Abstract
Dysfunction of natural killer (NK) cells can be associated with tumor-derived lactate in the tumor microenvironment. Lactate-induced lysine lactylation (Kla) is a posttranslational modification, and strategies aimed at augmenting NK cell resistance to Kla might enhance cytotoxicity. Here we show that increased Kla levels in NK cells are accompanied by impaired nicotinamide adenine dinucleotide metabolism, fragmented mitochondria and reduced cytotoxicity. Supplementation with nicotinamide riboside (a nicotinamide adenine dinucleotide precursor) and honokiol (a SIRT3 activator) enhanced NK cell cytotoxicity by reducing cellular Kla levels. This combination restores antileukemic activity of NK cells in vivo and ex vivo by modulating Kla on ROCK1, thereby inhibiting ROCK1–DRP1 signaling to prevent mitochondrial fragmentation. Altogether, this study shows how lactylation can compromise NK cells and highlights this lactylation as a target for NK cell-based immunotherapy to enhance resilience to lactate in the tumor microenvironment.
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Data availability
This study made use of data from the HPA database, which can be accessed at https://www.proteinatlas.org/. All data supporting the findings of this study are included in the article and Supplementary Information. Source data are provided with this paper.
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Acknowledgements
This project was supported by Strategic Priority Research Program of the Chinese Academy of Sciences (XDB0940202 to Y.W.); The National Natural Science Foundation of China (22277115, 31770886, 31972933 and 82370217 to Y.W., C.D. and D.W.); National Key R&D Program of China (2017YFA0505102 to C.D.); The Anhui Natural Science Foundation (2408085MH193 and 2308085Y46 to J.J. and D.W.). We express our gratitude to Y. Yang and Y. Zhao from East China University of Science and Technology for generously providing the template plasmid for the NAD+ probe.
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Y.W. and J.J. conceived and conducted the project. Y.W., H.W., C.D and D.W. supervised the project. Y.W. and J.J. wrote the paper. J.J., P.Y., D.W., L.B. and H.L. performed the experiments and data analysis. X.Z. and H.Z. provided human samples.
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Extended data
Extended Data Fig. 1 Measurement of lactate and validation of NAD+ sensor in NK cells.
(a) Lactate concentrations in the bone marrow fluid were measured in 2 groups of AML patients: those without relapse (n = 21) and those with relapse (n = 18). (b) DNA gel electrophoresis showed the cpYFP or FiNAD PCR amplified bands. The image is representative of three independent experiments. (c) Representative immunofluorescence images (left) and quantification (right) of mCherry-cpYFP or mCherry-FiNad levels in BMNK cells from AML patients with relapse (n = 5). Each dot represents a single field. Scale bars, 50 μm. (d) Representative immunofluorescence images (left) and quantification (right) of mCherry-cpYFP levels in BMNK cells from AML patients (n = 8) without or with relapse. Each dot represents a single field. Scale bars, 50 μm. (e) Gating strategy of NK cells for flow cytometry. For all experiments, FSC-A vs. SSC-A gates of the starting cell population were used to identify viable cells. Singlet cells were identified using FSC-A vs. FSC-H gating. Then, target cell population for further analysis were gated by cell surface marker. NK cells were gated by Dead-CD45+CD56+CD3-. (f) Immunoblot analysis (left) and quantification (right, n = 3) of the Kla level in total cell lysates isolated from naive healthy human NK cells subjected to the following treatments for 24 h: dichloroacetate (DCA, 20 mM), rotenone (20 nM), or Ep300 inhibitors (SGC-CBP30, 10 µM; C646, 10 µM), respectively. The image is representative of three independent experiments (β-actin as loading control). (g) Flow cytometry analysis (left) and quantification (right, n = 4) of the percentage of Annexin V+ K562 cells (target cells) co-cultured for 4 h with naive healthy human NK cells under the indicated treatments. Data in a, c and d were analyzed by two-tailed unpaired Student’s t-test; data in f and g were analyzed by one-way ANOVA with Tukey’s multiple comparisons test; means ± SD.
Extended Data Fig. 2 NR enhances the anti-leukemic activity of BMNK cells.
