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Showing 1–50 of 272 results
Advanced filters: Author: Bryan P Wu Clear advanced filters
  • In a randomized study involving 9 general cardiologists and 107 real-world patient cases, assistance from a specifically tailored large language model resulted in preferable responses on complex case management compared to physicians alone, as rated by specialist cardiologists using a multidimensional scoring rubric.

    • Jack W. O’Sullivan
    • Anil Palepu
    • Tao Tu
    ResearchOpen Access
    Nature Medicine
    P: 1-8
  • A comprehensive atlas platform integrating transcriptional and epigenetic data enables more precise engineering of T cell states, accelerating the rational design of more effective cellular immunotherapies.

    • H. Kay Chung
    • Cong Liu
    • Wei Wang
    ResearchOpen Access
    Nature
    P: 1-11
  • Genome-wide association studies (GWAS) have improved our understanding of the genetic basis of lung adenocarcinoma but known susceptibility variants explain only a small fraction of the familial risk. Here, the authors perform a two-stage GWAS and report 12 novel genetic loci associated with lung adenocarcinoma in East Asians.

    • Jianxin Shi
    • Kouya Shiraishi
    • Qing Lan
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-17
  • RNA G-quadruplexes (rG4s) are structures formed in guanine-rich regions of RNA that can serve as crucial regulatory elements in gene expression. Here the authors present an RNA language model for transcriptome-wide prediction of rG4s and genetic variants that disrupt or create them.

    • Farica Zhuang
    • Danielle Gutman
    • Yoseph Barash
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Telomere maintenance by telomerase depends on the correct assembly and the recruitment of the enzyme complex. Here, the authors reveal that the RNA/DNA binding proteins NONO, SFPQ, and PSPC1 interact with telomerase via the hTR RNA template, facilitating telomerase trafficking out of Cajal bodies and recruitment to the telomere.

    • Alexander P. Sobinoff
    • Jadon K. Wells
    • Hilda A. Pickett
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Federated learning (FL) algorithms have emerged as a promising solution to train models for healthcare imaging across institutions while preserving privacy. Here, the authors describe the Federated Tumor Segmentation (FeTS) challenge for the decentralised benchmarking of FL algorithms and evaluation of Healthcare AI algorithm generalizability in real-world cancer imaging datasets.

    • Maximilian Zenk
    • Ujjwal Baid
    • Spyridon Bakas
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • The authors find that TDP-43 loss of function—the pathology defining the neurodegenerative conditions ALS and FTD—induces novel mRNA polyadenylation events, which have different effects, including an increase in RNA stability, leading to higher protein levels.

    • Sam Bryce-Smith
    • Anna-Leigh Brown
    • Pietro Fratta
    ResearchOpen Access
    Nature Neuroscience
    Volume: 28, P: 2190-2200
  • A light-induced spin voltage is demonstrated that arises from a spin-dependent excitation and diffusion of photo-excited electrons near heavy-metal/magnetic-insulator interfaces.

    • David Ellsworth
    • Lei Lu
    • Mingzhong Wu
    Research
    Nature Physics
    Volume: 12, P: 861-866
  • Central serous chorioretinopathy is an eye disease whose etiology is not well known. Here, the authors performed genetic association studies and identified vascular endothelial protein tyrosine phosphatase (VE-PTP) as a likely regulator of the risk of central serous chorioretinopathy, as well as other eye and vascular diseases.

    • Joel T. Rämö
    • Bryan R. Gorman
    • Elizabeth J. Rossin
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • A phase I trial of a neoantigen-targeting personalized cancer vaccine led to durable and polyfunctional T cell responses and antitumour recognition, and was associated with no recurrence in patients with high-risk clear cell renal cell carcinoma.

    • David A. Braun
    • Giorgia Moranzoni
    • Toni K. Choueiri
    ResearchOpen Access
    Nature
    Volume: 639, P: 474-482
  • A genome-wide association study including over 76,000 individuals with schizophrenia and over 243,000 control individuals identifies common variant associations at 287 genomic loci, and further fine-mapping analyses highlight the importance of genes involved in synaptic processes.

    • Vassily Trubetskoy
    • Antonio F. Pardiñas
    • Jim van Os
    Research
    Nature
    Volume: 604, P: 502-508
  • An analysis of 24,202 critical cases of COVID-19 identifies potentially druggable targets in inflammatory signalling (JAK1), monocyte–macrophage activation and endothelial permeability (PDE4A), immunometabolism (SLC2A5 and AK5), and host factors required for viral entry and replication (TMPRSS2 and RAB2A).

