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Showing 1–50 of 94 results
Advanced filters: Author: Mark S. P. Sansom Clear advanced filters
  • The thymus supports T cell immunity by providing the environment for thymocyte differentiation. Here the authors profile human thymic stroma at the single cell level, identifying ionocytes as a new medullary population and defining tissue specific antigen expression in multiple stromal cell types.

    • Jhoanne L. Bautista
    • Nathan T. Cramer
    • Audrey V. Parent
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • Translation initiation and elongation factors can be targets for cancer treatment. Here, the authors show that inhibiting translation elongation through eIF5A impairs mitochondrial function, slowing the proliferation of tumour cells.

    • Aristeidis P. Sfakianos
    • Rebecca M. Raven
    • Anne E. Willis
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • The structure of an intact colicin-la protein suggests that channel formation by this molecule may be more complex than previously suggested.

    • Mark S.P. Sansom
    News & Views
    Nature Structural Biology
    Volume: 1, P: 563-567
  • It remains critical to identify colorectal cancers (CRC) that will disseminate as early as possible. Here, the authors identify CRC tumours that are aggressive and prone to early dissemination, characterised by epithelial TGFβ and growth-factor signalling - which could be targeted with MEK/EGFR inhibitors.

    • Dustin J. Flanagan
    • Raheleh Amirkhah
    • Owen J. Sansom
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-18
  • Tertiary lymphoid structures play important roles during homeostatic but also immunopathological conditions including autoimmune disorders. Here the authors integrate single cell sequencing with spatial proteomics and transcriptomics to define a cellular and spatial map of tertiary lymphoid structures in salivary glands of patients with Sjogren’s syndrome.

    • Saba Nayar
    • Jason D. Turner
    • Francesca Barone
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • 2023 CX1 is the only L-chondrite-like asteroid analysed from space to ground. It catastrophically fragmented in the atmosphere, depositing 98% of its energy in one burst—an unusual, high-risk fragmentation mode with implications for planetary defence.

    • Auriane Egal
    • Denis Vida
    • Peter Jenniskens
    Research
    Nature Astronomy
    Volume: 9, P: 1624-1637
  • Unlike most inflammatory fibrotic conditions, frozen shoulder is a spontaneously self-resolving human disease. Here authors study samples from frozen shoulder capsules by single cell RNA sequencing and by microculture modelling of cell-cell interactions to conclude that specific macrophage populations and their interaction with fibroblasts might promote fibrosis resolution.

    • Michael T. H. Ng
    • Rowie Borst
    • Stephanie G. Dakin
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • Whole-genome sequencing analysis of individuals with primary immunodeficiency identifies new candidate disease-associated genes and shows how the interplay between genetic variants can explain the variable penetrance and complexity of the disease.

    • James E. D. Thaventhiran
    • Hana Lango Allen
    • Kenneth G. C. Smith
    Research
    Nature
    Volume: 583, P: 90-95
  • The chromatin-remodelling enzyme ATRX and the transcription factor HNF4A are identified as pivotal regulators of colonic epithelial identity, with roles in metastasis in colorectal cancer.

    • Patrizia Cammareri
    • Michela Raponi
    • Kevin B. Myant
    ResearchOpen Access
    Nature
    Volume: 644, P: 547-556
  • Right-sided colorectal cancer (rCRC) has a different mutational spectrum to the left-sided counterpart. Here the authors develop a mouse model of rCRC that recapitulates human BRAF-mutant rCRC and show that loss of TGFβ-receptor signalling and inflammation induce the development of colonic tumours with a foetal-like phenotype.

    • Joshua D. G. Leach
    • Nikola Vlahov
    • Owen J. Sansom
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • Stratified medicine promises to tailor treatment for individual patients, however it remains a major challenge to leverage genetic risk data to aid patient stratification. Here the authors introduce an approach to stratify individuals based on the aggregated impact of their genetic risk factor profiles on tissue-specific gene expression levels, and highlight its ability to identify biologically meaningful and clinically actionable patient subgroups, supporting the notion of different patient ‘biotypes’ characterized by partially distinct disease mechanisms.

    • Lucia Trastulla
    • Georgii Dolgalev
    • Michael J. Ziller
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-28
  • Otopetrins are proton channels and candidate sour taste receptors. Cryo-EM structures of zebrafish Otop1 and chicken Otop3 reveal potential proton conduction pathways.

    • Kei Saotome
    • Bochuan Teng
    • Andrew B. Ward
    Research
    Nature Structural & Molecular Biology
    Volume: 26, P: 518-525
  • Timothy Frayling, Joel Hirschhorn, Peter Visscher and colleagues report a meta-analysis of genome-wide association studies for adult height in 253,288 individuals. They identify 697 variants in 423 loci significantly associated with adult height and find that these variants cluster in pathways involved in growth and together explain one-fifth of the heritability for this trait.

