Abstract
Short-chain fatty acids (SCFAs) have been proposed to have anti-inflammatory effects and improve immune homeostasis. We aimed to examine the effects of SCFAs on skin phenotype, systemic inflammation, and gut microbiota in mice with psoriasis-like inflammation. Imiquimod (IMQ)-treated C57BL/6 mice served as the study model. We conducted a metagenomic association study of IMQ-mice treated with SCFAs or anti-IL-17 antibody using whole-genome shotgun sequencing. The associations among SCFA supplements, skin thickness, circulating inflammatory profiles, and fecal microbiota profiles were investigated. The microbiome study was performed using pipelines for phylogenetic analysis, functional gene analysis, and pathway analysis. In IMQ-treated mice, there were increases in skin thickness and splenic weight, as well as unique fecal microbial profiles. SCFAs ameliorated IMQ-induced skin thickening, splenic weight gain, and serum IL-17F levels, with results that were comparable with those receiving anti-IL-17 treatment. IMQ-treated mice receiving SCFAs had greater microbial diversity than mice treated with IMQ alone. SCFAs and anti-IL17 treatment were associated with alteration of gut microbiota, with increased prevalences of Oscillospiraceae and Lachnopiraceae and decreased prevalences of Muribaculaceae and Bacteroides, which have been predicted to be associated with increased glycan degradation, phenylalanine metabolism, and xylene degradation. SCFAs may mitigate IMQ-induced skin thickening and IL-17F levels and alter fecal microbiota profiles in IMQ-treated mice.
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Introduction
Psoriasis is a chronic inflammatory disease, with prevalences of 0.2% in Asia, 1.5–1.9% in Europe, and up to 3% in the United States1,2. It is a Th17-related inflammatory skin disease involving skin and joints that is characterized by widespread skin lesions with thick scales and arthritis that may cause significant physical and psychological burdens1. Psoriasis is associated with multiple comorbidities, including cardiovascular diseases, metabolic syndrome, depression, and inflammatory bowel diseases (IBD)3. It has been suggested that gut microbiota alterations are linked to psoriasis and its systemic comorbidities, severity, and response to biologic treatment4,5,6,7,8,9.
Psoriasis, psoriatic arthritis, IBD, and obesity have been linked to decreased levels of short-chain fatty acid (SCFA)-producing bacteria, such as Prevotella, Akkermansia, and Faecalibacterium10,11,12,13,14,15. As the end products of bacterial anaerobic fermentation of dietary fiber, SCFAs, especially propionate and butyrate, bear anti-inflammatory properties, inducing regulatory T cells in the colon and modulating the function of intestinal immune homeostasis16. Lower fecal or serum SCFA levels, which correspond to significant reductions in the abundance of SCFA-producing bacteria, have been observed in atopic dermatitis17,18, but are not as well characterized in psoriasis19. Lu et al. recently demonstrated that probiotics mitigate psoriasis-related inflammation. Effective strains of probiotics for alleviating pathologic skin changes and reducing skin inflammation significantly increased SCFA levels in a psoriasis-like mice model study20. The effects of SCFAs on psoriasis-related inflammation are worth further investigation.
In this study, the effects of SCFAs on skin and systemic inflammation and gut microbiome profiles were investigated using imiquimod (IMQ)-treated mice model. We implemented pipelines for phylogenetic analysis, functional gene analysis, and pathway analysis to investigate the associations among these profiles. The results were compared with the effects of anti-IL-17 antibodies on IMQ-treated mice model.
