How yeast telomeres avoid triggering DNA damage checkpoints is studied by creating de novo telomere ends with different amounts of telomeric repeats. Rif1 and Rif2 protect short telomere tracts through different mechanisms and by blocking the accumulation of proteins that can activate checkpoint kinase Mec1. Moreover, long telomere tracts can perturb DNA end processing on neighboring short tracts and hence dampen checkpoint activation.