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A universal foundation model for grounded biomedical image interpretation
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  • Published: 04 June 2026

A universal foundation model for grounded biomedical image interpretation

  • Linshan Wu  ORCID: orcid.org/0000-0002-0486-184X1,
  • Yuxiang Nie  ORCID: orcid.org/0009-0001-4197-10791,
  • Sunan He1,
  • Jiaxin Zhuang1,
  • Luyang Luo  ORCID: orcid.org/0000-0002-7485-41511,2,
  • Tao Li3,
  • Zhuoyao Xie3,
  • Dexuan Chen3,
  • Yinghua Zhao3,
  • Neeraj Mahboobani  ORCID: orcid.org/0000-0002-4395-327X4,
  • Varut Vardhanabhuti  ORCID: orcid.org/0000-0001-6677-31945,
  • Ronald Cheong Kin Chan6,7,
  • Yifan Peng  ORCID: orcid.org/0000-0001-9309-83318,
  • Pranav Rajpurkar2 &
  • …
  • Hao Chen  ORCID: orcid.org/0000-0002-8400-37801,9,10,11,12 

Nature Communications (2026) Cite this article

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We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Data integration
  • Health care
  • Image processing
  • Machine learning

Abstract

The integration of AI-assisted biomedical image analysis into clinical practice demands AI-generated findings that are not only accurate but also interpretable. However, existing models generally lack the ability to simultaneously generate diagnostic findings and localize corresponding targets. This limitation makes it challenging to correlate AI-generated findings with visual evidence and interpret the results. To this end, we introduce UniBiomed, a universal foundation model for grounded biomedical image interpretation, which is capable of generating accurate diagnostic findings and segmenting the biomedical targets. UniBiomed is based on an integration of Multi-modal Large Language Model and Segment Anything Model, which can unify diverse biomedical tasks in universal training for advancing grounded interpretation. To develop UniBiomed, we curate a large-scale dataset comprising 27 million triplets of images, region annotations, and text descriptions. Extensive validation on 70 internal and 14 external datasets demonstrated the state-of-the-art performance of UniBiomed in diverse biomedical tasks.

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Acknowledgements

We thank the support of HKUST SuperPOD for providing the GPU platform for model training. Icons of Figs. 1 (a, c, d), 5 (a, b), 6, and Supplementary Figs. A5 (b), A8, A9 (a, b) are made by Freepik from www.flaticon.com.

This project has been reviewed and approved by the Human and Artefacts Research Ethics Committee (HAREC). The protocol number is HREP-2025-0188.

Funding

This work was supported by the Hong Kong Innovation and Technology Commission (Project No. MHP/002/22, GHP/006/22GD and ITCPD/17-9), HKUST (Project No. FS111), and the Research Grants Council of the Hong Kong Special Administrative Region, China (Project Reference Number: T45-401/22-N).

Author information

Authors and Affiliations

  1. Department of Computer Science and Engineering, The Hong Kong University of Science and Technology, Hong Kong, China

    Linshan Wu, Yuxiang Nie, Sunan He, Jiaxin Zhuang, Luyang Luo & Hao Chen

  2. Department of Biomedical Informatics, Harvard University, Boston, MA, USA

    Luyang Luo & Pranav Rajpurkar

  3. Department of Radiology, The Third Affiliated Hospital of Southern Medical University, Guangzhou, China

    Tao Li, Zhuoyao Xie, Dexuan Chen & Yinghua Zhao

  4. Department of Imaging and Interventional Radiology, The Chinese University of Hong Kong, Hong Kong, China

    Neeraj Mahboobani

  5. Department of Diagnostic Radiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China

    Varut Vardhanabhuti

  6. Department of Anatomical and Cellular Pathology, The Chinese University of Hong Kong, Hong Kong, China

    Ronald Cheong Kin Chan

  7. State Key Laboratory of Translational Oncology, The Chinese University of Hong Kong, Hong Kong, China

    Ronald Cheong Kin Chan

  8. Population Health Sciences, Weill Cornell Medicine, New York, NY, USA

    Yifan Peng

  9. Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology, Hong Kong, China

    Hao Chen

  10. Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong, China

    Hao Chen

  11. State Key Laboratory of Molecular Neuroscience, The Hong Kong University of Science and Technology, Hong Kong, China

    Hao Chen

  12. Shenzhen-Hong Kong Collaborative Innovation Research Institute, The Hong Kong University of Science and Technology, Shenzhen, China

    Hao Chen

Authors
  1. Linshan Wu
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  2. Yuxiang Nie
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  3. Sunan He
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  4. Jiaxin Zhuang
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  5. Luyang Luo
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  6. Tao Li
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  7. Zhuoyao Xie
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  8. Dexuan Chen
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  9. Yinghua Zhao
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  10. Neeraj Mahboobani
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  11. Varut Vardhanabhuti
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  12. Ronald Cheong Kin Chan
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  13. Yifan Peng
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  14. Pranav Rajpurkar
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  15. Hao Chen
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Corresponding author

Correspondence to Hao Chen.

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Competing interests

The authors declare no competing interests.

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Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

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Cite this article

Wu, L., Nie, Y., He, S. et al. A universal foundation model for grounded biomedical image interpretation. Nat Commun (2026). https://doi.org/10.1038/s41467-026-73986-1

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  • Received: 07 July 2025

  • Accepted: 27 May 2026

  • Published: 04 June 2026

  • DOI: https://doi.org/10.1038/s41467-026-73986-1

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