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Showing 151–200 of 9188 results
Advanced filters: Author: P Yang Clear advanced filters
  • Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

    • Marta Paczkowska
    • Jonathan Barenboim
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Guided bone regeneration (GBR) membranes are used to treat bone defects, but face challenges in regulating the immune microenvironment. Here, Yang et al. report a Janus collagen-based barrier membrane that modulates the osteoimmune microenvironment to effectively promote bone regeneration.

    • Die Yang
    • Zhilang Xu
    • Defu Li
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Zhang, Chen, and colleagues present Thor, a platform that turns spot-level spatial transcriptomics into single-cell gene maps using the paired histology image, without using single-cell RNA-seq data. Thor unveils fine tissue architectures, and it expands our knowledge on fibrosis and vascular-regenerative gene expression.

    • Pengzhi Zhang
    • Weiqing Chen
    • Guangyu Wang
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-22
  • Continuous shape morphing for small robots can offer advantages, but it is difficult to perform tasks if they are not stiff enough. Xu et al. present here a design combining liquid crystal elastomers and shape memory polymers to lock morphable elements in place.

    • Shiwei Xu
    • Xiaonan Hu
    • Yihui Zhang
    Research
    Nature Machine Intelligence
    Volume: 7, P: 703-715
  • The synthesis of alkenes from carboxylic acids, alcohols and alkanes is a formidable challenge owing to their inherent differences in reactivity. Now the one-pot conversion of these building blocks into alkenes is reported through an integrated photochemical strategy using a phenyl vinyl ketone as the olefination reagent.

    • Hao Zeng
    • Ruize Yin
    • Jie Wu
    Research
    Nature Chemistry
    Volume: 16, P: 1822-1830
  • The development of subunit vaccines mimicking the molecular complexity of attenuated vaccines has been limited by the difficulty in co-delivery of multiple chemically diverse payloads. Here, the authors report hierarchical hydrogels, assembled from a single homopolymer via a multi-stage process, that enable ratiometric loading of a protein antigen and four physicochemically distinct adjuvants.

    • Fanfan Du
    • Simseok A. Yuk
    • Evan A. Scott
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • Genome-wide association studies (GWAS) have improved our understanding of the genetic basis of lung adenocarcinoma but known susceptibility variants explain only a small fraction of the familial risk. Here, the authors perform a two-stage GWAS and report 12 novel genetic loci associated with lung adenocarcinoma in East Asians.

    • Jianxin Shi
    • Kouya Shiraishi
    • Qing Lan
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-17
  • Single-cell data analysis is challenging due to inherent noise and sparsity. Here, authors introduce scMINER, a mutual information-based integrative tool to enhance clustering and reveal regulatory networks and hidden biological drivers by transforming scRNA-seq expression into activity profiles.

    • Qingfei Pan
    • Liang Ding
    • Jiyang Yu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • 3D moiré lattices can exhibit distinct incommensurate phases depending on twist angles. Here, authors demonstrate phase-controlled emergence of fully localized, line-localized, and plane-localized states, enabling tunable 3D transport in cold atom and optical systems.

    • Zixuan Gao
    • Vladimir V. Konotop
    • Fangwei Ye
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • Innate lymphoid cells (ILC) are an important modulator of immunity in many tissues, including lymphoid tissues, but their spatial information is still scarce. Here, the authors use multiplexed and multispectral imaging methods to provide a spatial map of ILCs in human thymus, spleen, lymph nodes, intestinal lymphoid tissue, and lymphoma, and observe ILC/T helper cells colocalization.

    • Nathalie Van Acker
    • François-Xavier Frenois
    • Pierre Brousset
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-27
  • Rising CO₂ and warming enhance vegetation greening, but drought, heat stress, and resource limits constrain this trend. Here, the authors show that within a year, increased early- and peak- season greenness often leads to late-season declines, highlighting water/heat stress limits on greening and the carbon sink.

    • Wen Zhang
    • William K. Smith
    • David J. P. Moore
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

    • Moritz Gerstung
    • Clemency Jolly
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 122-128
  • Radiopharmaceuticals engineered with click chemistry to selectively bind to tumour-specific proteins can be used to successfully target tumour cells, boosting the pharmacokinetics of radionuclide therapy and improving tumour regression.

    • Xi-Yang Cui
    • Zhu Li
    • Zhibo Liu
    Research
    Nature
    Volume: 630, P: 206-213
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330
  • The ability to encode and recall information about food is critical for survival. We reveal that ventral hippocampus projections to the lateral hypothalamus encode meal-related memories, and that disruption of this circuit promotes excessive eating.

