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Showing 151–200 of 810 results
Advanced filters: Author: Allison Broad Clear advanced filters
  • Here, the authors describe an early synziphosurine from the Lower Ordovician Fezouata Shale of Morocco, which exhibits traits that elucidate the long-contentious relationships between crown euchelicerates and their sister taxa, and also clarifies euchelicerate body plan evolution.

    • Lorenzo Lustri
    • Pierre Gueriau
    • Allison C. Daley
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • The Human Microbiome Project Consortium has established a population-scale framework to study a variety of microbial communities that exist throughout the human body, enabling the generation of a range of quality-controlled data as well as community resources.

    • Barbara A. Methé
    • Karen E. Nelson
    • Owen White
    ResearchOpen Access
    Nature
    Volume: 486, P: 215-221
  • Binding-activated optical sensors are powerful tools, but their development can be slow and laborious. Here, authors introduce a platform to expedite biosensor discovery and evolution using genetically encodable fluorogenic amino acids.

    • Erkin Kuru
    • Jonathan Rittichier
    • George M. Church
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • Pooling participant-level genetic data into a single analysis can result in variance stratification, reducing statistical performance. Here, the authors develop variant-specific inflation factors to assess variance stratification and apply this to pooled individual-level data from whole genome sequencing.

    • Tamar Sofer
    • Xiuwen Zheng
    • Kenneth M. Rice
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-14
  • Data from over 700,000 individuals reveal the identity of 83 sequence variants that affect human height, implicating new candidate genes and pathways as being involved in growth.

    • Eirini Marouli
    • Mariaelisa Graff
    • Guillaume Lettre
    Research
    Nature
    Volume: 542, P: 186-190
  • High-throughput cytometry generates complex single-cell data with challenging manual gating process. Here, authors introduce UNITO, a framework that transforms cell classification into image segmentation, outperforming existing methods in identifying cytometric subpopulations across diverse datasets.

    • Jiong Chen
    • Matei Ionita
    • Li Shen
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Large-scale screens of chemical and genetic vulnerabilities in cancer are typically limited to simple readouts of cell viability. Here, the authors develop a method for profiling post-perturbation transcriptional responses across large pools of cancer cell lines, enabling deep characterization of shared and context-specific responses.

    • James M. McFarland
    • Brenton R. Paolella
    • Aviad Tsherniak
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • Stream vertebrate and crayfish assemblages withstand megafires and total taxa, total fish and adult trout densities are positively associated with watershed burn severity within the first three years post-fire across 30 sites in western Oregon.

    • Allison G. Swartz
    • Ashley A. Coble
    • Meg A. Krawchuk
    ResearchOpen Access
    Communications Earth & Environment
    Volume: 6, P: 1-13
  • Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

    • Marta Paczkowska
    • Jonathan Barenboim
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • Genome-wide ancient DNA data from individuals from the Middle Bronze Age to Iron Age documents large-scale movement of people from the European continent between 1300 and 800 bc that was probably responsible for spreading early Celtic languages to Britain.

    • Nick Patterson
    • Michael Isakov
    • David Reich
    Research
    Nature
    Volume: 601, P: 588-594
  • Therapeutic modulation of Janus kinase family enzymes is an established approach for inflammatory and autoimmune skin diseases. Here the authors rationally design small interfering RNAs to enable single Janus kinase targeting and test this new therapeutic approach in a skin disease model for maintaining efficacy and improving selectivity.

    • Qi Tang
    • Hassan H. Fakih
    • John E. Harris
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Analyzing readouts of inflammaging across four cohorts, Franck and colleagues identify strong variation and observe that inflammaging, in its known form, primarily emerges in industrialized—but not nonindustrialized—populations.

    • Maximilien Franck
    • Kamaryn T. Tanner
    • Alan A. Cohen
    Research
    Nature Aging
    Volume: 5, P: 1471-1480
  • This Review discusses latest advances in the field of cutaneous lupus, including the improved understanding of disease pathogenesis and emerging targeted therapies.