Materials and methods
Study design
The effects of SCFAs alone on experimental and control mice were first investigated in a pilot study (N = 3 for each group). We then conducted two-stage experiments. In the first stage, we compared the effects of SCFAs on an IMQ-induced psoriasis-like inflammation mouse model. Experimental mice were divided into four groups (N = 16): those given drinking water with SCFAs plus topical phosphate buffered saline (PBS) (n = 3), those given SCFAs plus IMQ (n = 5), those given ordinary drinking water without SCFAs plus topical PBS (n = 3), and those given ordinary drinking water without SCFAs plus topical IMQ (n = 5) (Supplementary Fig. S1A). In the second stage, the effects of anti-IL17 treatment on IMQ mice were compared in the presence and absence of SCFAs. Experimental mice were divided into eight groups (n = 40) depending on SCFA supplementation or anti-IL17 treatment. Non-SCFA supplementation groups included IMQ plus IgG-isotype (n = 5), IMQ plus anti-IL17 (n = 5), PBS plus anti-IL17 (n = 5), and PBS plus IgG-isotype (n = 5). SCFA groups included SCFAs with IMQ plus IgG-isotype (n = 5), SCFAs with IMQ plus anti-IL17 (n = 5), SCFAs with PBS plus anti-IL17 (n = 5), and SCFAs with PBS plus IgG-isotype (n = 6) (Supplementary Fig. S1B). To ensure consistent results, each experiment was replicate as needed. Comparisons among groups were performed for skin thickness, organ weights, inflammatory cytokine profiles, and fecal microbiota. Animal management and treatment protocols are described below.
Animal management
All experimental procedures were approved by the Institutional Animal Care and Utilization Committee (IACUC) of Taichung Veterans General Hospital (La-1091737) and performed in accordance with institutional guidelines. Male C57BL/6JNarl mice, aged four weeks, were obtained from the National Laboratory Animal Center (Taipei, Taiwan). They were initially housed in separate cages (3–5 mice per cage, L320*W215*H130mm, SHINETEH) with free access to water and food. The mice in the non-SCFA supplementation groups were provided with standard chow (5001, Laboratory Rodent Diet, USA) and the mice in the SCFA groups were provided with standard chow plus SCFA supplements (Sigma, Germany). Housing conditions included a constant temperature of 22 ± 1 °C and a regular 12-h light/dark cycle (lights on 8 PM to 8 AM, with Snai-chip #1511 bedding, Young Li). After three days of acclimatization, the 4-week-3-day-old mice received antibiotics for two days and standard chow (5001, Laboratory Rodent Diet) for 21 days or standard chow with SCFA supplements. The 7-week-5-day-old mice were reallocated to different groups in each arm in separate experiments.
Prior to experiments, the mice were randomly distributed among the groups to ensure a comparable average body weight in each group. Investigators were not blinded during the experiments and analyses.
IMQ treatment and administration
A daily topical dose of 80 mg of commercially available IMQ cream (5%) (Aldara; 3 M Health Care, Leicestershire, UK) was applied to the shaved back and right ear for seven consecutive days, translating into a daily dose of 4 mg of the active compound21. Control mice were treated similarly with a control topical PBS solution.
Antibiotics
To avoid background gut microbiota signals, Ciprofloxacin (0.2 g/L) (17,850, Sigma) and Metronidazole (1 g/L) (9,002,409, Cayman)22 were added to drinking water two days before SCFA-supplemented diet or standard chow diet.
SCFA supplement
To explore the effects of SCFAs on inflammation in IMQ-treated mice, experimental mice were provided with standard chow and drinking water supplemented with SCFAs (Sigma Aldrich, Germany) at a final concentration of 150 mM sodium propionate (P1880, Sigma) and 150 mM sodium butyrate (303,410 Sigma) for three weeks before and throughout IMQ treatment23,24. The control mice received standard chow and ordinary drinking water only.
Treatment with IL-17 antibody or isotype of anti-IL-17 antibody
Ultra-LEAF™ Purified anti-mouse anti-IL-17A Antibody (506,945, Biolegend), 100 µg/mouse, was given intraperitoneally every other day during the experimental period, with or without IMQ treatment. To avoid background non-specific signals from target antibodies25, we used IgG-isotype as a negative control. Control mice were injected with isotype (Ultra-LEAF™ Purified Rat IgG1, κ Isotype Ctrl Antibody, 400,431, Biolegend), 100 µg/mouse, every other day in addition to IMQ or PBS application.