(a) Representative immunofluorescence images (left) and quantification (right) of mCherry-cpYFP levels in BMNK cells (n = 8 patients) without or with NR treatment (1 mM). Each dot represents a single field. Scale bars, 50 μm. (b-d) Flow cytometry analysis of the percentage of Annexin V+ HL60 cells (target cells) co-cultured for 4 h with control BMNK cells or NR-treated BMNK cells (b and d). Flow cytometry analysis of NKG2D (left, c), CD38 (middle, c) and CD160 (right, c) expression on control BMNK cells or NR-treated BMNK cells (c and d). n = 10 patients. (e-f) Flow cytometry analysis of the proportion of CD107a+ NK (e) and Granzyme B+ NK cells (f) within the total population of control BMNK cells or NR-treated BMNK cells that were co-cultured with HL60 cells for 4 h. n = 10 patients. (g-i) Flow cytometry analysis of the percentage of Annexin V+ MOLM-13 cells (target cells) co-cultured for 4 h with control BMNK cells or NR-treated BMNK cells (g and i). Flow cytometry analysis showing NKG2D (left, h), CD38 (middle, h) and CD160 (right, h) expression on control BMNK cells or NR-treated BMNK cells (h and i). n = 10 patients. (j-k) Flow cytometry analysis of the proportion of CD107a+ NK (j) and Granzyme B+ NK cells (k) within the total population of control BMNK cells or NR-treated BMNK cells that were co-cultured with MOLM-13 cells for 4 h. n = 7 patients. Data in a were analyzed by two-tailed unpaired Student’s t-test; data in d-f, i-k were analyzed by two-tailed paired Student’s t-test; means ± SD.
Extended Data Fig. 3 NR increases NAD+ levels in NaLa-treated PBMC-derived NK cells.
(a) TEM showed mitochondrial morphology of activated healthy donor (HD) NK cells stimulated with NaLa (25 mM), or co-stimulated with NR (1 mM), or co-stimulated with HKL (100 μM), or co-stimulated with NR plus HKL for 24 h. The bottom-row images are magnified views of the areas in red dashed boxes above. Scale bars, 1 μm. The image is representative of three independent experiments. (b) Length of each mitochondrion (left) in each group (Each dot = 1 mitochondrion). Quantification (middle) and frequency (right) of fractured mitochondria in a single field of each group (Each dot = a single field). n = 8 donors. (c) Representative immunofluorescence images (left) and quantification (right) of mCherry-FiNad levels in naive healthy human NK cells with NaLa alone or co-stimulated with NR. Each dot represents a single field. Scale bars, 50 μm. n = 5 donors. (d) Representative immunofluorescence images (left) and quantification (right) of mCherry-FiNad levels in activated healthy human NK cells with NaLa alone or co-stimulated with NR. Each dot represents a single field. Scale bars, 50 μm. n = 5 donors. (e) Flow cytometry analysis of the percentage of Annexin V+ primary AML blasts (target cells) co-cultured for 4 h with activated healthy human NK cells subjected to various treatments (1st row); proportion of CD107a+ NK cells (2nd row), IFN-γ+ NK cells (3rd row) and Granzyme B+ NK cells (4th row) within the total population of activated healthy human NK cells with various treatments and were co-cultured with primary AML blasts. n = 8 donors. (f) Flow cytometry analysis of NKG2D, CD160 and CD38 expression on activated healthy human NK cells with indicated conditions. n = 8 donors. The data in b-f were analyzed by one-way ANOVA with Tukey’s multiple comparisons test; means ± SD.
Extended Data Fig. 4 NR and HKL restore mitochondrial dysfunction in NK cells.