    • Benjamin Klein
    • Allison C. Billi
    • J. Michelle Kahlenberg
    Reviews
    Nature Reviews Rheumatology
    Volume: 21, P: 703-718
  • An initial draft of the human pangenome is presented and made publicly available by the Human Pangenome Reference Consortium; the draft contains 94 de novo haplotype assemblies from 47 ancestrally diverse individuals.

    • Wen-Wei Liao
    • Mobin Asri
    • Benedict Paten
    ResearchOpen Access
    Nature
    Volume: 617, P: 312-324
  • The team of authors led by Seon-Kyeong Jang use whole-genome sequencing data and show that rare genetic variants explain much of the ‘missing heritability’ in smoking behaviours. These results help address a long-standing mystery in behavioural genetics.

    • Seon-Kyeong Jang
    • Luke Evans
    • Scott Vrieze
    Research
    Nature Human Behaviour
    Volume: 6, P: 1577-1586
  • Most studies of the genetics of the metabolome have been done in individuals of European descent. Here, the authors integrate genomics and metabolomics in Black individuals, highlighting the value of whole genome sequencing in diverse populations and linking circulating metabolites to human disease.

    • Usman A. Tahir
    • Daniel H. Katz
    • Robert E. Gerszten
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-16
  • Artificial self-assembling systems such as anion receptors or ‘binders’ are largely unexplored for therapeutic applications. Here, the authors report self-assembling trimetallic cryptands containing copper, zinc or manganese that encapsulate a range of anions, are highly toxic to human cancer cell lines and show metal-dependent selectivity towards cancer vs. healthy cells linked to the selective inhibition of multiple kinases.

    • Simon J. Allison
    • Jaroslaw Bryk
    • Craig R. Rice
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • Surface plasmon resonance is well established for biosensing applications, but commonly limited by complex optical detection. Here, the authors present a plasmonic sensor integrated in a photovoltaic cell, which generates an electronic signal sensitive to the solution refractive index via plasmon interaction

    • Giles Allison
    • Amrita Kumar Sana
    • Hironori Suzuki
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-7
  • Chromosomal instability occurs frequently in cancer, making it an attractive therapeutic target. Here, the authors identify KIF18A as a targetable vulnerability of cancer cells with chromosomal instability and target this using VLS-1272, a selective KIF18A inhibitor.

    • Aaron F. Phillips
    • Rumin Zhang
    • Christina H. Eng
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • An extinction-risk assessment of reptiles shows that at least 21.1% of species are threatened by factors such as agriculture, logging, urban development and invasive species, and that efforts to protect birds, mammals and amphibians probably also benefit many reptiles.

    • Neil Cox
    • Bruce E. Young
    • Yan Xie
    ResearchOpen Access
    Nature
    Volume: 605, P: 285-290
  • Dbr1 exhibits debranching specificity and effect on splicing. Here the authors combine co-immunoprecipitation, RNA binding and lariat analysis and suggest a role for Dbr1 interactor AQR in intron recycling. Dbr1 depletion leads to increased dwell time of spliceosome on excised lariats.

    • Luke Buerer
    • Nathaniel E. Clark
    • William G. Fairbrother
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • In Drosophila, long noncoding RNAs (lncRNAs) are expressed most highly in male germline cells. Here the authors report the subcellular distributions of approximately 600 Drosophila lncRNAs in male reproductive tissues, indicating potential involvement in spermatogenesis, fertility and evolution.

    • Zhantao Shao
    • Jack Hu
    • Henry M. Krause
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • Metabolic liver disease is highly prevalent in subjects with obesity and involves inflammation, insulin resistance, and fibrosis, leading to cirrhosis. Here, the authors show the IFNγ-IL12 axis in regulating intercellular crosstalk in the liver and playing a major role in the pathogenesis of metabolic liver disease.

    • Randall H. Friedline
    • Hye Lim Noh
    • Jason K. Kim
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-18
  • People spend much of their daily lives thinking about things that are unrelated to their immediate environment. Using fMRI, Kucyi et al. show that occurrence of these “stimulus-independent” thoughts can be predicted from a complex pattern of coordinated activity between distinct parts of the brain.