    • Andrew R Wood
    • Tonu Esko
    • Timothy M Frayling
    Research
    Nature Genetics
    Volume: 46, P: 1173-1186
  • Flycatcher1 (FLYC1) is a candidate mechanosensitive channel involved in Venus flytrap touch-induced prey capture. Here, the authors report structural and functional details of FLYC1, with insights into gating conformational transitions.

    • Sebastian Jojoa-Cruz
    • Kei Saotome
    • Andrew B. Ward
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-11
  • Genome-wide association meta-analyses of waist-to-hip ratio adjusted for body mass index in more than 224,000 individuals identify 49 loci, 33 of which are new and many showing significant sexual dimorphism with a stronger effect in women; pathway analyses implicate adipogenesis, angiogenesis, transcriptional regulation and insulin resistance as processes affecting fat distribution.

    • Dmitry Shungin
    • Thomas W. Winkler
    • Karen L Mohlke
    Research
    Nature
    Volume: 518, P: 187-196
  • Our only direct information on the origin of vertebrates comes from preserved soft-bodied Cambrian chordates; however, reading this fossil record is fraught with difficulties owing to a lack of data on when and how important characters change as they decompose. Here, from experimental decay of amphioxus and ammocoetes, it is shown that loss of chordate characters during decay is non-random, with the features that are most phylogenetically informative tending to decay first.

    • Robert S. Sansom
    • Sarah E. Gabbott
    • Mark A. Purnell
    Research
    Nature
    Volume: 463, P: 797-800
  • K2P potassium channels have a structure dissimilar to other potassium channels. Here, the authors study the K2P channel TWIK-1 and show that the protein contains a deep pore hydrophobic barrier that blocks ion channel conductance.

    • Prafulla Aryal
    • Firdaus Abd-Wahab
    • Stephen J. Tucker
    ResearchOpen Access
    Nature Communications
    Volume: 5, P: 1-9
  • Analysis of colorectal cancer bulk gene expression data at the pathway level identifies a poor-prognosis subtype associated with cell differentiation. The subtypes are reproducible in single-cell data and offer biological insights beyond existing stratification strategies.

    • Sudhir B. Malla
    • Ryan M. Byrne
    • Philip D. Dunne
    ResearchOpen Access
    Nature Genetics
    Volume: 56, P: 458-472
  • Voltage-gated potassium channels open and close in response to changes in transmembrane potential, but their opening mechanism is poorly understood. Here, free energy molecular dynamics simulations show that strain accumulates as the pore closes, which subsequently drives opening.

    • Philip W. Fowler
    • Mark S. P. Sansom
    ResearchOpen Access
    Nature Communications
    Volume: 4, P: 1-8
  • Re-examination of the presumed Cambrian fossil fish Anatolepis reveals previous misidentification of aglaspidid sensory structures as dentine, a vertebrate sensory tissue, showing it to be an arthropod, and shifting the origin of vertebrate hard tissues to the Middle Ordovician.

    • Yara Haridy
    • Sam C. P. Norris
    • Neil H. Shubin
    ResearchOpen Access
    Nature
    Volume: 642, P: 119-124
  • A genome-wide association study and Metabochip meta-analysis of body mass index (BMI) detects 97 BMI-associated loci, of which 56 were novel, and many loci have effects on other metabolic phenotypes; pathway analyses implicate the central nervous system in obesity susceptibility and new pathways such as those related to synaptic function, energy metabolism, lipid biology and adipogenesis.

    • Adam E. Locke
    • Bratati Kahali
    • Elizabeth K. Speliotes
    Research
    Nature
    Volume: 518, P: 197-206
  • Dietary serine and glycine starvation has emerged as a potential therapy for cancer. Here, the authors show that inhibition of PHGDH, which mediates the first step in the serine synthesis pathway, improves the therapeutic efficacy of serine depletion diet in mouse xenograft models.

    • Mylène Tajan
    • Marc Hennequart
    • Karen H. Vousden
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-16
  • A genetic study identifies hundreds of loci associated with risk tolerance and risky behaviors, finds evidence of substantial shared genetic influences across these phenotypes, and implicates genes involved in neurotransmission.

    • Richard Karlsson Linnér
    • Pietro Biroli
    • Jonathan P. Beauchamp
    Research
    Nature Genetics
    Volume: 51, P: 245-257
  • Structural studies show that the activity of the G-protein-coupled receptor Smoothened is modulated by ligand-regulated interactions between its extracellular and transmembrane domains.

    • Eamon F. X. Byrne
    • Ria Sircar
    • Christian Siebold
    Research
    Nature
    Volume: 535, P: 517-522
  • Native mass spectrometry has been used to interrogate both biased signalling and allosteric modulation of the β1-adrenergic receptor. Simultaneously capturing the effects of ligand binding and receptor coupling to different G proteins has enabled the relative importance of specific interactions to be investigated.

