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Showing 1–50 of 156 results
Advanced filters: Author: Martin J. Menten Clear advanced filters
  • The oomycete Phytophthora infestans is a damaging crop pathogen. Here, the authors show that a group of P. infestans secreted enzymes play roles in penetration and colonization of host plants by oxidising fragments of the polysaccharide pectin in the plant cell wall.

    • Lydia R. J. Welsh
    • Anna O. Avrova
    • Federico Sabbadin
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • The preparation of functionalized amino acids from inexpensive aldehydes is challenging. This work describes the biocatalytic synthesis of l-methionine by applying gaseous CO2 pressure and a coupled amination step to drive the unfavoured equilibrium of a reverse carboxylation reaction.

    • Julia Martin
    • Lukas Eisoldt
    • Arne Skerra
    Research
    Nature Catalysis
    Volume: 1, P: 555-561
  • Active fluids that consume local fuels to generate movements can be utilized to promote mixing in microfluidic devices. Here, Bate et al. show a transition from diffusion-like to superdiffusion-like behaviours with mixing efficacy depending on the Péclet number and spatial distribution of activities.

    • Teagan E. Bate
    • Megan E. Varney
    • Kun-Ta Wu
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-14
  • Friedrich Luft and colleagues identify missense mutations in PDE3A in six unrelated families with an autosomal dominant syndrome marked by severe hypertension and brachydactyly. They further show that the mutations result in gain of enzymatic function, leading to increased vascular smooth muscle cell proliferation and vessel wall hyperplasia.

    • Philipp G Maass
    • Atakan Aydin
    • Sylvia Bähring
    Research
    Nature Genetics
    Volume: 47, P: 647-653
  • The development of innovative strategies for the capture and biodegradation of nanoplastics is sought after. Now, artificial hydrolytic active sites are incorporated into non-catalytic membrane nanopores generating pore-based biocatalytic nanoreactors that depolymerize polyethylene terephthalate plastic nanoparticles.

    • Ana Robles-Martín
    • Rafael Amigot-Sánchez
    • Víctor Guallar
    ResearchOpen Access
    Nature Catalysis
    Volume: 6, P: 1174-1185
  • RNA repair helps bacteria survive antibiotic stress. Here, authors show that Rtc-driven repair causes cell-to-cell variation in resistance levels, revealing a potential form of heteroresistance, and identify key Rtc targets to enhance antibiotic effectiveness.

    • Hollie J. Hindley
    • Zechuan Gong
    • Andrea Y. Weiße
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Here, Arkinson et al. reconstitute NUB1-mediated FAT10 degradation by the human 26S proteasome and use biochemistry, cryo-EM and hydrogen–deuterium exchange to show that NUB1 acts as an ATP-independent chaperone to trap partially folded FAT10 for proteasome delivery.

    • Connor Arkinson
    • Ken C. Dong
    • Andreas Martin
    ResearchOpen Access
    Nature Structural & Molecular Biology
    Volume: 32, P: 1752-1765
  • Rare mutations in the high requirement temperature protein A1 (HTRA1) cause cerebral vasculopathy. Here, authors establish mechanistically distinct protein repair approaches to reverse the deleterious effects of pathogenic mutations interfering with the assembly and protease function of HTRA1.

    • Nathalie Beaufort
    • Linda Ingendahl
    • Martin Dichgans
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-18
  • The protein translation machinery is the most expensive cellular subsystem in fast growing bacteria. Providing a detailed mechanistic model for this complex system, the authors show that the translation machinery components are expressed such that their combined cost to the cell is minimal.

    • Xiao-Pan Hu
    • Hugo Dourado
    • Martin J. Lercher
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • The Zika viral protease NS2B-NS3 is a crucial target for antiviral drug development due to its role in processing viral polyproteins. Here, the authors utilize crystallographic fragment screening and deep mutational scanning to identify binding sites for resistance-resilient inhibitors.

    • Xiaomin Ni
    • R. Blake Richardson
    • Frank von Delft
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • The authors report observations of recently formed dust and molecular gas in the atmosphere of IRC+10°216 and interpret HCN, SiS and SiC2 lines as large convective cells in the photosphere, as seen in Betelgeuse.

    • L. Velilla-Prieto
    • J. P. Fonfría
    • J. Cernicharo
    Research
    Nature
    Volume: 617, P: 696-700
  • Rpn11, the only essential deubiquitinase (DUB) of the 26S proteasome, sits at the top of the substrate entry pathway and facilitates substrate degradation through cotranslocational deubiquitination. The structure of the Rpn11–Rpn8 complex, together with functional assays, offers insight into Rpn11's promiscuous DUB activity during proteasomal degradation.

