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Showing 1–50 of 235 results
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  • The CMS experiment at CERN reports one of the highest-precision measurements of the W boson mass, finding it in line with standard model predictions and at odds with recent anomalous measurements.

    • V. Chekhovsky
    • A. Hayrapetyan
    • D. Druzhkin
    ResearchOpen Access
    Nature
    Volume: 652, P: 321-327
  • Clostridium perfringens lacking perfringolysin O toxin isolated from preterm infants metabolizes human milk oligosaccharide disialyllacto-N-tetraose to produce metabolites that promote the growth of commensal bifidobacteria, inhibit pathogens and suppress inflammation in an organoid model.

    • Jonathan A. Chapman
    • Andrea C. Masi
    • Christopher J. Stewart
    ResearchOpen Access
    Nature Microbiology
    Volume: 11, P: 940-959
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477
  • Riboswitches are allosteric RNA molecules that change conformation upon ligand binding to regulate downstream genes. Here, the authors use Restricted Boltzmann machines trained on natural sequences to design new riboswitch aptamer domains, and validate their functionality via chemical probing.

    • Jorge Fernandez-de-Cossio-Diaz
    • Pierre Hardouin
    • Simona Cocco
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • Genome-wide DNA polymerase usage maps determined in fission yeast, using a new sequencing strategy based on ribonucleotide misincorporation, track the division of labor between replicative polymerases and reveal locations and efficiencies of replication origins.

    • Yasukazu Daigaku
    • Andrea Keszthelyi
    • Antony M Carr
    Research
    Nature Structural & Molecular Biology
    Volume: 22, P: 192-198
  • While the benefits of crop diversity are known, doubts remain as to whether replacing cereals in rotations reduces nutrient production. A comparison of 16 long-term field experiments across Europe shows no trade-off between functionally rich rotations and food productivity.

    • Giulia Vico
    • Alessio Costa
    • Riccardo Bommarco
    ResearchOpen Access
    Nature Food
    Volume: 7, P: 185-193
  • Identifying jets originating from heavy quarks plays a fundamental role in hadronic collider experiments. In this work, the ATLAS Collaboration describes and tests a transformer-based neural network architecture for jet flavour tagging based on low-level input and physics-inspired constraints.

    • G. Aad
    • E. Aakvaag
    • L. Zwalinski
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-22
  • Raman and fluorescence spectra, consistent with several species of aromatic organic molecules, are reported in the Crater Floor sequences of Jezero crater, Mars, suggesting multiple mechanisms of organic synthesis, transport, or preservation.

    • Sunanda Sharma
    • Ryan D. Roppel
    • Anastasia Yanchilina
    ResearchOpen Access
    Nature
    Volume: 619, P: 724-732
  • Responsive molecular machines can perform specific tasks triggered by environmental or chemical stimuli. Here, the authors show that antibodies can be used as inputs to modulate the binding of a molecular cargo to a designed DNA-based nanomachine, with potential applications in diagnostics and drug delivery.

    • Simona Ranallo
    • Carl Prévost-Tremblay
    • Francesco Ricci
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-9
  • An analysis of 24,202 critical cases of COVID-19 identifies potentially druggable targets in inflammatory signalling (JAK1), monocyte–macrophage activation and endothelial permeability (PDE4A), immunometabolism (SLC2A5 and AK5), and host factors required for viral entry and replication (TMPRSS2 and RAB2A).

    • Erola Pairo-Castineira
    • Konrad Rawlik
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 617, P: 764-768
  • Dengue is a major public health concern in the Americas, and the Caribbean can be a source for reintroduction and spread. Here, the authors use travel surveillance data and genomic epidemiology to reconstruct Dengue epidemic dynamics in the Caribbean from 2009-2022.

    • Emma Taylor-Salmon
    • Verity Hill
    • Nathan D. Grubaugh
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • Graphene's remarkable properties make it ideal for optoelectronic devices, and its two-dimensional nature enables its integration with photonic structures. By combining a graphene transistor with a planar microcavity, Engelet al. control the spectrum of the photocurrent and the light emitted by the device.

