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Showing 1–50 of 79 results
Advanced filters: Author: Jonathan Barnard Clear advanced filters
  • This work highlights how changes to beaches are related to sand movement and human impacts to the coast and illuminates opportunities for sand management to resolve shoreline erosion and enhance beach sustainability.

    • Jonathan A. Warrick
    • Kilian Vos
    • Brett F. Sanders
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-15
  • Optical assembly of nanoparticle structures could open new avenues for manufacturing nanomaterials and devices. Herrmann et al.show the plasmon-induced laser threading of gold nanoparticle strings, enabling them to fabricate precisely assembled 12-nm wide conducting chains.

    • Lars O. Herrmann
    • Ventsislav K. Valev
    • Jeremy J. Baumberg
    ResearchOpen Access
    Nature Communications
    Volume: 5, P: 1-6
  • New reference genomes of the two extant monotreme lineages (platypus and echidna) reveal the ancestral and lineage-specific genomic changes that shape both monotreme and mammalian evolution.

    • Yang Zhou
    • Linda Shearwin-Whyatt
    • Guojie Zhang
    ResearchOpen Access
    Nature
    Volume: 592, P: 756-762
  • The authors use a computational approach (NETBAG+) to integrate and analyze diverse genetic data and apply this to study schizophrenia-associated genetic variations. They identify gene networks related to axon guidance, synaptic function, cell mobility and chromosomal remodeling.

    • Sarah R Gilman
    • Jonathan Chang
    • Dennis Vitkup
    Research
    Nature Neuroscience
    Volume: 15, P: 1723-1728
  • Here the authors provide an explanation for 95% of examined predicted loss of function variants found in disease-associated haploinsufficient genes in the Genome Aggregation Database (gnomAD), underscoring the power of the presented analysis to minimize false assignments of disease risk.

    • Sanna Gudmundsson
    • Moriel Singer-Berk
    • Anne O’Donnell-Luria
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • ENSO end members El Niño and La Niña are linked to elevated coastal hazards across the Pacific region. Here, the authors show that the wave conditions and coastal response for the 2015–16 El Niño indicate that it was one of the most significant events of the last 145 years.

    • Patrick L. Barnard
    • Daniel Hoover
    • Katherine A. Serafin
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-8
    • ANTHONY J. PINCHING
    • DONALD J. JEFFRIES
    • JONATHAN N. WEBER
    Correspondence
    Nature
    Volume: 347, P: 324
  • The goals, resources and design of the NHLBI Trans-Omics for Precision Medicine (TOPMed) programme are described, and analyses of rare variants detected in the first 53,831 samples provide insights into mutational processes and recent human evolutionary history.

    • Daniel Taliun
    • Daniel N. Harris
    • Gonçalo R. Abecasis
    ResearchOpen Access
    Nature
    Volume: 590, P: 290-299
  • A low-mass star that is just 12 parsecs away from Earth is shown to be transited by an Earth-sized planet, GJ 1132b, which probably has a rock/iron composition and might support a substantial atmosphere.

    • Zachory K. Berta-Thompson
    • Jonathan Irwin
    • Anaël Wünsche
    Research
    Nature
    Volume: 527, P: 204-207
  • An Earth-sized planet is observed orbiting a nearby star within the liquid-water, habitable zone, the atmospheric composition of which could be determined from future observations.

    • Jason A. Dittmann
    • Jonathan M. Irwin
    • Courtney D. Dressing
    Research
    Nature
    Volume: 544, P: 333-336
  • Exome sequences from the first 49,960 participants in the UK Biobank highlight the promise of genome sequencing in large population-based studies and are now accessible to the scientific community.

    • Cristopher V. Van Hout
    • Ioanna Tachmazidou
    • Aris Baras
    ResearchOpen Access
    Nature
    Volume: 586, P: 749-756
  • Using data from a single time point, passenger-approximated clonal expansion rate (PACER) estimates the fitness of common driver mutations that lead to clonal haematopoiesis and identifies TCL1A activation as a mediator of clonal expansion.

    • Joshua S. Weinstock
    • Jayakrishnan Gopakumar
    • Siddhartha Jaiswal
    Research
    Nature
    Volume: 616, P: 755-763
  • Heart failure is a complex syndrome that is associated with many different underlying risk factors. Here, to increase power, the authors jointly analyse cases of heart failure of different aetiologies in a genome-wide association study and identify 11 loci of which ten had not been previously reported.

