Nature Search

Correction: Corrigendum: Gated three-terminal device architecture to eliminate persistent photoconductivity in oxide semiconductor photosensor arrays

Sanghun Jeon
Seung-Eon Ahn
Kinam Kim
Amendments and Corrections24 Mar 2015
Nature Materials

Volume: 14, P: 452
Author Correction: A virtual memory CD8+ T cell-originated subset causes alopecia areata through innate-like cytotoxicity

Joon Seok
Sung-Dong Cho
Su-Hyung Park
Amendments and Corrections05 Nov 2025
Nature Immunology

Volume: 27, P: 166
Author Correction: Intestinal non-canonical NFκB signaling shapes the local and systemic immune response

Sadeesh K. Ramakrishnan
Huabing Zhang
Yatrik M. Shah
Amendments and CorrectionsOpen Access08 Jul 2025
Nature Communications

Volume: 16, P: 1
NR3C1-mediated epigenetic regulation suppresses astrocytic immune responses in mice

How genetic predisposition drives late-onset disease risk remains unclear. Here, the authors show that epigenetic predisposition via NR3C1-dependent early postnatal 3D gene regulation primes astrocytes for lifelong immune vulnerability.

Seongwan Park
Hyeonji Park
Inkyung Jung
ResearchOpen Access22 Sept 2025
Nature Communications

Volume: 16, P: 1-16
Correction: Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation

Matthew D. Schultz
Yupeng He
Joseph R. Ecker
Amendments and Corrections25 Nov 2015
Nature

Volume: 530, P: 242
Single-cell transcriptome analyses reveal distinct gene expression signatures of severe COVID-19 in the presence of clonal hematopoiesis

Baekgyu Choi
Chang Kyung Kang
Inkyung Jung
ResearchOpen Access13 Oct 2022
Experimental & Molecular Medicine

Volume: 54, P: 1756-1765
Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition

Three papers in this issue of Nature use highly sensitive ChIP–seq assays to describe the dynamic patterns of histone modifications during early mouse embryogenesis, showing that oocytes have a distinctive epigenome and providing insights into how the maternal gene expression program transitions to the zygotic program.

John Arne Dahl
Inkyung Jung
Arne Klungland
Research14 Sept 2016
Nature

Volume: 537, P: 548-552
Prion-like domain mediated phase separation of ARID1A promotes oncogenic potential of Ewing’s sarcoma

ARID1A is a chromatin remodeling protein frequently mutated in cancer. Here the authors report that ARID1A plays a role in forming membraneless organelles through liquid-liquid phase separation (LLPS). ARID1A condensates were elevated in Ewing’s sarcoma patients.

Yong Ryoul Kim
Jaegeon Joo
Sung Hee Baek
ResearchOpen Access03 Aug 2024
Nature Communications

Volume: 15, P: 1-18
Type 1 interferon signature and allograft inflammatory factor-1 contribute to refractoriness to TNF inhibition in ankylosing spondylitis

TNF inhibitor (TNFi) has been used to manage active inflammation in ankylosing spondylitis (AS), but not all patients respond. Here, through longitudinal and multi-omics profiling, the authors show that elevated type-I IFN signature and allograft inflammatory factor-1 expression at baseline inversely correlate with TNFi responsiveness in AS patients.

Woogil Song
Eunyoung Emily Lee
Eun Young Lee
ResearchOpen Access01 Jul 2025
Nature Communications

Volume: 16, P: 1-18
PD-L1 expression on immune cells, but not on tumor cells, is a favorable prognostic factor for head and neck cancer patients

Hye Ryun Kim
Sang-Jun Ha
Sun Och Yoon
ResearchOpen Access14 Nov 2016
Scientific Reports

Volume: 6, P: 1-12
Rising public costs of preterm infant hospitalization in South Korea from a nationwide observational study

Ji Young Lee
Joonsik Park
Jong Gyun Ahn
ResearchOpen Access24 Apr 2025
Scientific Reports

Volume: 15, P: 1-7
Chromatin architecture reorganization during stem cell differentiation

An analysis of genome-wide chromatin interactions during human embryonic stem cell differentiation reveals changes in chromatic organization and simultaneously identifies allele-resolved chromatin structure and differences in gene expression during differentiation.

