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Showing 1–50 of 99 results
Advanced filters: Author: Xuemei Ni Clear advanced filters
  • Alternating-current electroluminescent fibres hold promise as light sources for smart textiles and soft machines, yet they suffer from low durability and stability. Here, the authors report a bright, durable electroluminescent fibre that recovers from severing damage and remains stable for months, with omnidirectional magnetic actuation.

    • Xuemei Fu
    • Guanxiang Wan
    • Benjamin C. K. Tee
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-10
  • Protonic ceramic electrochemical cells (PCECs) interconvert hydrogen and electricity and therefore have potential as long-duration energy storage systems, but the durability of these devices under industrially relevant conditions is limited. Here the authors report a PCEC that maintains low degradation rates throughout exceptionally long-term durability tests.

    • Hanchen Tian
    • Wei Li
    • Xingbo Liu
    Research
    Nature Energy
    Volume: 10, P: 890-903
  • This study applied a high-throughput sequencing approach to analyse Arabidopsis DCL1 cleavage. DCL1 cleavage preferences are governed by the GHR motif, which is conserved across plant species and has a role in the biogenesis of non-canonical 22-nucleotide microRNAs.

    • Thi Nhu-Y Le
    • Trung Duc Nguyen
    • Tuan Anh Nguyen
    Research
    Nature Plants
    Volume: 11, P: 1528-1543
  • Common photovoltaic effect is across the interface of heterojunctions. Here, the authors find that scanning a light beam can induce a persistent in-plane photoelectric voltage along silicon-water interfaces, due to the following movement of a charge packet in the vicinity of the silicon surface.

    • Jidong Li
    • Yuyang Long
    • Jun Yin
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-6
  • Here, the authors investigate naphthalimide-based compounds with cold triplet excitons utilized by triplet-triplet annihilation-mediated high-lying reverse intersystem crossing, and realize rate constant of over 109 s−1 with exciton utilization efficiency of 46.7% in organic light-emitting diodes.

    • Yanju Luo
    • Kai Zhang
    • Zhiyun Lu
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-12
  • Adipocyte tissue macrophages (ATM) are recruited and activated in obesity. The authors show that adipocytes release lactate as a signal of inflammation and that this metabolite can enhance obesity associated inflammation through stimulation of ATM by direct binding with PHD2.

    • Tianshi Feng
    • Xuemei Zhao
    • Xiaoyan Hui
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-14
  • Here the authors determine multiple conformational structures of T4 and T6 bacteriophage topoisomerase IIs when breaking G-segment DNA, identifying a unique insertion in the TOPRIM domain of the T4 topoisomerase II, and a difference in the catalytic centers of the dimers.

    • Yuhui Xin
    • Runqi Xian
    • Yutao Chen
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • The occupied anti-bonding states at the Fermi level in metavalently bonded systems stems from the interplay between metavalent bonds and the phase of orbitals. This provides a recipe for identifying superior dopants to improve the thermoelectric performance of metavalently bonded materials.

    • Guodong Tang
    • Yuqi Liu
    • Matthias Wuttig
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • The zygote’s genome is a combination of both the maternal and paternal genomes. Researchers previously found that the maternal and paternal genomes contribute equally to the transcriptome of early plant embryos. However, now Zhao et al. show a strong single parental effect on the development of the basal cell lineage of early proembryos in Arabidopsis.

    • Peng Zhao
    • Xuemei Zhou
    • Meng-xiang Sun
    Research
    Nature Plants
    Volume: 6, P: 1354-1364
  • African swine fever virus is the sole mammalian-infecting virus encoding a type II topoisomerases (pP1192R). The authors present pP1192R structures in different states, illustrating the enzymatic mechanisms of viral type II topoisomerases.

    • Jingyuan Cong
    • Yuhui Xin
    • Yutao Chen
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • A new seahorse genome and the re-sequenced genomes of 21 other species shed new light on the evolutionary origin and global dispersal routes of seahorses, and show that bony spines—a key adaptation against predation—probably evolved multiple times via independent substitutions in the bmp3 gene.

    • Chunyan Li
    • Melisa Olave
    • Qiang Lin
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-11
  • This study shows a self-powered deep-sea current measurement system using a triboelectric nanogenerator (TENG) that measures currents from 0.02 to 6.69 m/s and withstands over 45 MPa pressure. Successful operation at 4531 m depth in the South China Sea is demonstrated.

    • Yuan Chao Pan
    • Zhuhang Dai
    • Yang Yang
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-10
  • Hydroxyl-carboxylic acid receptor 2 (HCA2) functions as a high-affinity receptor for nicotinic acid (vitamin B3). Here, authors report the cryo-EM structure of the HCA2-Gi complex with the agonist MK-6892 and inactive state crystal structures of mutation stabilized HCA2, to describe the mechanism of HCA2 signaling.

    • Yang Yang
    • Hye Jin Kang
    • Zhi-Jie Liu
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-11
  • Pollen grains undergo desiccation and rehydration prior to germination and must survive osmotic shock. Here the authors show that the Qc-SNARE protein SYP72 is required for the localization of the mechanosensitive channel MSL8 at the plasma membrane and to maintain viability during rehydration.

    • Xuemei Zhou
    • Yifan Zheng
    • Peng Zhao
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-14
  • Some cancer patients first present with metastases where the location of the primary is unidentified; these are difficult to treat. In this study, using machine learning, the authors develop a method to determine the tissue of origin of a cancer based on whole sequencing data.

    • Wei Jiao
    • Gurnit Atwal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Junin virus (JUNV) causes Argentine hemorrhagic fever and encodes the large protein (L) of the RNA dependent RNA polymerase (RdRp) and its regulator, the matrix zinc-binding protein (Z). Here, the authors present the 3.54 Å cryo-EM structure of the complex of JUNV L with Z, and they propose a model of how JUNV L is regulated by Z during the viral life cycle and RNA synthesis.

    • Huiling Kang
    • Jingyuan Cong
    • Zihe Rao
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-10
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

    • Moritz Gerstung
    • Clemency Jolly
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 122-128
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

    • Marta Paczkowska
    • Jonathan Barenboim
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • The anti-viral protein MAVS forms aggregates as part of the antiviral response and promoting type I IFN responses. Here the authors show that protein arginine methyltransferase 9 (PRMT9) methylates MAVS to keep the protein in a non-aggregated state and propose a regulatory mechanism for MAVS.

    • Xuemei Bai
    • Chao Sui
    • Chengjiang Gao
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-16
  • In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

    • Yiqun Zhang
    • Fengju Chen
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

    • Yulia Rubanova
    • Ruian Shi
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Embryo development is a critical stage and is influenced by hormones. Here, it is shown that gibberellins promote embryonic axis elongation through an interaction between DELLA proteins and transcription factor LEC1, which induces auxin biosynthesis.

    • Yilong Hu
    • Limeng Zhou
    • Xingliang Hou
    Research
    Nature Plants
    Volume: 4, P: 289-298