Skin thickness, body weight, and tissue weight measurements
To avoid investigator bias, we measured the thicknesses of the right ear and back skin by digital caliper daily during the seven days of IMQ treatment. Skin samples from the ear and back, as well as samples of spleen, liver, and fat, were collected at the end of the experiment and fixed in 10% formaldehyde for H&E staining (Sigma, Germany, Leica Autostainer XL ST5010). Immunohistochemical staining was performed on skin and intestinal epithelia, for tight junction, anti-Claudin 3 antibody (AFFINITY, AF0129) and anti-Claudin 2 Antibody (ab53032, abcam). Each skin section was measured at three random spots and the average skin thickness was calculated. We calculated the thicknesses of the epidemis and dermis of the different treatment groups using Image J software. (National Institute of Health, NIH).
Serum cytokine measurements
Serum samples were collected after the experiments. The cytokine levels of mouse serum (20 × diluted) were measured on Multiplex cytokine bead array assay with MILLIPLEX MAP Mouse Cytokine/Chemokine Magnetic Bead Panel (MCYTMAG-70 KPX32; Millipore). All measurements were performed with a MAGPIX instrument (Luminex, Austin, TX), following the manufacturer’s instructions. Data were collected with xPonent software (Luminex). Mann–Whitney U test was used to calculate the significance levels between treatment groups. All results are expressed as mean ± SEM (Standard Error of the Mean). Moreover, p values less than 0.05 were considered significant.
Stool sample collection, DNA extraction, library construction, and metagenomic sequencing
Stool samples were collected and examined before and after IMQ (or PBS) treatment. Stool samples were obtained from each mouse after physical restraint, directly from the rectal aperture to avoid contamination. An Eppendorf tube pre-filled with Inhibitex Buffer, provided in the QIAamp Fast DNA Stool Mini Kit (Qiagen), was used to collect and stabilize the fecal specimen. The collection tube was carefully inserted into the rectal opening, ensuring minimal distress to the tissue. The sample was then secured in the tube, which was subsequently sealed and labeled with the appropriate identification details. Samples were stored at − 20 °C until DNA extraction was performed. The collected fecal sample (about 200 mg) was used for total bacterial DNA extraction with QIAamp Fast DNA Stool Mini Kit (Qiagen, MD, USA) according to the manufacturer’s instructions. The quality and quantity of DNA were determined with NanoDrop ND-1000 (Thermo Scientific, Wilmington, DE, USA) and DNA was stored at − 80 °C before library construction and sequencing.
Extracted DNA (about 500 ng) was fragmented to approximately 350 base pairs by Covaris S2 system (Covaris, Inc., Woburn, MA, USA) and then subjected to library construction with Illumina DNA Prep Kit (Illumina, San Diego, CA). Sequencing was performed using Illumina NovaSeq 6000 platform, resulting in paired-end (PE) reads of 150 bp in length.
Metagenomic raw read processing
On a per-sample basis, raw read quality control was performed using the Kneaddata pipeline (https://github.com/biobakery/kneaddata), which integrates Trimmomatic26 for trimming Illumina adaptors and low-quality regions and filtering short reads, as well as Bowtie227 for identifying and removing host contamination from human hg38 build (or mouse mm10 build) and PhiX genome. Trimmomatic options included “ILLUMINACLIP:NexteraPE-PE.fa:2:30:10” (identifying and removing adapters), “SLIDINGWINDOW:4:20” (trimming low quality region), and “MINLEN:50” (discarding reads shorter than 50 base pairs). After that, reads with low-complexity region and repeated sequences were identified and removed using Komplexity software (https://github.com/eclarke/komplexity) with default settings.
Metagenome assembly, annotation, and binning
Metagenome assembly was performed using MEGAHIT28 to assemble the clean reads into contigs. In terms of taxonomic identification, there were two approaches: (1) read-based taxonomy, which analyzes QC-passed reads using Sourmash29 to estimate relative abundance of taxa based on GTDB taxonomy30 and (2) contig-based taxonomy, which predicts taxonomy of contigs using MMSeqs231,32 easy-taxonomy pipeline and estimates abundance by contigs depth, derived by the jgi_summarize_bam_contig_depths script analyzing bowtie2 alignment that maps the clean reads onto contig.