    • Michael Engel
    • Mathias Steiner
    • Ralph Krupke
    ResearchOpen Access
    Nature Communications
    Volume: 3, P: 1-6
  • Whole-genome sequencing, transcriptome-wide association and fine-mapping analyses in over 7,000 individuals with critical COVID-19 are used to identify 16 independent variants that are associated with severe illness in COVID-19.

    • Athanasios Kousathanas
    • Erola Pairo-Castineira
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 607, P: 97-103
  • Cyanuric acid, a small molecule with three thymine-like faces, reprogrammes the assembly of unmodified poly(adenine) into long fibres with a unique internal structure. The association of adenine and cyanuric acid units into a hexameric rosette motif brings together poly(adenine) triplexes with subsequent cooperative polymerization.

    • Nicole Avakyan
    • Andrea A. Greschner
    • Hanadi F. Sleiman
    Research
    Nature Chemistry
    Volume: 8, P: 368-376
  • Genomic analyses applied to 14 childhood- and adult-onset psychiatric disorders identifies five underlying genomic factors that explain the majority of the genetic variance of the individual disorders.

    • Andrew D. Grotzinger
    • Josefin Werme
    • Jordan W. Smoller
    ResearchOpen Access
    Nature
    Volume: 649, P: 406-415
  • This study of magic-angle twisted trilayer graphene moiré superconductors using scanning tunnelling microscopy and spectroscopy identifies two energy gaps that develop from many-body resonance in this highly tunable class of materials.

    • Hyunjin Kim
    • Gautam Rai
    • Stevan Nadj-Perge
    Research
    Nature
    Volume: 650, P: 592-598
  • Theta oscillations have been implicated in hippocampal processing but mechanisms constraining phase timing of specific cell types are unknown. Here, the authors combine single-cell and multisite recordings with evolutionary computational models to evaluate mechanisms of phase preference of deep and superficial CA1 pyramidal cells.

    • Andrea Navas-Olive
    • Manuel Valero
    • Liset M. de la Prida
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Experimental realizations of discrete time crystals have mainly involved 1D models with Ising-like couplings. Here, the authors realize a 2D discrete time crystal with anisotropic Heisenberg coupling on a quantum simulator based on superconducting qubits, uncovering a rich phase diagram.

    • Eric D. Switzer
    • Niall F. Robertson
    • Nicolás Lorente
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-9
  • SAM riboswitches are RNA elements that regulate bacterial gene expression in response to binding of the small-molecule metabolite, S-adenosylmethionine. The SAM-II riboswitch binds its ligand through a conformational capture mechanism that is dependent on formation of a transient pseudoknot.

    • Andrea Haller
    • Ulrike Rieder
    • Ronald Micura
    Research
    Nature Chemical Biology
    Volume: 7, P: 393-400
  • The CMS Collaboration reports the measurement of the spin, parity, and charge conjugation properties of all-charm tetraquarks, exotic fleeting particles formed in proton–proton collisions at the Large Hadron Collider.

    • A. Hayrapetyan
    • V. Makarenko
    • A. Snigirev
    ResearchOpen Access
    Nature
    Volume: 648, P: 58-63
  • This study reconstructs the evolution of leaf venation networks, describing the transition from fewer, corrugated veins to high vein density and smoother loops. It also suggests herbivory as a potential driver of venation architectural changes.

    • Ilaine Silveira Matos
    • Bradley Vu
    • Benjamin W. Blonder
    Research
    Nature Plants
    Volume: 11, P: 1127-1141
  • The authors present a diploid reference-quality genome assembly of the widely used cell line RPE-1, revealing heightened variation between haplotypes and other human genomes at centromeres. The availability of a reference genome matching the cell line under study promises a new era of high-precision haplotype-resolved functional genomics.

    • Emilia Volpe
    • Alessio Colantoni
    • Simona Giunta
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Reviewing online resources and additional literature on national red lists, 361 extinct seed-plant taxa were identified. Of these, 556 herbarium specimens belonging to 161 extinct species were found to have a high ‘de-extinction candidate’ score.

    • Giulia Albani Rocchetti
    • Angelino Carta
    • Thomas Abeli
    Research
    Nature Plants
    Volume: 8, P: 1385-1393
  • Using a spatially explicit mechanistic model, the authors show that the distribution of all terrestrial bird species across the world is driven by an optimal balance between energy acquisition and energy expenditure.

