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Showing 1–50 of 246 results
Advanced filters: Author: Stefan Nagel Clear advanced filters
  • Pathogenic BRCA2 truncating variants in heterozygosis drive distinct cancer-linked mechanisms. Here the authors show that one causes PARPi sensitivity and HR loss via haploinsufficiency, while another expresses a truncated protein that rewires transcription by hijacking PCAF, reducing H4 acetylation and NF-κB activity.

    • Anna Minello
    • Jesus Gomez-Escudero
    • Aura Carreira
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-22
  • The authors demonstrate a proof-of-principle example of an NH-π hydrogen bond on the surface of an intrinsically disordered protein through detection of weak scalar couplings by NMR, supported by Molecular Dynamics simulation and DFT calculations.

    • Luigi Russo
    • Dipendu Dhar
    • Nasrollah Rezaei-Ghaleh
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • Here authors identify GluN2D-containing NMDA receptors on interneurons as a specific target for rapid antidepressant action. Blocking GluN2D restores stress-impaired plasticity and mimics the effects of ketamine with fewer side effects.

    • Stefan Vestring
    • Maxime Veleanu
    • Claus Normann
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-26
  • Here, the authors present the cryoEM structure of the sodium-translocating methyltransferase (Mtr) complex from Methanosarcina mazei. Along with providing catalytic insights, they identify MtrI, an unannotated small protein, bound to the Mtr complex in a redox-dependent manner.

    • Tristan Reif-Trauttmansdorff
    • Eva Herdering
    • Jan M. Schuller
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-14
  • Tree longevity is thought to increase in harsh environments, but global evidence of drivers is lacking. Here, the authors find two different pathways for tree longevity: slow growth in resource limited environments and increasing tree stature and/or slow growth in competitive environments.

    • Roel J. W. Brienen
    • Giuliano Maselli Locosselli
    • Chunyu Zhang
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-14
  • Highly pathogenic avian influenza H5N1 viruses cause mass mortality in birds and have infected over 50 mammalian species, including humans. Here, the authors report the use of a propagation-defective vesicular stomatitis virus replicon vaccine in captive birds, which provides protection against lethal H5N1 challenge.

    • Marion Stettler
    • Stefan Hoby
    • Gert Zimmer
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Systematic base-editing and computational screens identify specific cysteine residues on VPS35 in the retromer complex as key sensors that decrease mitochondrial translation in response to reactive oxygen species signals.

    • Junbing Zhang
    • Md Yousuf Ali
    • Liron Bar-Peled
    Research
    Nature
    Volume: 641, P: 1048-1058
  • A study by Kibe et al. of the translational landscape of HIV-1 reveals alternative translation events, including use of upstream and internal open reading frames, an RNA fold regulating gag-pol frameshifting and ribosome collisions, providing new targets for antivirals.

    • Anuja Kibe
    • Stefan Buck
    • Neva Caliskan
    ResearchOpen Access
    Nature Structural & Molecular Biology
    Volume: 32, P: 841-852
  • MERS-CoV is enzootic in dromedary camels, can spread to humans but undergoes limited onward transmission. Here, Schroeder et al. compare clinical isolates of MERS-CoV in vitro and show that the predominantly circulating recombinant lineage 5 possess a fitness advantage over parental lineage 3 and 4 due to reduced activation of innate immune signaling.

    • Simon Schroeder
    • Christin Mache
    • Christian Drosten
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13
  • Prions are infectious agents that initiate transmissible spongiform encephalopathies. The study demonstrates that Prion proteins lower cellular oxidative stress via GPX8, remodel membrane lipids, and together with RAC3, sensitize cells to ferroptotic death, highlighting new therapeutic targets in prion diseases.

    • Hao Peng
    • Susanne Pfeiffer
    • Joel A. Schick
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Decoding the role of inter-chromosomal DNA-DNA interactions remains challenging. Here, the authors use Micro-C to study the T. brucei genome architecture at high resolution and reveal an intricate network of inter-chromosomal transcription hub structures.

    • Claudia Rabuffo
    • Markus R. Schmidt
    • T. Nicolai Siegel
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-18
  • XPD is part of the TFIIH complex which plays major roles in transcription initiation and nucleotide excision repair (NER). Here the authors present a high-resolution crystal structure of the XPD-MAT1 interface and dissect the role of this interface in transcription and NER.

    • Stefan Peissert
    • Florian Sauer
    • Caroline Kisker
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Heissmeyer and colleagues show that TCR stimulation-induced cell death is controlled by N6-methyladenosine (m6A) modification of Orai1 and Ripk1 mRNAs. m6A is deposited by a ‘writer’ complex of Wtap and the N6-methyltransferase and bound by the ‘reader’ protein Ythdf2. T cells lacking Wtap exhibit enhanced Ca2+ entry in response to TCR ligation and decreased survival due to activation-induced cell death.