Open reading frame (ORF) prediction and functional annotation [including the Clusters of Orthologous Groups (COGs) family and Enzyme Commission (EC) number assignment] was performed by subjecting contigs to Prokka33. ORFs were also analyzed to identify corresponding KEGG Orthology (KO) number, Carbohydrate Active enZyme (CAZy) family, antibiotics gene, and virulence factor using MMSeqs2 easy-search pipeline. MinPath34 was used for pathway reconstruction by analyzing KO (for KEGG pathway) and EC (for MetaCyc pathway)35 profiles of each sample. The abundance of gene families (or categories) was estimated by accumulating ORF depths, which were calculated by tpm_table python script (https://github.com/EnvGen/toolbox) based on the number of unique reads mapped on each ORF and presented in units of transcript per million (TPM)36.
Metagenomics binning was performed by MetaBAT37 to cluster contigs into genome “bins” [i.e., metagenome-assembled genomes (MAGs)]. The quality was assessed and taxonomically identified by CheckM lineage-specific workflow38. In addition, the classification of MAGs was based on a voting approach using the contig-based taxonomy of binned contigs, deepening the CheckM-predicted taxonomy in most cases.
Statistical analysis, bioinformatics analysis, and microbial gene function prediction
GraphPad Prism software 10 (GraphPad Software Inc., San Diego, CA, USA) was used to analyze experimental and clinical data. One-way analysis of variance was used for inter-group comparisons. P < 0.05 was considered statistically significant. Other statistical analyses were performed using R (http://www.r-project.org/), unless otherwise specified. The read- or contig-based taxonomic profiles were imported and handled by R package phyloseq39 and processed for alpha diversity estimation. Beta diversity was analyzed and visualized by principal coordinate analysis (PcoA) via the R package ade440 based on Bray–Curtis distance of species-level relative abundance profile. As for functional profiles, alpha diversity was represented by the number of observed entities. Beta diversity was also analyzed by PcoA based on Bray–Curtis distance of functional genes, families, or relative abundance profiles.
Between-group inertia percentages were tested based on the Monte-Carlo test (with 10,000 permutations) using Bray-Curtis41, with p values less than 0.05 considered significant. To identify organismal features differentiating communities of fecal microbiota between experimental and control mice, linear discriminant analysis (LDA) effect size (LefSe)42 was applied with α of 0.05 (Kruskal–Wallis and Wilcoxon tests) and effect size threshold of 2 on linear discriminant analysis (LDA) using the stand-alone implementation (https://bitbucket.org/nsegata/lefse).
The abundances of various gene families of experimental and control mice were scaled by total sum per sample and subjected to enrichment analysis of two-group comparison using several tests, including Wilcoxon signed rank test and ANOVA rank test or Kruskal–Wallis test with a Benjamin-Hochberg false discovery rate (FDR) correction to adjust p values for multiple testing.
The Bioinformatics analyses mentioned above were carried out by Germark Biotechnology Co., Ltd. (Taichung, Taiwan).
The experiments were carried out in accordance with the protocols and approval of the IACUC Taichung Veterans General Hospital, La-1091737.
Approval of animal study and animal welfare
The experiments were carried out in accordance with the protocols approved by the IACUC of Taichung Veterans General Hospital, La-1091737. The present study followed national guidelines of the 3Rs for humane animal treatment and complied with relevant legislation of the Ministry of Agriculture, Taiwan. The study is reported in accordance with ARRIVE guidelines.
Results
SCFAs and anti-IL-17 antibodies ameliorate IMQ-induced skin thickening
We first investigated the effects of SCFA supplements on psoriatic inflammation in IMQ-induced mice model. IMQ-induced inflammation mimics the key characteristics of psoriasis: scaling, erythema, epidermal acanthosis, and infiltration of inflammatory cells in the dermis. Next, we compared the beneficial effects of SCFA supplements to those of anti-IL17 antibodies, a standard treatment for psoriasis, on IMQ-induced inflammation. Mice were administered either SCFA supplements or drinking water for 3 weeks before IMQ exposure. On day 0, mice were subjected to topical IMQ alone or topical IMQ with concurrent administration of anti-IL-17 antibodies for seven days (Supplementary Fig. S1A,B). SCFAs significantly reduced skin thickness gain and skin erythema during the seven days of IMQ application (Fig. 1A,B, Supplementary Fig. S2A–D). H&E staining analysis of treated skin showed consistent results and reduction was most significant in the epidermis (Fig. 1C–E, supplementary Fig. S2E). The beneficial effects of SCFAs on IMQ-induced inflammation were comparable to those of anti-IL-17 treatment.