    • Evan J Worden
    • Chris Padovani
    • Andreas Martin
    Research
    Nature Structural & Molecular Biology
    Volume: 21, P: 220-227
  • The bacterial AAA+ ClpX unfolds substrates using the energy from ATP hydrolysis and delivers them to the associated protease ClpP. A loop with an aromatic-hydrophobic motif protrudes into the central pore of the ClpX hexamer and was known to be important for activity. Now mutational analysis using covalently linked subunits provides evidence that this loop actually grips the substrate and undergoes conformational changes to drive its translocation and unfolding.

    • Andreas Martin
    • Tania A Baker
    • Robert T Sauer
    Research
    Nature Structural & Molecular Biology
    Volume: 15, P: 1147-1151
  • Protein kinase transition between different conformational states is controlled by autophosphorylation. Here, the authors demonstrate that the c-terminal Tyr530 is a de facto c-Src autophosphorylation site  and identify a critical c-terminal palindromic phospho-motif that controls the interplay between substrate and enzyme-acting kinases during autophosphorylation.

    • Hipólito Nicolás Cuesta-Hernández
    • Julia Contreras
    • Iván Plaza-Menacho
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-21
  • Genome-scale models of microbial metabolism largely ignore reaction kinetics. Here, the authors develop a general mathematical framework for modeling cellular growth with explicit non-linear reaction kinetics and use it to glean insights into the principles of cellular resource allocation and growth.

    • Hugo Dourado
    • Martin J. Lercher
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • The bacterial insertase BAM is a key target for novel antibiotics that are urgently needed. Here, we describe the implementation of an assay that allows screening for BAM inhibitors in the native membrane in high-throughput format.

    • Parthasarathi Rath
    • Adrian Hermann
    • Sebastian Hiller
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-11
  • Photoreceptor proteins utilise biological chromophores to regulate a large range of cellular processes in response to light. Here the authors identify and characterise a sub-family of multi-centre photoreceptors, termed photocobilins, that not only utilise B12 but also contain biliverdin (BV) as an additional chromophore.

    • Shaowei Zhang
    • Laura N. Jeffreys
    • Nigel S. Scrutton
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-16
  • For many enzymes, it is unknown which primary and/or secondary reactions they catalyze. Here, the authors use machine and deep learning to develop a general model for the prediction of enzyme-small molecule substrate pairs and make the resulting model available through a webserver.

    • Alexander Kroll
    • Sahasra Ranjan
    • Martin J. Lercher
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-13
  • Ruminococcus gnavus is a mucus-associated gut commensal that can release the sialic acid, 2,7-anhydro-Neu5Ac. Here, the authors identify the pathway for its transportation and metabolism in R. gnavus, and show that this pathway is essential for its spatial localization in vivo.

    • Andrew Bell
    • Jason Brunt
    • Nathalie Juge
    Research
    Nature Microbiology
    Volume: 4, P: 2393-2404
  • How do low-mass binaries age? Astronomers have constrained a tight, circular orbit of a close-in companion around a dying giant star, raising new questions about how tidal forces shape binary orbits in the final phases of stellar evolution.

    • Mats Esseldeurs
    • Leen Decin
    • Ka Tat Wong
    Research
    Nature Astronomy
    Volume: 10, P: 124-143
  • Plasmodium falciparum chloroquine resistance transporter (PfCRT) mediates multidrug resistance, but its natural function remains unclear. Here, Shafik et al. show that PfCRT transports host-derived peptides of 4-11 residues but not other ions or metabolites, and that drug-resistance-conferring PfCRT mutants have reduced peptide transport.

    • Sarah H. Shafik
    • Simon A. Cobbold
    • Rowena E. Martin
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • The RNA methyltransferase activity of SPOUT1/CENP-32 is crucial for accurate mitotic spindle organization. Here, the authors describe a neurodevelopmental disorder caused by bi-allelic pathogenic SPOUT1 variants with reduced activity and compromised function in spindle organization.

    • Avinash V. Dharmadhikari
    • Maria Alba Abad
    • Jun Liao
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-24
  • Affinity chromatography allows for the separation of biomolecules such as proteins, based on a change in the chemical solvent composition and the resulting impacts on ligand binding. Here, authors introduce a physical principle by exploiting the light-dependent interaction between the Azo-tag and an α- CD chromatography matrix.

    • Peter Mayrhofer
    • Markus R. Anneser
    • Arne Skerra
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-18
  • Thiol-disulfide exchange is an extensively used reversible reaction in dynamic combinatorial chemistry, but usually requires long time to reach equilibrium. Here, the authors employ selenocystine as a catalyst of thiol-disulfide exchange at low temperatures and basic pH, and show that it can promote disulfide bond formation during folding of a scrambled RNase A.

