Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Advertisement

Scientific Reports
  • View all journals
  • Search
  • My Account Login
  • Content Explore content
  • About the journal
  • Publish with us
  • Sign up for alerts
  • RSS feed
  1. nature
  2. scientific reports
  3. articles
  4. article
Handcrafted MRI radiomics of enlarged perivascular spaces and machine learning predict cognitive impairment and sleep disturbance in young adults
Download PDF
Download PDF
  • Article
  • Open access
  • Published: 13 January 2026

Handcrafted MRI radiomics of enlarged perivascular spaces and machine learning predict cognitive impairment and sleep disturbance in young adults

  • Li Li1 na1,
  • Jiaojiao Wu2 na1,
  • Bin Li3,
  • Rui Hua2,
  • Feng Shi2,
  • Lizhou Chen4 &
  • …
  • Yeke Wu5 

Scientific Reports , Article number:  (2026) Cite this article

  • 531 Accesses

  • Metrics details

We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Biomarkers
  • Computational biology and bioinformatics
  • Diseases
  • Mathematics and computing
  • Medical research
  • Nephrology
  • Risk factors

Abstract

Our study seeks to develop a predictive model using MRI-derived enlarged perivascular spaces (EPVSs) measurements and machine learning to assess cognitive impairment, subjective sleep quality, and excessive daytime sleepiness in young adults with long-time mobile phone use (LTMPU). We enrolled 82 participants and employed a pretrained deep learning model (VB-Net) to automatically segment EPVSs lesions across 17 brain subregions, extracting four handcrafted radiomic features – predefined based on morphological properties – per subregion (EPVSs count, volume, mean length, and mean curvature). The cohort was randomly divided into training (80%) and testing (20%) sets. Through minimum redundancy maximum relevance (mRMR) feature selection, six key biomarkers from 68 initial EPVSs metrics were identified combined with sex and age covariates. Final models were constructed using a Gaussian process (GP) classifier for cognitive impairment and decision tree (DT) algorithms for sleep quality and excessive sleepiness assessment. In testing, the GP model achieved an AUC of 0.818 (95% confidence interval [CI] 0.610-1) for cognitive impairment prediction. The DT models showed AUCs of 0.826 (95% CI: 0.616-1) for sleep quality and 0.875 (95% CI: 0.718-1) for daytime sleepiness. This automated radiomics pipeline demonstrates EPVSs morphological features as potential biomarkers for evaluating mobile phone exposure-related neurocognitive dysfunction. This automated radiomics pipeline suggests that EPVSs morphological features might be beneficial for evaluating mobile phone exposure-related neurocognitive dysfunction.

Data availability

All data generated or analysed during this study are included in this published article and its supplementary information files. The data presented in this study are available on request from the corresponding author. Analysis utilized uAI research portal (v20240730) with open-source Python/scikit-learn/PyTorch implementations. De-identified data available upon request.

Code availability

The analytical workflow consists of two reproducible components: (1) EPVSs segmentation and feature quantification: Implemented via the uAI research portal (version 20240730, United Imaging Intelligence) – a commercially available standardized software platform. Any user with access to this software can obtain the same segmentation results and feature matrices (in tabular format) directly, without the need for custom coding or script manipulation. (2) Statistical analysis and predictive modeling: Custom code for this component is available on GitHub (https://github.com/simonsf/EPVS-Radiomics-ML). The code is built on open-source libraries: Python (v3.9.5), scikit-learn (v1.6.1), and PyTorch (v1.12.1). It includes complete implementations of z-score normalization, mRMR feature selection, GP/DT model training, model evaluation, and result visualization.

References

  1. Joshi, S. C., Woltering, S. & Woodward, J. Cell phone social media use and psychological Well-Being in young adults: implications for Internet-Related disorders. Int J. Environ. Res. Public. Health 20 (2023).

  2. Liu, S. et al. The associations of long-time mobile phone use with sleep disturbances and mental distress in technical college students: a prospective cohort study. Sleep 42 (2019).