Evaluations of skin thickness and splenic weight alterations following IMQ application in mice, with interventions of SCFAs and anti-IL-17 antibodies. (A) SCFAs and (B) anti-IL-17 antibodies significantly decreased skin thickness gain in IMQ mice. Immunohistochemical analyses of (C) right ear and (D) back skin samples from different treatment groups demonstrated consistent results. (E) The skin thickness changes in epidermis of back were calculated using Image J software. (F) Increase in splenic weight in IMQ-treated mice relative to controls with significant reduction following SCFA and anti-IL17 treatments in IMQ-treated mice. IMQ imiquimod, SCFAs short-chain fatty acids. *The analyses of skin thickness and splenic weight alterations were based on experiments that were performed in triplicate.
SCFAs and anti-IL-17 antibodies ameliorate splenic weight gain and serum IL-17 levels in IMQ-treated mice
Next, we investigated the effects of SCFAs on splenic weight and systemic pro-inflammatory cytokines. IMQ significantly increased splenic weight compared to controls. SCFAs markedly reduced splenic weight gain following IMQ treatment (Fig. 1F, supplementary Fig. S2F–G). There was little change in other organ weights, such as of liver and fat, among the treatment groups (Supplementary Fig. S2G–I).
Serum samples were collected at the end of the experiments. IMQ significantly increased serum IL-17F levels compared to controls. Both SCFAs and anti-IL-17 antibodies significantly reduced IL-17F levels induced by IMQ. (Fig. 2A). The serum levels of IL-17A were reduced in mice receiving SCFAs or anti-IL-17 antibodies, but without statistical significance (Fig. 2B). There were no changes in TNF-α, IL-22, IL-23, or IL-31 after SCFA or anti-IL-17 treatment (data not presented).
SCFAs and anti-IL-17 antibodies were associated with gut microbial alteration in IMQ-treated mice
Finally, we investigated the functional aspects of the gut microbiome profiles affected by SCFAs. We performed metagenomic sequencing via the following procedures: de novo assembly, prediction of ORFs, clustering and annotation of ORFs, and read mapping to assembled contigs. Based on the results of taxon analysis, we compared the gut microbial profiles among IMQ mice receiving SCFAs, anti-IL-17 antibodies, or isotype control using gene set enrichment analysis.
There were notable differences in fecal microbiota richness, diversity, and distribution between mice treated with SCFAs or anti-IL-17 antibodies and those not treated with SCFAs or anti-IL-17 antibodies following IMQ exposure. In IMQ-isotype mice, SCFAs and anti-IL-17 antibodies were significantly associated with enhanced richness and diversity of fecal microbiota. (Fig. 3A,B), as well as differing fecal microbial compositions (Fig. 3C,D).
SCFA supplements and IL-17 antagonists enhanced the richness and diversity of fecal microbiota. We compared the α-diversities of fecal microbiota between (A) IMQ mice receiving isotype injections plus SCFA supplements and not receiving SCFA supplements and (B) IMQ mice receiving anti-IL17 or IgG isotype treatment. There were significant differences in the β-diversity of fecal microbiota between IMQ mice receiving (C) IgG isotypes with or without SCFA supplements, but not between (D) IMQ mice with anti-IL17 and IMQ mice with IgG isotype treatment. Between-group inertia percentages were tested using the Monte-Carlo test (with 10,000 permutations) with Bray–Curtis method. p values less than 0.05 were considered significant. The organismal features differentiating communities of fecal microbiota between experimental and control mice were presented by LEfSe, applied with α of 0.05 (Kruskal–Wallis and Wilcoxon tests), as described in the “Methods” section.