    • Aaron Kucyi
    • Michael Esterman
    • Susan Whitfield-Gabrieli
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-17
  • Germ-free mice were colonized with complex defined communities to show T cell recognition of commensals is focused on widely conserved, highly expressed cell-surface antigens, opening the door to new therapeutic strategies.

    • Kazuki Nagashima
    • Aishan Zhao
    • Michael A. Fischbach
    Research
    Nature
    Volume: 621, P: 162-170
  • Dysfunction in dorsal striatum, a brain region important for reward and habits, is linked to opioid use disorder (OUD). Here, authors delineate diverse cell populations in human dorsal striatum, revealing altered inflammatory and DNA damage signaling in OUD.

    • BaDoi N. Phan
    • Madelyn H. Ray
    • Ryan W. Logan
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-19
  • Fluoroquinolone (FQ)-induced DNA damage in persisters could promote antibiotic resistance. Here, using time-lapse microscopy and genetic analyses, the authors show that after a single round of FQ treatment, SOS response in persisters accelerates the development of resistance to unrelated antibiotics.

    • Theresa C. Barrett
    • Wendy W. K. Mok
    • Mark P. Brynildsen
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • The GLASS Consortium studies the evolutionary trajectories of 222 patients with a diffuse glioma to aid in our understanding of tumour progression and treatment failure

    • Floris P. Barthel
    • Kevin C. Johnson
    • Roel G. W. Verhaak
    Research
    Nature
    Volume: 576, P: 112-120
  • In the study, the authors identify a protein excreted by the parasite Trichuris muris, p43, which can modulate IL-13 function, a key cytokine involved in host protection. These data suggest that p43 may be a novel therapeutic target for both whipworm infections and IL13 mediated pathologies.

    • Allison J. Bancroft
    • Colin W. Levy
    • Richard K. Grencis
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • The influence of X chromosome genetic variation on blood lipids and coronary heart disease (CHD) is not well understood. Here, the authors analyse X chromosome sequencing data across 65,322 multi-ancestry individuals, identifying associations of the Xq23 locus with lipid changes and reduced risk of CHD and diabetes mellitus.

    • Pradeep Natarajan
    • Akhil Pampana
    • Gina M. Peloso
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-14
  • A study shows that clonal haematopoiesis of indeterminate potential is associated with an increased risk of chronic liver disease specifically through the promotion of liver inflammation and injury.

    • Waihay J. Wong
    • Connor Emdin
    • Pradeep Natarajan
    Research
    Nature
    Volume: 616, P: 747-754
  • The hippocampus in mammalian brain varies in size across individuals. Here, Hibar and colleagues perform a genome-wide association meta-analysis to find six genetic loci with significant association to hippocampus volume.

    • Derrek P. Hibar
    • Hieab H. H. Adams
    • M. Arfan Ikram
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-12
  • Targeted analysis of proteins on a broad scale with mass spectrometry is becoming a reality.

    • Allison Doerr
    Comments & Opinion
    Nature Methods
    Volume: 8, P: 43
  • Oncolytic viruses induce a variety of immune targets in the infected tumours. Here, the authors show that Newcastle Disease Virus (NDV) upregulates the inducible co-stimulator (ICOS) on T cells and that intratumoral targeting of ICOS with engineered NDV in combination with CTLA-4 blockade induces systemic anti-tumour immunity in mice.

    • Dmitriy Zamarin
    • Rikke B. Holmgaard
    • James P. Allison
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-14
  • Ecosystem services provided by coral reefs to coastal communities can depend on upstream land-use change activities such as forest restoration. This study assessed the social and ecological benefits provided by different watershed interventions designed at regional and national scales in Mesoamerica.

    • Jade M. S. Delevaux
    • Jess M. Silver
    • Katie K. Arkema
    Research
    Nature Sustainability
    Volume: 7, P: 545-557