  3. Brautsch, L. A. et al. Digital media use and sleep in late adolescence and young adulthood: A systematic review. Sleep. Med. Rev. 68, 101742 (2023).

    Google Scholar 

  4. Nowak, M. et al. Correlations between problematic mobile phone use and depressiveness and daytime Sleepiness, as well as perceived social support in adolescents. Int J. Environ. Res. Public. Health 19 (2022).

  5. Wacks, Y. & Weinstein, A. M. Excessive smartphone use is associated with health problems in adolescents and young adults. Front. Psychiatry. 12, 669042 (2021).

    Google Scholar 

  6. Clarke, A. J. et al. Risk factors for the neurodegenerative dementias in the Western Pacific region. Lancet Reg. Health West. Pac. 50, 101051 (2024).

    Google Scholar 

  7. Sadeghmousavi, S., Eskian, M., Rahmani, F. & Rezaei, N. The effect of insomnia on development of alzheimer’s disease. J. Neuroinflammation. 17, 289 (2020).

    Google Scholar 

  8. Zhao, M., Li, J., Xiang, L., Zhang, Z. H. & Peng, S. L. A diagnosis model of dementia via machine learning. Front. Aging Neurosci. 14, 984894 (2022).

    Google Scholar 

  9. Mason, G. M., Lokhandwala, S., Riggins, T. & Spencer, R. M. C. Sleep and human cognitive development. Sleep. Med. Rev. 57, 10147 (2021).

    Google Scholar 

  10. Li, M., Wang, N. & Dupre, M. E. Association between the self-reported duration and quality of sleep and cognitive function among middle-aged and older adults in China. J. Affect. Disord. 304, 20–27 (2022).

    Google Scholar 

  11. Slonkova, J. et al. Hypocretin-1/orexin-A, sleep and excessive daytime sleepiness in patients with nonconvulsive status epilepticus: A cross-sectional cohort study. Sleep. Med. 119, 192–200 (2024).

    Google Scholar 

  12. Cai, Y. et al. Comparing machine learning-derived MRI-based and blood-based neurodegeneration biomarkers in predicting syndromal conversion in early AD. Alzheimers Dement. 19, 4987–4998 (2023).

    Google Scholar 

  13. Pérez-Carbonell, L., Mignot, E., Leschziner, G. & Dauvilliers, Y. Understanding and approaching excessive daytime sleepiness. Lancet 400, 1033–1046 (2022).

    Google Scholar 

  14. McCarter, S. J. et al. Physiological markers of sleep quality: A scoping review. Sleep. Med. Rev. 64, 101657 (2022).

    Google Scholar 

  15. Liu, X. et al. Gait can reveal sleep quality with machine learning models. PLoS One. 14, e0223012 (2019).

    Google Scholar 

  16. Jeon, J. et al. Accuracy of machine learning using the Montreal cognitive assessment for the diagnosis of cognitive impairment in parkinson’s disease. J. Mov. Disord. 15, 132–139 (2022).

    Google Scholar 

  17. Ding, J. et al. Large perivascular spaces visible on magnetic resonance Imaging, cerebral small vessel disease Progression, and risk of dementia: the Age, Gene/Environment Susceptibility-Reykjavik study. JAMA Neurol. 74, 1105–1112 (2017).

    Google Scholar 

  18. Duering, M. et al. Neuroimaging standards for research into small vessel disease-advances since 2013. Lancet Neurol. 22, 602–618 (2023).

    Google Scholar 

  19. Wardlaw, J. M. et al. Perivascular spaces in the brain: anatomy, physiology and pathology. Nat. Rev. Neurol. 16, 137–153 (2020).

    Google Scholar 

  20. Song, T. J. et al. Moderate-to-severe obstructive sleep apnea is associated with cerebral small vessel disease. Sleep. Med. 30, 36–42 (2017).

    Google Scholar 

  21. Berezuk, C. et al. Virchow-Robin spaces: correlations with Polysomnography-Derived sleep parameters. Sleep 38, 853–858 (2015).