The relative abundances of fecal microbiota in different treatment groups are presented in Table 1. Alterations in gut microbiota profiles following SCFA supplementation in IMQ- and IMQ-isotype mice are presented in Fig. 4A,B. The most discriminating OTUs between anti-IL-17 antibody-treated and isotype-treated IMQ mice are presented in Fig. 4C. Increased relative abundances of Oscillospiraceae and Lachnospiraceae families were found in mice receiving anti-IL-17 antibodies or SCFAs. On the contrary, increased relative abundances of Mauribaulaceae and Bacteroidaceae were found in mice treated with IMQ plus IgG-isotype alone (Table 1).
The discriminating microbial species and discriminating metabolic pathways of IMQ mice receiving: (A) SCFAs, (B) anti-IL17, or (C) combination SCFAs and anti-IL17 treatment. The discriminating metabolic pathways in IMQ mice enhanced by (D) SCFA supplements or (E) anti-IL17 treatment and (F) the top 20 discriminating genes after SCFAs. The abundances of various gene families between experiments were scaled by total sum per sample and subjected to enrichment analysis of two-group comparison using several tests, including Wilcoxon signed rank test, ANOVA rank test, or Kruskal–Wallis test with a Benjamin-Hochberg false discovery rate (FDR) correction to adjust p values for multiple testing.
Metabolic and signaling pathways of the gut microbiome associated with SCFAs and anti-IL-17 antibodies
The fecal microbial profiles of SCFA-supplemented IMQ-isotype mice were associated with enhanced glycan degradation, phenylalanine metabolism, and xylene degradation (Fig. 4D). On the contrary, the fecal microbial profiles of IMQ-treated mice were associated with enhanced expression of pathways involving carbohydrate metabolism (Fig. 4E). Fecal specimens from IMQ-isotype mice receiving IL-17 antibodies demonstrated enhanced expression of ABC transporter ATP-binding protein (Fig. 4F).
Discussion
The results of this study demonstrated that SCFAs are associated with decreased skin thickness and splenic weight gain, as well as reduced expression of IL-17 in IMQ-treated mice. These changes in skin manifestations and inflammatory cytokines resembled the effects of anti-IL-17 antibody treatment. SCFAs were also associated with alterations in gut microbiota, notably increased relative abundances of the Oscillospiraceae and Lachnospiraceae families. Distinct fecal microbiota have been predicted to be linked to enhanced glycan degradation, phenylalanine metabolism, and xylene degradation based on genetic enrichment analyses.
SCFAs are primarily produced through anaerobic fermentation by intestinal microbes. The production of SCFAs in the intestinal tract is influenced by factors such as diet, microorganism populations, and the duration of their residence in the intestine43. The anti-inflammatory effect of SCFAs has been reported to be mediated by alleviation of the TNF-α-related TLR4/MyD88/ NF-kB pathway44, which may be involved in the pathogenesis of atherosclerosis45. A defect in the function and a reduced number of regulatory T cells have been found in psoriasis. Topical sodium butyrate treatment of psoriatic skin lesions restores the reduced Treg cell number and normalizes the enhanced expression of IL-17A46. The results of this study further demonstrated that sodium propionate and sodium butyrate supplements ameliorate IMQ-induced skin and systemic inflammation with decreased IL-17 and TNF-α levels and altered fecal microbiota.
Altered gut microbiota have been proposed to be linked to psoriasis pathogenesis5,6,7. The impact of SCFAs on fecal microbiota profiles may provide further insight into the underlying mechanism of this association. Previous research has consistently shown that patients with psoriasis and psoriatic arthritis possess unique gut microbial profiles similar to those observed in IBD patients6,7. In our previous studies, we found that psoriasis patients exhibit a distinct fecal microbial signature, which may be linked to carbohydrate transport and chemotaxis, suggesting a connection between metabolic and gastrointestinal comorbidities in psoriasis6,7.
A reduction in butyrate-producing microorganisms has been reported in several diseases, including irritable bowel syndrome (IBS) and psoriasis47,48,49 Psoriatic patients have been shown to have decreased relative abundances of protective taxa that may produce butyrate in the gut, such as Parabacteroides and Coprobacillus, Prevotella and Ruminococcus, Akkermansia muciniphila, and Faecalibacterium prausnitzii9,10,11,12,13,14, contributing to defects in Treg cells. Furthermore, gut microbial genes encoding the enzymes involved in butyrate synthesis, butyrate kinase, and phosphate butyryl transferase are less abundant in psoriatic patients50,51. These observations support the beneficial role of SCFAs in psoriasis management.