Jesse R. Dixon
Inkyung Jung
Bing Ren
ResearchOpen Access18 Feb 2015
Nature

Volume: 518, P: 331-336
Gated three-terminal device architecture to eliminate persistent photoconductivity in oxide semiconductor photosensor arrays

The slow decay of photoconductivity in amorphous oxide semiconductors hampers their use in photosensor arrays with viable frame rates. A gated sensor architecture now provides direct control over the Fermi-level position in the semiconductor layer, and eliminates persistent photoconductivity by accelerating electron recombination with ionized oxygen vacancy sites.

Sanghun Jeon
Seung-Eon Ahn
Kinam Kim
Research26 Feb 2012
Nature Materials

Volume: 11, P: 301-305
Durvalumab plus pazopanib combination in patients with advanced soft tissue sarcomas: a phase II trial

Response rates to immune-checkpoint inhibitors in patients with advanced sarcoma remain modest. Here the authors report the results of a phase 2 study of durvalumab (anti-PD-L1) in combination with the anti-VEGF receptor tyrosine-kinase inhibitor pazopanib in unselected advanced sarcomas with correlative genomic analysis.

Hee Jin Cho
Kum-Hee Yun
Hyo Song Kim
ResearchOpen Access23 Jan 2024
Nature Communications

Volume: 15, P: 1-10
Impact of thyroid hormone replacement on the risk of second cancer after thyroidectomy: a Korean National Cohort Study

Joon Ho
Minkyung Han
Jandee Lee
ResearchOpen Access28 Sept 2023
Scientific Reports

Volume: 13, P: 1-7
A virtual memory CD8⁺ T cell-originated subset causes alopecia areata through innate-like cytotoxicity

Virtual memory T cells have antimicrobial functions but whether they can contribute to inflammatory pathology is unclear. Here the authors show that a subset of CD8⁺ T cells that originates from virtual memory T cells upon cytokine stimulation can drive the chronic inflammatory disease alopecia areata via innate-like cytotoxic effector functions.

Joon Seok
Sung-Dong Cho
Su-Hyung Park
Research26 Jun 2023
Nature Immunology

Volume: 24, P: 1308-1317
A compendium of chromatin contact maps reflecting regulation by chromatin remodelers in budding yeast

The effect of ATP-dependent chromatin remodelers on 3D genome organization has not been well studied. Here the authors employ in situ Hi-C with an auxin-inducible degron system to degrade chromatin remodelers in yeast to find that the 3D structure of chromatin collapses in their absence. The chromatin remodeling can modulate 3D architecture depending on chromosomal context and cell cycle stage.

Hyelim Jo
Taemook Kim
Daeyoup Lee
ResearchOpen Access04 Nov 2021
Nature Communications

Volume: 12, P: 1-11
Development of a Korean Liver Allocation System using Model for End Stage Liver Disease Scores: A Nationwide, Multicenter study

Juhan Lee
Jae Geun Lee
Shin Hwang
ResearchOpen Access16 May 2019
Scientific Reports

Volume: 9, P: 1-10
Peripheral natural killer cells and myeloid-derived suppressor cells correlate with anti-PD-1 responses in non-small cell lung cancer

Je-In Youn
Su-Myeong Park
Hye Ryun Kim
ResearchOpen Access03 Jun 2020
Scientific Reports

Volume: 10, P: 1-7
Intestinal non-canonical NFκB signaling shapes the local and systemic immune response

Microfold cells (M-cell) are specialized cells of the intestine that sample luminal microbiota and dietary antigens. Here the authors show that epithelial non-canonical NFκB signalling, as induced by NIK, is important for M-cells maintenance, yet constitutive NIK activation is associated with gut inflammation and inflammatory bowel disease.