    • Andrea Canal-Martín
    • Ruth Pérez-Fernández
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-12
  • Plant pathogens translocate type III effector (T3E) proteins that may be recognized by plants to trigger immunity. Here, the authors show that the Xanthomonas T3E XopH possesses a novel 1-phytase activity that is required for XopH-mediated immunity of plants carrying the Bs7 resistance gene.

    • Doreen Blüher
    • Debabrata Laha
    • Ulla Bonas
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-14
  • Atmospheric methane-oxidizing bacteria constitute the sole biological sink for atmospheric methane. Here, Schmider et al. assess the ability and strategies of seven methanotrophic species to grow with air as sole energy, carbon, and nitrogen source, showing that these bacteria can grow on the trace concentrations of methane, carbon monoxide, and hydrogen present in air.

    • Tilman Schmider
    • Anne Grethe Hestnes
    • Alexander T. Tveit
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Trees come in all shapes and size, but what drives this incredible variation in tree form remains poorly understood. Using a global dataset, the authors show that a combination of climate, competition, disturbance and evolutionary history shape the crown architecture of the world’s trees and thereby constrain the 3D structure of woody ecosystems.

    • Tommaso Jucker
    • Fabian Jörg Fischer
    • Niklaus E. Zimmermann
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Ubiquitin modification also occurs in archaea. Here, the authors characterize an archaeal ancestral ubiquitination system, present the crystal structure of the archaeal deubiquitinase Rpn11 from Caldiarchaeum subterraneum bound to ubiquitin and provide insights into evolutionary relationships.

    • Adrian C. D. Fuchs
    • Lorena Maldoner
    • Jörg Martin
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-12
  • A combination of structural and protein-chemistry approaches along with phylogenetic analyses provide insights into the specific activities of mouse tubulin tyrosine ligase-like enzymes as initiases or elongases of glutamylation.

    • Kishore K. Mahalingan
    • E. Keith Keenan
    • Antonina Roll-Mecak
    Research
    Nature Structural & Molecular Biology
    Volume: 27, P: 802-813
  • The COP9 signalosome (CSN) complex regulates cullin–RING E3 ubiquitin ligases—the largest class of ubiquitin ligase enzymes, which are involved in a multitude of regulatory processes; here, the crystal structure of the entire human CSN holoenzyme is presented.

    • Gondichatnahalli M. Lingaraju
    • Richard D. Bunker
    • Nicolas H. Thomä
    Research
    Nature
    Volume: 512, P: 161-165
  • X-ray crystallographic analyses of KDM5B provide a view of the enzyme's iron(II)- and 2-oxoglutarate-containing catalytic core, and structures of KDM5B complexes with small-molecule inhibitors reveal selectivity profiles for multiple compound chemotypes.

    • Catrine Johansson
    • Srikannathasan Velupillai
    • Udo Oppermann
    Research
    Nature Chemical Biology
    Volume: 12, P: 539-545
  • The ability to induce metabolic pathways in response to a changing environment is an important component of bacterial fitness. Bartl et al. identify optimal programmes for metabolic pathway activation depending on protein synthesis capacity constraints, and demonstrate their impact on operonic organization.

    • Martin Bartl
    • Martin Kötzing
    • Christoph Kaleta
    Research
    Nature Communications
    Volume: 4, P: 1-9
  • NanoLuc luciferase is a popular bioluminescent enzyme, but the molecular details of its mechanism of action on luciferins such as coelenterazine remained elusive. Here the authors use, protein crystal structures and biochemical analyses to provide an atomistic description of its catalytic mechanism and allosteric behaviour.

    • Michal Nemergut
    • Daniel Pluskal
    • Martin Marek
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-20
  • Alien species of animals and plants can invade new regions of the earth. This study performs a global analysis of temporal dynamics and spatial patterns of alien species introductions over the past 200 years, and reports no saturation in the rate at which these invasion are increasing.

    • Hanno Seebens
    • Tim M. Blackburn
    • Franz Essl
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-9
  • The introduction of fluorine into a drug molecule can alter the biological responses to it, including modulating bioavailability, pharmacokinetics and selectivity. Now, a hybrid polyketide/fatty acid synthase multienzyme has been designed to incorporate fluorinated precursors during polyketide biosynthesis in an approach that provides new chemoenzymatic access to fluorinated natural compounds.

    • Alexander Rittner
    • Mirko Joppe
    • Martin Grininger
    Research
    Nature Chemistry
    Volume: 14, P: 1000-1006
  • Glycolytic enzymes are challenging drug targets due to their highly conserved active sites and phosphorylated substrates. Here, the authors identify fast acting allosteric inhibitors of Trypanosoma brucei phosphofructokinase that block trypanosome glycolysis and provide cure evidence in murine model.

    • Iain W. McNae
    • James Kinkead
    • Malcolm D. Walkinshaw
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-10