    • Taku Ito-Kureha
    • Cristina Leoni
    • Vigo Heissmeyer
    Research
    Nature Immunology
    Volume: 23, P: 1208-1221
  • Innate lymphoid cells (ILC) are involved with different immune responses. Here the authors show that Interferon regulatory factor 1 (IRF1) is important for intestinal ILC3 accumulation during Citrobacter rodentium infection and promotes release of the protective cytokine IL-22 and response to IL-23.

    • Angelika Schmalzl
    • Tamara Leupold
    • Stefan Wirtz
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-15
  • The authors use lineage tracing to map the fate of wild-type and Brca1−/−;Trp53−/− cells in the adult mouse mammary gland, identifying three layers of protection that limit the spread of mutant cells at the expense of allowing a minority of mutant cells to expand, which leads to field cancerization.

    • Marta Ciwinska
    • Hendrik A. Messal
    • Jacco van Rheenen
    ResearchOpen Access
    Nature
    Volume: 633, P: 198-206
  • MYCN amplification is common in neuroblastomas. Here the authors analyse the MYCN amplicon structure and its epigenetic regulation by integrating short- and longread genomic and epigenomic data and find two classes of MYCN amplicons in neuroblastomas, one driven by local enhancers and the other by hijacking of distal regulatory elements.

    • Konstantin Helmsauer
    • Maria E. Valieva
    • Richard P. Koche
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • The expansion of the white adipose tissue during obesity is accompanied by increased cellular stress, but factors that protect adipocytes from cell death are not well known. Here the authors report that the transcriptional co-activators YAP and TAZ are activated in adipocytes during obesity, which increases adipocyte survival through the proapoptotic factor BIM.

    • Lei Wang
    • ShengPeng Wang
    • Stefan Offermanns
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Two species of auxotrophic marine bacteria are shown to share precursors to synthesize the essential cofactor vitamin B12, and such ligand cross-feeding may be a common phenomenon in the ocean and other ecosystems.

    • Gerrit Wienhausen
    • Cristina Moraru
    • Meinhard Simon
    Research
    Nature
    Volume: 629, P: 886-892
  • Sarcomas are a group of mesenchymal malignancies which are molecularly heterogeneous. Here, the authors develop an in vivo muscle electroporation system for gene delivery to generate distinct subtypes of orthotopic genetically engineered mouse models of sarcoma, as well as syngeneic allograft models with scalability for preclinical assessment of therapeutics.

    • Roland Imle
    • Daniel Blösel
    • Ana Banito
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • Alternative lengthening of telomeres (ALT) is associated with a poor outcome in neuroblastoma. Here, the authors find that ALT is associated with mutated ATRX and/or reduced protein abundance, frequent telomeric repeat loci and heterochromatic telomeric chromatin.

    • Sabine A. Hartlieb
    • Lina Sieverling
    • Frank Westermann
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-18
  • A quantitative atlas of the transcriptomes, proteomes and phosphoproteomes of 30 tissues of the model plant Arabidopsis thaliana provides a valuable resource for plant research.

    • Julia Mergner
    • Martin Frejno
    • Bernhard Kuster
    Research
    Nature
    Volume: 579, P: 409-414
  • Glomerulonephritis is a frequent complication of autoimmune diseases, and involves aberrant activation of immune cells, but the underlying insights remain unclear. Here the authors use both patient data and a mouse glomerulonephritis model to show that increased type I interferon may expand a subset of pro-inflammatory T cells for subsequent kidney pathology.

    • Huiying Wang
    • Jonas Engesser
    • Nariaki Asada
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Zuhra and Petrosino et al. report evidence that cyanide acts as a regulatory gasotransmitter in mammalian cells, where it is shown to affect cellular bioenergetics, most likely via protein S-cyanylation.

    • Karim Zuhra
    • Maria Petrosino
    • Csaba Szabo
    ResearchOpen Access
    Nature Metabolism
    Volume: 7, P: 531-555
  • FR900359 (FR) is a Gq protein inhibitor depsipeptide isolated from an uncultivable plant endosymbiont and synthesized by non-ribosomal peptide synthetases. Here, the authors discover a cultivable bacterial FR producer and show that FrsA thioesterase domain catalyses intermolecular transesterification of the FR side chain to the depsipeptide core during biosynthesis, improving Gq inhibition properties.

    • Cornelia Hermes
    • René Richarz
    • Max Crüsemann
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-12
  • Using bulk heart transcriptomics of rat models of right and left ventricle failure, Jurida et al. examined transcriptional changes in cardiomyocytes during the progression of heart failure and the overlap with transcriptomics from humans with chronic thromboembolic pulmonary hypertension (CTEPH), identifying more than 50 genes whose expression levels correlate with the severity of right heart disease.