    • Erola Pairo-Castineira
    • Konrad Rawlik
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 617, P: 764-768
  • A survey of the CD4+ T cells in human melanomas indicates that immune evasion is mediated through direct stimulation of neoantigen-specific tumour-reactive regulatory T cells by HLA class II-positive melanoma cells.

    • Giacomo Oliveira
    • Kari Stromhaug
    • Catherine J. Wu
    Research
    Nature
    Volume: 605, P: 532-538
  • Here, the authors use computational screening and a chemogenetic analysis of transgenic mice to show that Gαs-coupled G-protein-coupled receptors on exhausted CD8+ T cells are involved in suppression of effector functions and inhibition of the protective effects of immune checkpoint immunotherapy.

    • Victoria H. Wu
    • Bryan S. Yung
    • J. Silvio Gutkind
    Research
    Nature Immunology
    Volume: 24, P: 1318-1330
  • Hydroxyl-carboxylic acid receptor 2 (HCA2) functions as a high-affinity receptor for nicotinic acid (vitamin B3). Here, authors report the cryo-EM structure of the HCA2-Gi complex with the agonist MK-6892 and inactive state crystal structures of mutation stabilized HCA2, to describe the mechanism of HCA2 signaling.

    • Yang Yang
    • Hye Jin Kang
    • Zhi-Jie Liu
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-11
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477
  • Circulating cell-free DNA (cfDNA) assays for monitoring individuals with cancer typically use tumor-specific mutations that may not be detected in many patients. Here, the authors develop a tumor-independent and mutation-independent approach (DELFI-TF) to estimate tumor burden in cfDNA for treatment response monitoring and clinical outcome prediction.

    • Iris van ’t Erve
    • Bahar Alipanahi
    • Alessandro Leal
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • This overview of the ENCODE project outlines the data accumulated so far, revealing that 80% of the human genome now has at least one biochemical function assigned to it; the newly identified functional elements should aid the interpretation of results of genome-wide association studies, as many correspond to sites of association with human disease.

    • Ian Dunham
    • Anshul Kundaje
    • Ewan Birney
    ResearchOpen Access
    Nature
    Volume: 489, P: 57-74
  • Configuration control of non-conservative multi-body systems is challenging. Here, the authors develop a general method using parametric pumping to selectively excite and destroy undesired structures to populate a targeted one, and demonstrate it with acoustically levitated particle systems.

    • Qinghao Mao
    • Brady Wu
    • Heinrich M. Jaeger
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • A high-resolution, global atlas of mortality of children under five years of age between 2000 and 2017 highlights subnational geographical inequalities in the distribution, rates and absolute counts of child deaths by age.

    • Roy Burstein
    • Nathaniel J. Henry
    • Simon I. Hay
    ResearchOpen Access
    Nature
    Volume: 574, P: 353-358
  • High-quality diploid assemblies of potato genomes from 24 wild and 20 cultivated potatoes provide insights into the complex evolution and diversity of potatoes, and could have applications in the breeding of hybrid potatoes.

    • Dié Tang
    • Yuxin Jia
    • Sanwen Huang
    ResearchOpen Access
    Nature
    Volume: 606, P: 535-541
  • Samples of different body regions from hundreds of human donors are used to study how genetic variation influences gene expression levels in 44 disease-relevant tissues.

    • François Aguet
    • Andrew A. Brown
    • Jingchun Zhu
    ResearchOpen Access
    Nature
    Volume: 550, P: 204-213
  • Screening in Escherichia coli and biochemical experiments show that in Arabidopsis thaliana, OSCA2.1 and OSCA2.2 function as plant sensors of hypo-osmolarity, utilize Ca2+ oscillations as second messengers and have crucial roles in pollen germination.

    • Songyu Pei
    • Qi Tao
    • Fang Yuan
    ResearchOpen Access
    Nature
    Volume: 629, P: 1118-1125
  • Purifying C2H2 by removing trace CO2 is needed but challenging due to their analogous physical properties. Herein, the authors report the pilot-scale production of a commercial resin adsorbent loaded with polyethyleneimine for the selective capture of CO2 traces and exclusion of C2H2.