    • Marius Somveille
    • Ana S. L. Rodrigues
    • Andrea Manica
    Research
    Nature Ecology & Evolution
    Volume: 2, P: 962-969
  • RNA provides a unique readout of a cell’s identity, physiologic status, and phenotype. Here the authors deliver an RNA sensing system that can use the information contained within cellular RNA to selectively control the activity of genetic programs.

    • Lauren Gambill
    • August Staubus
    • James Chappell
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-12
  • Analysis of more than 95% of each diploid human genome of a four-generation, twenty-eight-member family using five complementary short-read and long-read sequencing technologies provides a truth set to understand the most fundamental processes underlying human genetic variation.

    • David Porubsky
    • Harriet Dashnow
    • Evan E. Eichler
    ResearchOpen Access
    Nature
    Volume: 643, P: 427-436
  • A genome-wide association study of critically ill patients with COVID-19 identifies genetic signals that relate to important host antiviral defence mechanisms and mediators of inflammatory organ damage that may be targeted by repurposing drug treatments.

    • Erola Pairo-Castineira
    • Sara Clohisey
    • J. Kenneth Baillie
    Research
    Nature
    Volume: 591, P: 92-98
  • Here the authors uncover p53’s role as the master regulator of spatio-temporal genome organization. p53 controls the expression of 340 distal genes through newly formed and pre-existing loops between p53-bound enhancers and promoters.

    • François Serra
    • Andrea Nieto-Aliseda
    • Biola M. Javierre
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-19
  • The quark structure of the f0(980) hadron is still unknown after 50 years of its discovery. Here, the CMS Collaboration reports a measurement of the elliptic flow of the f0(980) state in proton-lead collisions at a nucleon-nucleon centre-of-mass energy of 8.16 TeV, providing strong evidence that the state is an ordinary meson.

    • A. Hayrapetyan
    • A. Tumasyan
    • A. Zhokin
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • Aminoglycoside antibiotics target the ribosome but their limited selectivity for the bacterial ribosome can cause side effects in humans. Here, the authors synthesize 4′-O-ether or 4′,6′-O-acetal modifications and show that these compounds possess increased selectivity against bacterial ribosomes.

    • Déborah Perez-Fernandez
    • Dmitri Shcherbakov
    • Erik C. Böttger
    ResearchOpen Access
    Nature Communications
    Volume: 5, P: 1-11
  • We present the complete 62,460,029-base-pair sequence of a human Y chromosome from the HG002 genome (T2T-Y) that corrects multiple errors in GRCh38-Y and adds over 30 million base pairs of sequence to the reference.

    • Arang Rhie
    • Sergey Nurk
    • Adam M. Phillippy
    Research
    Nature
    Volume: 621, P: 344-354
  • Complex networks can be used to model brain networks. Here the authors identify the essential nodes in a model of a brain network and then validate these predictions by means of in vivo pharmacogenetic interventions. They find that the nucleus accumbens is a central region for brain integration.

    • Gino Del Ferraro
    • Andrea Moreno
    • Hernán A. Makse
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-12
  • Mutational signatures provide evidence of the mechanism of action of a given mutagen and are found in cancer cells. Here, using 560 breast cancer genomes, the authors demonstrate that mutational signatures are frequently associated with genomic architecture including nucleosome positioning and replication timing.

    • Sandro Morganella
    • Ludmil B. Alexandrov
    • Serena Nik-Zainal
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-11
  • Designer Receptors Exclusively Activated by Designer Drugs (DREADDs) are a powerful tool for neuroscience, but the standard DREADD ligand, CNO, has significant drawbacks. Here the authors report two novel high-potency DREADD ligands and a novel DREADD radiotracer for imaging purposes.

    • Jordi Bonaventura
    • Mark A. G. Eldridge
    • Michael Michaelides
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-12
  • The physical size of the commonly used Cas9 from Streptococcus pyogenes poses challenges for CRISPR-Cas genome editing systems that use the adeno-associated virus as a delivery vehicle; here, smaller Cas9 orthologues are characterized, and Cas9 from Staphylococcus aureus allowed targeting of the cholesterol regulatory gene Pcsk9 in the mouse liver.

    • F. Ann Ran
    • Le Cong
    • Feng Zhang
    Research
    Nature
    Volume: 520, P: 186-191