In the present study, we found increased abundances of Oscillospiraceae and Lachnospiraceae in IMQ-mice receiving anti-IL-17 antibodies and SCFAs. Oscillospiraceae butyrate-producing bacteria have anti-inflammatory effects52. Several studies have reported that Oscillospiraceae is strongly associated with leanness or lower BMI in children and adults. Although controversial, in animal studies Oscillospiraceae has been shown to be negatively associated with obesity, type 2 diabetes mellitus (DM), metabolic syndrome, Parkinson’s disease, and ulcerative colitis52,53.
Lachnospiraceae, which are also butyrate-producing bacteria, have been negatively associated with human genetic variants rs11751024 that have been linked to several clinical traits including psoriasis, type 1 DM, and cardiovascular diseases54. One recent mouse study demonstrated that sleep deprivation causes dysregulation of serum inflammatory profiles, in which IL-1β is positively correlated with the abundance of Muribaculaceae and negatively correlated with the abundance of Lachnospiraceae55. We postulated that the increased abundances of Lachnospiraceae and Ocilliospiraeceae in SCFA-treated mice correlate well with improvements in inflammatory profiles, such as IL-17.
Based on the alterations in fecal microbiota profiles, a number of metabolic pathways of SCFA supplementation and anti-IL17 treatment have been identified on genetic enrichment analyses, including glycan degradation and amino acid metabolism, such as phenylalanine metabolism. Glycan degradation plays a critical role in maintaining intestinal integrity. Deficiencies in enzymes may be involved in gut dysbiosis56, resulting in conditions such as IBD and IBS56. The beneficial effects of SCFAs in psoriasis might be linked to restored intestinal barrier integrity. Phenylalanine, found in protein-rich foods like milk, eggs, and meat, impairs insulin signaling and inhibits glucose uptake in type 2 diabetes mice model57. Phenylalanine is also a precursor for several proteins and neurotransmitters, such as tyrosine, dopamine, norepinephrine, and epinephrine58. The dysregulation of these neurotransmitters has been reported to be involved in depression59 and schizophrenia60. However, these results were based on mice genetic enrichment analyses only. Whether or not there is an association with human psoriasis requires further study.
The alterations in fecal microbiota may not solely be attributed to SCFAs but, rather, multiple factors. Age, sex, host genetic background, infection, use of antibiotics, probiotics or prebiotics, dietary patterns, and environment, such as cage factors, all affect the composition of fecal microbiota. Due to lack of germ-free laboratory conditions, we utilized short-term antibiotics21 to prevent background microbiota signals before experiments. We ensured uniformity among the study mice by selecting mice of the same age, sex, and species. Additionally, mice in the same experimental group were housed in a single cage, where they were provided with identical bedding materials throughout the experiment. This standardization minimized variability and controlled for environmental factors. We aimed to avoid all background biases in interpreting our experimental results. We also analyzed the stool samples before and after various treatments. Although there were some differences in fecal microbial diversity and richness before various treatments (Supplementary Fig. S3), they did not affect the trends that emerged at the end of the experiments.
SCFAs are important for maintaining intestinal epithelial homeostasis and integrity61. However, we did not find significant losses of epithelial tight junction expression, Claudin-3 or Claudin-2 (representing disturbance of epithelial barrier integrity), with IMQ alone in either skin or intestine (Supplementary Fig. S4A–C). SCFA-associated improvements in IMQ-induced epithelial integrity disturbances may not have been adequately assessed in the current study. However, the results were consistent with prior studies. IMQ alone may not cause intestinal inflammation but can aggravate the severity of dextran sodium sulfate (DSS)-induced colitis5,62. These studies have suggested a two-hit hypothesis for colitis development in IMQ-mice: psoriasis-induced altered gut homeostasis and a secondary environmental challenge. Further experiments using the DSS-colitis model may be helpful. The role of gut microbiota alterations in the beneficial effects of SCFAs on psoriasis-like inflammation remains to be explored. Based on the results of the current study, we propose a schematic mechanism of SCFA effects on psoriasis-like inflammation (Fig. 5).