(a) OCRs of naive healthy human NK cells that stimulated with NaLa alone (25 mM), or co-stimulated with NR (1 mM), or co-stimulated HKL (100 μM), or co-stimulated with NR plus HKL were measured under basal condition and in response to oligomycin, the mitochondrial decoupler FCCP, and Rotenone + Antimycin A (left). OCR values were estimated for basal respiration (middle) and maximal respiration rates (right). n = 5. (b) OCRs of activated healthy human NK cells that stimulated with NaLa alone (25 mM), or co-stimulated with NR (1 mM), or co-stimulated HKL (100 μM), or co-stimulated with NR plus HKL were measured under basal and in-response conditions (oligomycin, FCCP, and Rotenone + Antimycin A; left). OCR values of basal (middle) and maximal respiration rates (right). n = 5. (c) Flow cytometry analysis (left) and quantification (right, n = 8) of the proportion of TMRM+ (upper) and MitoTracker Green+ (bottom) naive healthy human NK cells subjected to the above treatment conditions. (d) Flow cytometry analysis (left) and quantification (right, n = 8) of the proportion of TMRM+ (upper) and MitoTracker Green+ (bottom) activated healthy human NK cells subjected to the above treatments. Data in a-d were analyzed by one-way ANOVA with Tukey’s multiple comparisons test; means ± SD.
Extended Data Fig. 5 NR and HKL restore the effector function of PBMC-derived NK cells.
(a-b) Flow cytometry analysis of the percentage of Annexin V+ K562 cells (target cells) co-cultured for 4 h with naive or activated healthy human NK cells subjected to various treatments; the proportion of CD107a+ NK cells, IFN-γ+ NK cells and Granzyme B+ NK cells within the total population of these NK cells; the expression of NKG2D, CD160 and CD38 on these NK cell. n = 8. (c-d) Flow cytometry analysis of the percentage of Annexin V+ HL60 cells (target cells) co-cultured for 4 h with naive or activated healthy human NK cells subjected to various treatments; the proportion of CD107a+ NK cells, IFN-γ+ NK cells and Granzyme B+ NK cells within the total population of these NK cells; the expression of NKG2D, CD160 and CD38 on these NK cell. n = 8. (e-f) Flow cytometry analysis of the percentage of Annexin V+ MOLM-13 cells (target cells) co-cultured for 4 h with naive or activated healthy human NK cells subjected to various treatments; the proportion of CD107a+ NK cells, IFN-γ+ NK cells and Granzyme B+ NK cells within the total population of these NK cells; the expression of NKG2D, CD160 and CD38 on these NK cell. n = 8. Data in a-f were analyzed by one-way ANOVA with Tukey’s multiple comparisons test; means ± SD.
Extended Data Fig. 6 NR and HKL restore NaLa-induced NK cell dysfunction in vivo.
(a) Experimental scheme: NCG mice were injected with 5×105 HL60 cells (target cells) stably expressing luciferase into the tail vein. After confirmation of engraftment by bioluminescence imaging on day 7, 2.5×106 healthy human PBMC-derived NK cells were transferred to all the mice via tail vein. NK cells: target cells ratio = 5:1. NK cells were treated with vehicle control, or NaLa (25 mM), or NaLa in combination with NR (1 mM), or NaLa in combination with NR and HKL (100 μM). n = 7 mice per group. AML burden was monitored by bioluminescence imaging at the indicated time points. (b) Bioluminescence imaging of AML burden. (c) AML burden was quantified as the average value of the total flux (p/s). n = 7 mice per group. (d) Kaplan-Meier survival curve of mice bearing HL60 cell-derived tumors. Statistical significance was determined by log-rank Mantel-Cox test. n = 7 mice per group. Data in c were analyzed by one-way ANOVA with Tukey’s multiple comparisons test; means ± SD.
Extended Data Fig. 7 NR and HKL augment the anti-leukemic function of BMNK cells.