    • Hsin-Yung Yen
    • Idlir Liko
    • Carol V. Robinson
    ResearchOpen Access
    Nature Chemistry
    Volume: 14, P: 1375-1382
  • Glutamine synthetase is the only enzyme that synthesizes glutamine in mammals. In vivo metabolomics showed that glutamine synthetase utilizes methylamine to produce N5-methylglutamine, whose levels correlate with tumor burden in a β+catenin+mutant liver cancer model.

    • Victor H. Villar
    • Maria Francesca Allega
    • Saverio Tardito
    ResearchOpen Access
    Nature Chemical Biology
    Volume: 19, P: 292-300
  • Although DNA nanopores are widely explored as synthetic membrane proteins, it is still unclear how the anionic DNA assemblies stably reside within the hydrophobic core of a lipid bilayer. Here, the authors use molecular dynamics simulations to reveal the key dynamic interactions and energetics stabilizing the nanopore-membrane interaction.

    • Vishal Maingi
    • Jonathan R. Burns
    • Mark S. P. Sansom
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-12
  • Vitamin D deficiency is associated with multiple human pathologic conditions. In a genome-wide association study of 79,366 individuals, Jiang et al. replicate four and identify two new genetic loci for serum levels of 25-hydroxyvitamin D and find evidence for a shared genetic basis with autoimmune diseases.

    • Xia Jiang
    • Paul F. O’Reilly
    • Douglas P. Kiel
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-12
  • There are currently a lack of tools to detect heterogeneity in 3D cultures. Here the authors report Traject3d as a framework to identify heterogeneous states in 3D culture and to understand how these give rise to distinct phenotypes using label-free multi-day time-lapse imaging.

    • Eva C. Freckmann
    • Emma Sandilands
    • David M. Bryant
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-21
  • In Escherichia coli, outer membrane protein (OMP) cluster and form islands, but the origin and behaviour of those clusters remains poorly understood. Here authors use coarse grained molecular dynamics simulation and show that their mesoscale simulations recapitulate the restricted diffusion characteristics of OMPs.

    • Matthieu Chavent
    • Anna L. Duncan
    • Mark S. P. Sansom
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-12
  • In this study, Vande Voorde et al. investigate the potential of untargeted metabolomics as a stratification tool for colorectal cancer (CRC). They present a comprehensive pipeline to uncover metabolic vulnerabilities in CRC based on its genetic origin. With this approach, they show perturbations in methionine metabolism linked to APC deficiency, and identify adenosylhomocysteinase as an actionable therapeutic target.

    • Johan Vande Voorde
    • Rory T. Steven
    • Owen J. Sansom
    ResearchOpen Access
    Nature Metabolism
    Volume: 5, P: 1303-1318
  • RAC1 is a downstream target of the Wnt signaling that promotes intestinal stem cell expansion and tumorigenesis. Here, the authors identify the specific splice variant RAC1B as an important mediator of colorectal tumourigenesis and a potential target for enhancing the efficacy of EGFR inhibitor treatment.

    • Victoria Gudiño
    • Sebastian Öther-Gee Pohl
    • Kevin B. Myant
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-17
  • Hv1 voltage-gated proton channels lack a canonical pore domain and selectivity filter, suggesting the mechanism of permeation differs from other cation channels. Mutagenesis with conductance measurements coupled with molecular dynamics simulations now indicate that Hv1 has an internal water wire mediating selective H+ transport.

    • I Scott Ramsey
    • Younes Mokrab
    • David E Clapham
    Research
    Nature Structural & Molecular Biology
    Volume: 17, P: 869-875
  • An integrated genomic analysis of 456 human pancreatic ductal adenocarcinomas identifies four subtypes defined by transcriptional expression profiles and show that these are associated with distinct histopathological characteristics and differential prognosis.

    • Peter Bailey
    • David K. Chang
    • Sean M. Grimmond
    Research
    Nature
    Volume: 531, P: 47-52
  • Bacterial O antigen polysaccharides play a role in innate immune response evasion. Here, the authors uncover the ATP-bound structure of the Aquifex aeolicus WzmWzt O antigen ABC transporter, shedding light onto the mechanism of lipid-linked polysaccharide translocation.

    • Christopher A. Caffalette
    • Robin A. Corey
    • Jochen Zimmer
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • Glycinergic synapses play a central role in motor control and pain processing in the central nervous system. Here, authors present cryo-EM structures of the full-length glycine receptors (GlyRs) reconstituted into lipid nanodiscs in the unliganded, glycine-bound and allosteric modulator-bound conformations and reveal global conformational changes underlying GlyR channel gating and modulation.

    • Arvind Kumar
    • Sandip Basak
    • Sudha Chakrapani
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14