    • Léa Décarie-Spain
    • Cindy Gu
    • Scott E. Kanoski
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • The absence of catalytic asymmetric methods for synthesizing chiral (hetero)bicyclo[n.1.1]alkanes has hindered their application in new drug discovery. Herein the authors report an enantioselective formal (3 + 3) cycloaddition of bicyclobutanes with nitrones using a chiral Lewis acid catalyst for the synthesis of hetero-bicyclo[3.1.1]heptane.

    • Wen-Biao Wu
    • Bing Xu
    • Jian-Jun Feng
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-9
  • Electromagnetically induced transparency—an effect in atomic physics caused by interference between transitions—has found analogues in other areas, like nanophotonics. Yang et al. exploit this effect in an all-dielectric metasurface to produce high-Q-factor resonances ideal for refractive index sensing.

    • Yuanmu Yang
    • Ivan I. Kravchenko
    • Jason Valentine
    Research
    Nature Communications
    Volume: 5, P: 1-7
  • This study has identified new regulators, such as RHD6 and GL2, involved in the regulation of the RAE1-STOP1-ALMT1 module, contributing to Al resistance. It has also established a complex transcriptional network that controls STOP1-dependent ALMT1 expression, offering new insights into Al resistance and signaling.

    • Hongrui Cao
    • Meng Zhang
    • Zhong-Bao Yang
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-16
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • Experimental systems in which non-trivial topology is driven by spontaneous symmetry breaking are rare. Now, topological gaps resulting from two excitonic condensates have been demonstrated in a three-dimensional material.

    • Md Shafayat Hossain
    • Zi-Jia Cheng
    • M. Zahid Hasan
    Research
    Nature Physics
    Volume: 21, P: 1250-1259
  • Despite several decades of research that has revealed roles in the development and progression of many solid tumours, clinical translation of research targeting epithelial–mesenchymal transition (EMT) has thus far been limited. In this Review, the authors provide a summary of the role of EMT in cancer development and progression in the context of this lack of clinical translation, summarize the current status of direct or indirect EMT-modulating agents in clinical development, and highlight the major barriers to the development of EMT-related clinical interventions.

    • Erik W. Thompson
    • Andrew D. Redfern
    • Thomas Brabletz
    Reviews
    Nature Reviews Clinical Oncology
    Volume: 22, P: 711-733
  • Schizophrenia exhibits significant variability in brain structures, traditionally viewed as static due to heterogeneous subgroups. Here the authors use magnetic resonance imaging data from 1,792 individuals with schizophrenia to reveal that gray matter volume variability is greater in early stages and decreases over time, highlighting dynamic brain alterations with implications for understanding disease progression.

    • Yuchao Jiang
    • Lena Palaniyappan
    • Jianfeng Feng
    Research
    Nature Mental Health
    Volume: 3, P: 803-813
  • The realization of high-performance flexible perovskite/crystalline-silicon tandem solar cells requires efficient photocarrier transport and mitigation of residual stress. Here, authors reveal the critical role of perovskite phase homogeneity, achieving flexible devices with efficiency of 29.88%.

    • Yinqing Sun
    • Faming Li
    • Mingzhen Liu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • Personalized antibacterial agents against diverse bacteria strains are promising for combating antimicrobial resistance, but a balance between strain specificity and broad-spectrum bactericidal activity is elusive. Here, the authors report an antibacterial nanoagent TiOx@C with bacterial cell wall specificity, multi-targeting and bactericidal effect against S. aureus and P. aeruginosa.

    • Yanling You
    • Xu Yu
    • Jianlin Shi
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • NIPBL perturbation activates long terminal repeat (LTR)-derived alternative promoters due to reorganization of chromatin’s hierarchical structure, leading to LTR co-option and oncogene activation in melanoma cell lines.

    • Elissa W. P. Wong
    • Merve Sahin
    • Ping Chi
    ResearchOpen Access
    Nature Genetics
    Volume: 57, P: 1754-1765
  • A large genome-wide association study of more than 5 million individuals reveals that 12,111 single-nucleotide polymorphisms account for nearly all the heritability of height attributable to common genetic variants.

    • Loïc Yengo
    • Sailaja Vedantam
    • Joel N. Hirschhorn
    ResearchOpen Access
    Nature
    Volume: 610, P: 704-712