver.

    • Edyth Parker
    • Catelyn Anderson
    • Issa Abu-Dayyeh
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-14
  • In a GWAS study of 32,438 adults, the authors discovered five novel loci for intracranial volume and confirmed two known signals. Variants for intracranial volume were also related to childhood and adult cognitive function and to Parkinson's disease, and enriched near genes involved in growth pathways, including PI3K-AKT signaling.

    • Hieab H H Adams
    • Derrek P Hibar
    • Paul M Thompson
    Research
    Nature Neuroscience
    Volume: 19, P: 1569-1582
  • Here, the authors show structural, biochemical, and functional insights into the discovery of epichaperome‐ directed chemical probes for use in central nervous system diseases. Probes emerging from this work have translated to human clinical studies in Alzheimer’s disease and cancer.

    • Alexander Bolaender
    • Danuta Zatorska
    • Gabriela Chiosis
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-19