Sadeesh K. Ramakrishnan
Huabing Zhang
Yatrik M. Shah
ResearchOpen Access08 Feb 2019
Nature Communications

Volume: 10, P: 1-16
Genomic hypomethylation in cell-free DNA predicts responses to checkpoint blockade in lung and breast cancer

Kyeonghui Kim
Hyemin Kim
Jung Kyoon Choi
ResearchOpen Access18 Dec 2023
Scientific Reports

Volume: 13, P: 1-15
Impact of the COVID-19 pandemic on incidence of psychiatric disorders using nationwide cohort data and ARIMA models

Jun Ho Seo
Myeongjee Lee
Jee In Kang
ResearchOpen Access28 Jul 2025
Scientific Reports

Volume: 15, P: 1-14
MHC II immunogenicity shapes the neoepitope landscape in human tumors

DeepNeo identifies major histocompatibility complex (MHC) I or MHC II neoepitopes that are immunogenically compatible with the T cell repertoire. It can predict neoepitopes most likely to be depleted through spontaneous immunity or through immune checkpoint blockade from untreated and immunotherapy-treated tumor datasets.

Jeong Yeon Kim
Hongui Cha
Jung Kyoon Choi
Research09 Jan 2023
Nature Genetics

Volume: 55, P: 221-231
A compendium of promoter-centered long-range chromatin interactions in the human genome

Mapping long-range chromatin interactions in 27 human cell/tissue types identifies candidate target genes of 70,329 putative regulatory elements. Further analysis suggests potential regulatory function for 27,325 noncoding variants associated with 2,117 traits and diseases.

Inkyung Jung
Anthony Schmitt
Bing Ren
Research09 Sept 2019
Nature Genetics

Volume: 51, P: 1442-1449
Integrative analysis of haplotype-resolved epigenomes across human tissues

As part of the Epigenome Roadmap project, this study uses a chromosome-spanning haplotype reconstruction strategy to construct haplotype-resolved epigenomic maps for a diverse set of human tissues; the maps reveal extensive allelic biases in chromatin state and transcription, which vary across individuals due to genetic backgrounds.

Danny Leung
Inkyung Jung
Bing Ren
ResearchOpen Access18 Feb 2015
Nature

Volume: 518, P: 350-354
Harmful effect of repetitive intravenous iodinated contrast media administration on the long-term renal function of patients with early gastric cancer

Ja Ho Koo
Myeongjee Lee
Yong Eun Chung
ResearchOpen Access09 Nov 2023
Scientific Reports

Volume: 13, P: 1-9
A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells

CREST-seq allows functional screening of cis-regulatory elements through the use of sgRNA pairs to introduce tiled deletions in regions of interest. The analysis of a 2-megabase target region shows that promoters can act as distal enhancers for unrelated genes.

Yarui Diao
Rongxin Fang
Bing Ren
Research17 Apr 2017
Nature Methods

Volume: 14, P: 629-635
Author Correction: Early dental visit affects dental treatment in Korean preschool children born preterm: a nationwide population-based study

Jin Ah Park
Hye Lim Jun
Chung-Min Kang
Amendments and CorrectionsOpen Access09 Dec 2024
Scientific Reports

Volume: 14, P: 1
Human body epigenome maps reveal noncanonical DNA methylation variation

As part of the Epigenome Roadmap Project, genome-wide maps of DNA methylation and transcriptomes together with genomic DNA sequencing of 18 different primary human tissue types from 4 individuals are presented; analysis reveals widespread differential methylation of CG sites between tissues, and the presence of non-CG methylation in adult tissues.

Matthew D. Schultz
Yupeng He
Joseph R. Ecker
ResearchOpen Access01 Jun 2015
Nature

Volume: 523, P: 212-216
The human noncoding genome defined by genetic diversity

This study presents a map of sequence constraint in humans based on 11,257 whole-genome sequences and 16,384 heptamers. The map identifies regulatory elements among the most constrained regions of the genome and will aid interpretation of noncoding variants.

Julia di Iulio
Istvan Bartha
Amalio Telenti
Research26 Feb 2018
Nature Genetics

Volume: 50, P: 333-337
Early dental visit affects dental treatment in Korean preschool children born preterm: a nationwide population-based study

Jin Ah Park
Hye Lim Jun
Chung-Min Kang
ResearchOpen Access09 Oct 2024
Scientific Reports

Volume: 14, P: 1-12
Stability selection for LASSO with weights based on AUC

Yonghan Kwon
Kyunghwa Han
Inkyung Jung
ResearchOpen Access30 Mar 2023
Scientific Reports

Volume: 13, P: 1-11
A tree-based scan statistic for zero-inflated count data in post-market drug safety surveillance