    • Sonia Shah
    • Albert Henry
    • R. Thomas Lumbers
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • In a cohort of 281 children with diagnosed or suspected cancer presenting to the NHS, implementing routine whole-genome sequencing provided clinical benefit in 29% of cases and led to change in management in 7% of patients.

    • Angus Hodder
    • Sarah M. Leiter
    • Sam Behjati
    ResearchOpen Access
    Nature Medicine
    Volume: 30, P: 1905-1912
  • A study shows that clonal haematopoiesis of indeterminate potential is associated with an increased risk of chronic liver disease specifically through the promotion of liver inflammation and injury.

    • Waihay J. Wong
    • Connor Emdin
    • Pradeep Natarajan
    Research
    Nature
    Volume: 616, P: 747-754
  • Most studies of the genetics of the metabolome have been done in individuals of European descent. Here, the authors integrate genomics and metabolomics in Black individuals, highlighting the value of whole genome sequencing in diverse populations and linking circulating metabolites to human disease.

    • Usman A. Tahir
    • Daniel H. Katz
    • Robert E. Gerszten
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-16
  • Although the common genetic variants contributing to blood lipid levels have been studied, the contribution of rare variants is less understood. Here, the authors perform a rare coding and noncoding variant association study of blood lipid levels using whole genome sequencing data.

    • Margaret Sunitha Selvaraj
    • Xihao Li
    • Pradeep Natarajan
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-18
  • Pump–probe measurements conventionally achieve femtosecond time resolution for X-ray crystallography of reactive processes, but the measured structural dynamics are complex. Using coherent control techniques, we show that the ultrafast crystallographic differences of a fluorescent protein are dominated by ground-state vibrational processes that are unconnected to the photoisomerization reaction of the chromophore.

    • Christopher D. M. Hutchison
    • James M. Baxter
    • Jasper J. van Thor
    ResearchOpen Access
    Nature Chemistry
    Volume: 15, P: 1607-1615
  • Dbr1 exhibits debranching specificity and effect on splicing. Here the authors combine co-immunoprecipitation, RNA binding and lariat analysis and suggest a role for Dbr1 interactor AQR in intron recycling. Dbr1 depletion leads to increased dwell time of spliceosome on excised lariats.

    • Luke Buerer
    • Nathaniel E. Clark
    • William G. Fairbrother
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • Platelet aggregation is associated with myocardial infarction and stroke. Here, the authors have conducted a whole genome sequencing association study on platelet aggregation, discovering a locus in RGS18, where enhancer assays suggest an effect on activity of haematopoeitic lineage transcription factors.

    • Ali R. Keramati
    • Ming-Huei Chen
    • Andrew D. Johnson
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13
  • Pooling participant-level genetic data into a single analysis can result in variance stratification, reducing statistical performance. Here, the authors develop variant-specific inflation factors to assess variance stratification and apply this to pooled individual-level data from whole genome sequencing.

    • Tamar Sofer
    • Xiuwen Zheng
    • Kenneth M. Rice
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-14
  • The influence of X chromosome genetic variation on blood lipids and coronary heart disease (CHD) is not well understood. Here, the authors analyse X chromosome sequencing data across 65,322 multi-ancestry individuals, identifying associations of the Xq23 locus with lipid changes and reduced risk of CHD and diabetes mellitus.

    • Pradeep Natarajan
    • Akhil Pampana
    • Gina M. Peloso
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-14
  • Chiral piperidines are of importance in drug synthesis, but effective and broadly applicable methods for their production remain scarce. Now, a reductive Rh-catalysed method is developed for the introduction of chiral primary amines into reduced pyridinium salts, affording optically active piperidines.

    • Jianjun Wu
    • Zhenyu Chen
    • Jianliang Xiao
    Research
    Nature Catalysis
    Volume: 5, P: 982-992
  • Dimethyl fumarate (DMF) is an anti-inflammatory drug proposed as a treatment for COVID19. Here the results are reported from a randomised trial testing DMF treatment in 713 patients hospitalised with COVID-19. DMF was not associated with any improvement in day 5 outcomes.

    • Peter Sandercock
    • Janet Darbyshire
    • Martin J. Landray
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • Analysis of 97,691 high-coverage human blood DNA-derived whole-genome sequences enabled simultaneous identification of germline and somatic mutations that predispose individuals to clonal expansion of haematopoietic stem cells, indicating that both inherited and acquired mutations are linked to age-related cancers and coronary heart disease.