    • Jin-Sheng Zou
    • Zhi-Peng Wang
    • Yun-Lei Peng
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • John Chambers, Jaspal Kooner, Pim van der Harst, Shyong Tai, Paul Elliott, Jiang He, Norihiro Kato and colleagues performed a genome-wide association study of blood pressure phenotypes in individuals of European, East Asian and South Asian ancestry. They find trait-associated SNPs at 12 loci, some of which are associated with methylation at nearby CpG sites.

    • Norihiro Kato
    • Marie Loh
    • John C Chambers
    Research
    Nature Genetics
    Volume: 47, P: 1282-1293
  • Population-based surveys are the gold standard for estimating seroprevalence but are expensive and often only capture a small geographic area or window of time. This study describes a new platform, SCALE-IT, for serosurveillance based on algorithmic sampling of electronic health records, and uses it to estimate the seroprevalence of SARS-CoV-2 in San Francisco.

    • Isobel Routledge
    • Adrienne Epstein
    • Isabel Rodriguez-Barraquer
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-9
  • The paper reveals areas of common and differentiated SDG priority at the national and subnational levels in China considering synergy and trade-off. The findings suggest that provincial governments should formulate more targeted policy aligning with national priority to achieve SDGs.

    • Qiang Xing
    • Chaoyang Wu
    • Zhenci Xu
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • Highly pathogenic avian influenza virus subtype H5 is an important pathogen of wild birds and poultry that has also caused infection in humans and other mammals. Here the authors use wild bird movement tracking data and virus genome sequences to quantify how seasonal bird migration facilitates global dispersal of the virus.

    • Qiqi Yang
    • Ben Wang
    • Bryan Grenfell
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • This study finds that sST2 is a disease-causing factor for Alzheimer’s disease. Higher sST2 levels impair microglial Aβ clearance in APOE4+ female individuals. A genetic variant, rs1921622, is associated with a reduction in sST2 level and protects against AD in APOE4+ female individuals.

    • Yuanbing Jiang
    • Xiaopu Zhou
    • Nancy Y. Ip
    ResearchOpen Access
    Nature Aging
    Volume: 2, P: 616-634
  • Whole-genome sequencing, transcriptome-wide association and fine-mapping analyses in over 7,000 individuals with critical COVID-19 are used to identify 16 independent variants that are associated with severe illness in COVID-19.

    • Athanasios Kousathanas
    • Erola Pairo-Castineira
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 607, P: 97-103
  • Experimental warming of the active layer in permafrost tundra increased ecosystem respiration ~30%. Shoulder-season warming caused rapid snow melt and 100-fold higher methane emissions. Warming promotes greenhouse gas emissions, potentially contributing to arctic amplification of climate change

    • Margaret S. Torn
    • Rose Z. Abramoff
    • Biao Zhu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • This study reports on biologically sourced polymuconate polymers with weakened C–C backbone bonds, designed for closed-loop chemical recycling to monomers. Synthesized via free-radical polymerization, these materials achieve tunable mechanical properties comparable to those of commercial plastics. A techno-economic analysis shows that recycling significantly reduces costs and environmental impacts, enhancing the competitiveness of these polymers in the sustainable plastics market.

    • Qixuan Hu
    • Xuyi Luo
    • Letian Dou
    Research
    Nature Chemical Engineering
    Volume: 2, P: 130-141
  • The authors develop a new oxide-dispersion-strengthened NiCoCr-based alloy using a model-driven alloy design approach and laser-based additive manufacturing, showing how such designs can provide superior compositions using far fewer resources than previous methods.

    • Timothy M. Smith
    • Christopher A. Kantzos
    • John W. Lawson
    ResearchOpen Access
    Nature
    Volume: 617, P: 513-518
  • Roland et al. report the results of a randomized, non-comparative phase 2 trial of neoadjuvant nivolumab or a combination of nivolumab and ipilimumab in patients with resectable retroperitoneal dedifferentiated liposarcoma and extremity/truncal undifferentiated pleomorphic sarcoma.

    • Christina L. Roland
    • Elise F. Nassif Haddad
    • Neeta Somaiah
    Research
    Nature Cancer
    Volume: 5, P: 625-641
  • Disruption of mucin-domain glycoprotein expression and function in the endothelial glycocalyx are associated with ageing and Alzheimer’s disease, leading to dysregulated blood–brain barrier function.

    • Sophia M. Shi
    • Ryan J. Suh
    • Tony Wyss-Coray
    ResearchOpen Access
    Nature
    Volume: 639, P: 985-994