Goeun Park
Inkyung Jung
ResearchOpen Access29 Sept 2022
Scientific Reports

Volume: 12, P: 1-12
Impact of thyroid cancer on the cancer risk in patients with non-alcoholic fatty liver disease or dyslipidemia

Joon Ho
Eunhwa Kim
Jandee Lee
ResearchOpen Access19 Jan 2023
Scientific Reports

Volume: 13, P: 1-9
BAP1 shapes the bone marrow niche for lymphopoiesis by fine-tuning epigenetic profiles in endosteal mesenchymal stromal cells

Jinguk Jeong
Inkyung Jung
Rho Hyun Seong
Research26 Apr 2022
Cell Death & Differentiation

Volume: 29, P: 2151-2162
Use of serotonin reuptake inhibitors and risk of subsequent bone loss in a nationwide population-based cohort study

Sunyoung Kang
Minkyung Han
Se Joo Kim
ResearchOpen Access29 Jun 2021
Scientific Reports

Volume: 11, P: 1-9

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Correction: Corrigendum: Gated three-terminal device architecture to eliminate persistent photoconductivity in oxide semiconductor photosensor arrays

Author Correction: A virtual memory CD8+ T cell-originated subset causes alopecia areata through innate-like cytotoxicity

Author Correction: Intestinal non-canonical NFκB signaling shapes the local and systemic immune response

NR3C1-mediated epigenetic regulation suppresses astrocytic immune responses in mice

Correction: Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation

Single-cell transcriptome analyses reveal distinct gene expression signatures of severe COVID-19 in the presence of clonal hematopoiesis

Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition

Prion-like domain mediated phase separation of ARID1A promotes oncogenic potential of Ewing’s sarcoma

Type 1 interferon signature and allograft inflammatory factor-1 contribute to refractoriness to TNF inhibition in ankylosing spondylitis

PD-L1 expression on immune cells, but not on tumor cells, is a favorable prognostic factor for head and neck cancer patients

Rising public costs of preterm infant hospitalization in South Korea from a nationwide observational study

Chromatin architecture reorganization during stem cell differentiation

Gated three-terminal device architecture to eliminate persistent photoconductivity in oxide semiconductor photosensor arrays

Durvalumab plus pazopanib combination in patients with advanced soft tissue sarcomas: a phase II trial

Impact of thyroid hormone replacement on the risk of second cancer after thyroidectomy: a Korean National Cohort Study

A virtual memory CD8⁺ T cell-originated subset causes alopecia areata through innate-like cytotoxicity

A compendium of chromatin contact maps reflecting regulation by chromatin remodelers in budding yeast

Development of a Korean Liver Allocation System using Model for End Stage Liver Disease Scores: A Nationwide, Multicenter study

Peripheral natural killer cells and myeloid-derived suppressor cells correlate with anti-PD-1 responses in non-small cell lung cancer

Intestinal non-canonical NFκB signaling shapes the local and systemic immune response

Genomic hypomethylation in cell-free DNA predicts responses to checkpoint blockade in lung and breast cancer

Impact of the COVID-19 pandemic on incidence of psychiatric disorders using nationwide cohort data and ARIMA models

MHC II immunogenicity shapes the neoepitope landscape in human tumors

A compendium of promoter-centered long-range chromatin interactions in the human genome

Integrative analysis of haplotype-resolved epigenomes across human tissues

Harmful effect of repetitive intravenous iodinated contrast media administration on the long-term renal function of patients with early gastric cancer

A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells

Author Correction: Early dental visit affects dental treatment in Korean preschool children born preterm: a nationwide population-based study

Human body epigenome maps reveal noncanonical DNA methylation variation

The human noncoding genome defined by genetic diversity

Early dental visit affects dental treatment in Korean preschool children born preterm: a nationwide population-based study

Stability selection for LASSO with weights based on AUC

A tree-based scan statistic for zero-inflated count data in post-market drug safety surveillance

Impact of thyroid cancer on the cancer risk in patients with non-alcoholic fatty liver disease or dyslipidemia

BAP1 shapes the bone marrow niche for lymphopoiesis by fine-tuning epigenetic profiles in endosteal mesenchymal stromal cells

Use of serotonin reuptake inhibitors and risk of subsequent bone loss in a nationwide population-based cohort study

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