(a) Flow cytometry (FCM) analysis of percentage of Annexin V+ K562 cells co-cultured with control, NR-treated or in combination with HKL-treated BMNK cells. n = 12. (b-c) FCM analysis of proportion of Granzyme B+ (n = 11, b), CD107a+ and IFN-γ+ NK cells (n = 8, c) within total population of control, NR-treated or in combination with HKL-treated BMNK cells that co-cultured with K562 cells. (d) FCM analysis of NKG2D (left), CD38 (middle) and CD160 (right) expression on control, NR-treated or in combination with HKL-treated BMNK cells that co-cultured with K562 cells. n = 11. (e) FCM analysis of percentage of Annexin V+ MOLM-13 cells co-cultured with control, NR-treated or in combination with HKL-treated BMNK cells. n = 10. (f-g) FCM analysis of proportion of Granzyme B+ (f), CD107a+ and IFN-γ+ NK cells (g) within total population of control, NR-treated or in combination with HKL-treated BMNK cells that co-cultured with MOLM-13 cells. n = 8. (h) FCM analysis of NKG2D (left), CD38 (middle) and CD160 (right) expression on control, NR-treated or in combination with HKL-treated BMNK cells that co-cultured with MOLM-13 cells. n = 10. (i) FCM analysis of percentage of Annexin V+ HL60 cells co-cultured with control, NR-treated or in combination with HKL-treated BMNK cells. n = 8. (j-k) FCM analysis of proportion of Granzyme B+ (j), CD107a+ and IFN-γ+ NK cells (k) within total population of control, NR-treated or in combination with HKL-treated BMNK cells that co-cultured with HL60 cells. n = 8. (l) FCM analysis of NKG2D (left), CD38 (middle) and CD160 (right) expression on control, NR-treated or in combination with HKL-treated BMNK cells that co-cultured with HL60 cells. n = 10. Data in a-l were analyzed by one-way ANOVA with Tukey’s multiple comparisons test; means ± SD.
Extended Data Fig. 8 NR and HKL or an ROCK1 inhibitor enhance NK cell cytotoxicity.
(a-b) Flow cytometry analysis of the percentage of Annexin V+ MOLM-13 cells (a) or Annexin V+ HL60 cells (b) after co-culturing for 4 h with naive healthy human NK cells stimulated with NaLa alone (25 mM), co-stimulated with NR (1 mM) plus HKL (100 μM), or co-stimulated with ROCK1 inhibitor (GSK429286A, 10 μM). n = 8. (c-d) Flow cytometry analysis of the percentage of Annexin V+ MOLM-13 cells (c) or Annexin V+ HL60 cells (d) following co-culture for 4 h with activated healthy human NK cells stimulated with NaLa alone (25 mM), co-stimulated with NR (1 mM) plus HKL (100 μM), or co-stimulated with ROCK1 inhibitor (GSK429286A, 10 μM). n = 8. (e-f) Flow cytometry analysis of the percentage of Annexin V+ MOLM-13 cells (e) or Annexin V+ HL60 cells (f) following co-culture for 4 h with BMNK cells from the relapsed AML patients (n = 9) treated with NR (1 mM) plus HKL (100 μM), or treated with ROCK1 inhibitor (GSK429286A, 10 μM). Data in a-f were analyzed by one-way ANOVA with Tukey’s multiple comparisons test; means ± SD.
Extended Data Fig. 9 The investigation of potential targets in modulating Kla in NK cells.
(a) Immunoblot of Kla and SIRT3 in total cell lysates isolated from BMNK cells of AML patients (n = 4) without or with relapse. GAPDH served as loading control. (b) Immunoblot of Kla in total cell lysates isolated from naive healthy human NK cells overexpressing HDAC1-3 or SIRT1-2. β-actin served as loading control. (c) Immunoblot of Kla on ENO1 or PGK1 in total cell lysates isolated from naive healthy human NK cells without or with Sirt3 shRNA transduction in the presence of NR (1 mM). β-actin served as loading control. (d) Flow cytometry analysis of ROS levels in naive healthy human NK cells subjected to the indicated treatments. n = 5. (e) Flow cytometry analysis of percentage of Annexin V+ K562 cells (target cells) co-cultured for 4 h with naive healthy human NK cells subjected to the indicated treatments. n = 5. Data in a-c are representative of three independent experiments. Data in d-e were analyzed by one-way ANOVA with Tukey’s multiple comparisons test; means ± SD.
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Jin, J., Yan, P., Wang, D. et al. Targeting lactylation reinforces NK cell cytotoxicity within the tumor microenvironment. Nat Immunol 26, 1099–1112 (2025). https://doi.org/10.1038/s41590-025-02178-8
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DOI: https://doi.org/10.1038/s41590-025-02178-8
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