    • Alexander G. Bick
    • Joshua S. Weinstock
    • Pradeep Natarajan
    Research
    Nature
    Volume: 586, P: 763-768
  • A novel variant annotation metric that quantifies the level of expression of genetic variants across tissues is validated in the Genome Aggregation Database (gnomAD) and is shown to improve rare variant interpretation.

    • Beryl B. Cummings
    • Konrad J. Karczewski
    • Daniel G. MacArthur
    ResearchOpen Access
    Nature
    Volume: 581, P: 452-458
  • The authors developed a deep learning-based model to estimate the brain age gap based on metabolic and structural imaging data in cognitively normal individuals and in patients with dementia. An older brain age was associated with Alzheimer’s disease biomarkers and was predictive of future cognitive decline.

    • Jeyeon Lee
    • Brian J. Burkett
    • David T. Jones
    Research
    Nature Aging
    Volume: 2, P: 412-424
  • A strategy for inferring phase for rare variant pairs is applied to exome sequencing data for 125,748 individuals from the Genome Aggregation Database (gnomAD). This resource will aid interpretation of rare co-occurring variants in the context of recessive disease.

    • Michael H. Guo
    • Laurent C. Francioli
    • Kaitlin E. Samocha
    Research
    Nature Genetics
    Volume: 56, P: 152-161
  • This large, multi-ethnic genome-wide association study identifies 97 loci significantly associated with atrial fibrillation. These loci are enriched for genes involved in cardiac development, electrophysiology, structure and contractile function.

    • Carolina Roselli
    • Mark D. Chaffin
    • Patrick T. Ellinor
    Research
    Nature Genetics
    Volume: 50, P: 1225-1233
  • A genomic constraint map for the human genome constructed using data from 76,156 human genomes from the Genome Aggregation Database shows that non-coding constrained regions are enriched for regulatory elements and variants associated with complex diseases and traits.

    • Siwei Chen
    • Laurent C. Francioli
    • Konrad J. Karczewski
    Research
    Nature
    Volume: 625, P: 92-100
  • Whole-genome bisulfite sequencing along with whole-genome and transcriptome sequencing of 100 prostate cancer metastases identifies genomic regions that are differentially methylated during disease progression and a novel epigenomic subtype.

    • Shuang G. Zhao
    • William S. Chen
    • Felix Y. Feng
    Research
    Nature Genetics
    Volume: 52, P: 778-789
  • Abnormal PR interval duration is associated with risk for atrial fibrillation and heart block. Here, van Setten et al. identify 44 PR interval loci in a genome-wide association study of over 92,000 individuals and find genetic overlap with QRS duration, heart rate and atrial fibrillation.

    • Jessica van Setten
    • Jennifer A. Brody
    • Nona Sotoodehnia
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-11
  • Patrick Ellinor and colleagues report a meta-analysis of genome-wide association studies for atrial fibrillation in European populations. They identify six newly associated loci, four of which were replicated in a Japanese study.

    • Patrick T Ellinor
    • Kathryn L Lunetta
    • Stefan Kääb
    Research
    Nature Genetics
    Volume: 44, P: 670-675
  • The dynamic components of coastal water level can add metres to water levels during extreme events. A data synthesis reveals that Pacific regional wave and water level fluctuations are closely related to the El Niño/Southern Oscillation.

    • Patrick L. Barnard
    • Andrew D. Short
    • Derek K. Heathfield
    Research
    Nature Geoscience
    Volume: 8, P: 801-807
  • Common genetic variants associated with plasma lipids have been extensively studied for a better understanding of common diseases. Here, the authors use whole-genome sequencing of 16,324 individuals to analyze rare variant associations and to determine their monogenic and polygenic contribution to lipid traits.

    • Pradeep Natarajan
    • Gina M. Peloso
    • Sebastian Zoellner
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-12
  • Circulating lipoprotein(a) is an important risk factor for cardiovascular disease and shows variability between different ethnic groups. Here, Zekavat et al. perform whole-genome sequencing in individuals of European and African ancestries and find ancestry-specific genetic determinants for lipoprotein(a) levels.

    • Seyedeh M. Zekavat
    • Sanni Ruotsalainen
    • Sebastian Zoellner
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-14
    • Jonathan Yates
    Comments & Opinion
    British Dental Journal
    Volume: 194, P: 581