    • Liane Jurida
    • Sebastian Werner
    • Michael Kracht
    ResearchOpen Access
    Nature Cardiovascular Research
    Volume: 3, P: 819-840
  • A systems-level map of the Arabidopsis hormone signalling network, comprising more than 2,000 binary protein–protein interactions, reveals hundreds of interpathway contact points, many of which mediate crosstalk between different hormone pathways.

    • Melina Altmann
    • Stefan Altmann
    • Pascal Falter-Braun
    Research
    Nature
    Volume: 583, P: 271-276
  • Using data from a single time point, passenger-approximated clonal expansion rate (PACER) estimates the fitness of common driver mutations that lead to clonal haematopoiesis and identifies TCL1A activation as a mediator of clonal expansion.

    • Joshua S. Weinstock
    • Jayakrishnan Gopakumar
    • Siddhartha Jaiswal
    Research
    Nature
    Volume: 616, P: 755-763
  • The mechanisms of intratumoral subtype heterogeneity in pancreatic ductal adenocarcinoma (PDAC) remain unclear. Here, the authors analyse PDAC tumours and preclinical models using multi-omics and imaging; they demonstrate that AP1 dichotomy influences tumor plasticity, heterogeneity, and immune response, with potential therapeutic implications.

    • Lukas Klein
    • Mengyu Tu
    • Shiv K. Singh
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • Targeting the interaction between transcription factor TEAD and its co-repressor VGL4 is an attractive strategy to chemically modulate Hippo signaling. Here, the authors develop a proteomimetic with stabilized tertiary structure that inhibits the TEAD:VGL4 interaction in vitro and in cells.

    • Hélène Adihou
    • Ranganath Gopalakrishnan
    • Herbert Waldmann
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • The cellular functions of poly-SUMO chains of different compositions are not fully understood. Here, the authors characterize Arkadia/RNF111 as a SUMO-targeted ubiquitin ligase that recognizes proteins with hybrid SUMO1-capped SUMO2/3 chains and targets them for proteasomal degradation.

    • Annie M. Sriramachandran
    • Katrin Meyer-Teschendorf
    • R. Jürgen Dohmen
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-12
  • The structure and function of the MCR activation complex from Methanococcus maripaludis were revealed, demonstrating its ATP-dependent ability to activate MCR and form methane while uncovering a unique electron transfer pathway involving iron–sulfur clusters similar to the nitrogenase cofactor intermediates.

    • Fidel Ramírez-Amador
    • Sophia Paul
    • Jan Michael Schuller
    ResearchOpen Access
    Nature
    Volume: 642, P: 814-821
  • Focusing on two ill-characterized subtypes of medulloblastoma (group 3 and group 4), this study identifies prevalent genomic structural variants that are restricted to these two subtypes and independently bring together coding regions of GFI1 family proto-oncogenes with active enhancer elements, leading to their mutually exclusive oncogenic activation.

    • Paul A. Northcott
    • Catherine Lee
    • Stefan M. Pfister
    Research
    Nature
    Volume: 511, P: 428-434
  • The implementation of RNA viral transfection technology in multiple plant species allows transient expression or silencing of specific regulatory genes in various regulatory circuits to rapidly fine-tune multiple traits without modifying the genome.

    • Stefano Torti
    • René Schlesier
    • Yuri Gleba
    Research
    Nature Plants
    Volume: 7, P: 159-171
  • Over half the world’s rivers dry periodically, yet little is known about the biological communities in dry riverbeds. This study examines biodiversity across 84 non-perennial rivers in 19 countries using DNA metabarcoding. It finds that nutrient availability, climate and biotic interactions influence the biodiversity of these dry environments.

    • Arnaud Foulquier
    • Thibault Datry
    • Annamaria Zoppini
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Many natural products exist as families of structurally similar molecules, and therefore developing skeletal modifications of common intermediates offers flexible and powerful approaches for target synthesis. Here, the authors report a single-atom insertion into the framework of the benzenoid subfamily, providing access to the troponoid congeners.

    • Stefan Wiesler
    • Goh Sennari
    • Richmond Sarpong
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-8
  • The cryo-EM structure of the γ-tubulin ring complex (γ-TuRC) from Xenopus laevis provides insights into the molecular organization of the complex, and shows that actin is a structural component that is functionally relevant to microtubule nucleation.

    • Peng Liu
    • Erik Zupa
    • Elmar Schiebel
    Research
    Nature
    Volume: 578, P: 467-471
  • Secondary lymphedema occurs frequently following oncologic surgery, but treatments are still lacking. Here the authors show, using both human samples and mouse models, that anti-CTLA4 mAb helps prevent edema and preserve lymphatic functions with corresponding expansion of Treg cells, thereby hinting anti-CTLA4 as a potential treatment option.

    • Stefan Wolf
    • Matiar Madanchi
    • Epameinondas Gousopoulos
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15