The proposed schematic figure of the mechanisms of SCFA on IMQ-treated mice. IMQ significantly induces skin erythema and hyperplasia via enhanced expression of circulating IL-17 and fecal microbiota alterations. SCFAs may reduce the circulating IL-17F and TNF-alpha, alter the fecal microbiota profiles, and increase the prevalences of Oscillospiraceae and Lachnospiraceae. IMQ imiquimoid, SCFA short-chain fatty acids.
There are several limitations to the present study. First, our results may only refer to acute skin inflammation in IMQ mice model. This study was conducted using a limited number of mice. The cage factor issue is difficult to exclude. Therefore, the results may not be generalizable to other species or experimental designs and need further validation. Lack of blinding was a concern in collecting clinical data in the present study. To avoid investigator bias, we measured skin thickness in different treatment groups with a digital caliper. Each skin section was measured at three random spots, and the average skin thickness was calculated. In addition, we did not measure the fecal or circulatory metabolite levels in mice. The association of metabolic pathways involving psoriasis-like mice based on gene enrichment analysis may need further investigation.
Nevertheless, the results of this study provide valuable insights into the effects of SCFAs on skin thickness, circulatory IL-17 levels, and fecal microbiota profiles.
In conclusion, SCFAs are associated with anti-inflammatory effects on cutaneous and systemic inflammation in IMQ-treated mice. These effects may be linked to alterations in gut microbiota.
Data availability
Raw sequencing data files of experimental samples have been deposited in NCBI affiliated with BioProject PRJNA1010388.
Abbreviations
- CAZY:
-
Carbohydrate active enzyme
- COG:
-
Clusters of orthologous groups
- EC:
-
Enzyme commission
- FDR:
-
False discovery rate
- FMT:
-
Fecal microbial transplantation
- IBD:
-
Inflammatory bowel disease
- IBS:
-
Irritable bowel syndrome
- KO:
-
KEGG orthology
- LDA:
-
Linear discriminant analysis
- LefSe:
-
Linear discriminant analysis effect size
- IMQ:
-
Imiquimod
- MAG:
-
Metagenome-assembled genome
- ORF:
-
Open reading frame
- OTU:
-
Operational taxonomic units
- PCoA:
-
Principal coordinate analysis
- PsA:
-
Psoriatic arthritis
- RA:
-
Rheumatoid arthritis
- SCFAs:
-
Short-chain fatty acids
- SLE:
-
Systemic lupus erythematosus
- TPM:
-
Transcript per million
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Acknowledgements
We would like to thank Germark Biotechnology, Co., Ltd. Taiwan for providing microbiota analyses. This study was supported by the National Science Technology Council, Taiwan (NSTC 108-2314-B-075A-008 and 110-2314-B-075A-008) and Taichung Veterans General Hospital (TCVGH- 1106801C, 1116801C, and 1116802C).
Funding
This work was supported by grants NSTC 108-2314-B-075A-008 and 110-2314-B-075A-008 and TCVGH- 1106801C, 1116801C, and 1116802C.
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YC, CW, and HJH had full access to all of the data in the study and took responsibility for the integrity of the data and the accuracy of the data analysis. YC and CW conceived of and designed the study. YC, CT, and CW completed the first draft of the manuscript. YFC, ST, and JS supervised and conducted the animal experiments. YFC, ST, HJH, and CT performed the statistical analysis. All authors participated in the acquisition, analysis, and interpretation of data. All authors have read and approved the manuscript.
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Chen, YJ., Ho, H.J., Tseng, CH. et al. Short-chain fatty acids ameliorate imiquimod-induced skin thickening and IL-17 levels and alter gut microbiota in mice: a metagenomic association analysis. Sci Rep 14, 17495 (2024). https://doi.org/10.1038/s41598-024-67325-x
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DOI: https://doi.org/10.1038/s41598-024-67325-x