    Google Scholar 

  22. Dredla, B. K., Brutto, D., Castillo, P. R. & O. H. & Sleep and perivascular spaces. Curr. Neurol. Neurosci. Rep. 23, 607–615 (2023).

    Google Scholar 

  23. Piantino, J. A., Iliff, J. J. & Lim, M. M. The bidirectional link between sleep disturbances and traumatic brain injury symptoms: A role for glymphatic dysfunction? Biol. Psychiatry. 91, 478–487 (2022).

    Google Scholar 

  24. Wang, X. X. et al. MRI-visible enlarged perivascular spaces: imaging marker to predict cognitive impairment in older chronic insomnia patients. Eur. Radiol. 32, 5446–5457 (2022).

    Google Scholar 

  25. Greener, J. G., Kandathil, S. M., Moffat, L. & Jones, D. T. A guide to machine learning for biologists. Nat. Rev. Mol. Cell. Biol. 23, 40–55 (2022).

    Google Scholar 

  26. Ward, S. A. & Pase, M. P. Advances in pathophysiology and neuroimaging: implications for sleep and dementia. Respirology 25, 580–592 (2020).

    Google Scholar 

  27. Zhu, Y. C. et al. High degree of dilated Virchow-Robin spaces on MRI is associated with increased risk of dementia. J. Alzheimers Dis. 22, 663–672 (2010).

    Google Scholar 

  28. Del Brutto, O. H. et al. Long coronavirus disease-related persistent poor sleep quality and progression of enlarged perivascular spaces. A longitudinal study. Sleep 45 (2022).

  29. Aribisala, B. S. et al. Sleep quality, perivascular spaces and brain health markers in ageing - A longitudinal study in the Lothian birth cohort 1936. Sleep. Med. 106, 123–131 (2023).

    Google Scholar 

  30. Shih, N. C. et al. Effects of sleep on brain perivascular space in a cognitively healthy population. Sleep. Med. 111, 170–179 (2023).

    Google Scholar 

  31. Ortega-Leonard, L. V. Del Río-Portilla, Y. EEG spectral power during REM sleep in patients with frontal brain tumor. BMC Neurol. 23, 195 (2023).

    Google Scholar 

  32. Liu, C. et al. Brain structural-functional coupling mechanism in mild subcortical stroke and its relationship with cognition. Brain Res. 1845, 149167 (2024).

    Google Scholar 

  33. Biesbroek, J. M., Verhagen, M. G., van der Stigchel, S. & Biessels, G. J. When the central integrator disintegrates: A review of the role of the thalamus in cognition and dementia. Alzheimers Dement. 20, 2209–2222 (2024).

    Google Scholar 

  34. Li, M. G. et al. Structural and functional thalamic changes in parkinson’s disease with mild cognitive impairment. J. Magn. Reson. Imaging. 52, 1207–1215 (2020).

    Google Scholar 

  35. Del Brutto, O. H., Mera, R. M., Brutto, D., Castillo, P. R. & V. J. & Enlarged basal ganglia perivascular spaces and sleep parameters. A population-based study. Clin. Neurol. Neurosurg. 182, 53–57 (2019).

    Google Scholar 

  36. Martineau-Dussault, M. et al. Medial Temporal lobe and obstructive sleep apnea: effect of sex, age, cognitive status and free-water. Neuroimage Clin. 36, 103235 (2022).

    Google Scholar 

  37. Pham, W. et al. A critical guide to the automated quantification of perivascular spaces in magnetic resonance imaging. Front. Neurosci. 16, 1021311 (2022).

    Google Scholar 

  38. Zhang, Z. et al. Quantitative analysis of multimodal MRI markers and clinical risk factors for cerebral small vessel disease based on deep learning. Int. J. Gen. Med. 17, 739–750 (2024).

    Google Scholar 

  39. Ballerini, L. et al. Computational quantification of brain perivascular space morphologies: associations with vascular risk factors and white matter hyperintensities. A study in the Lothian birth cohort 1936. Neuroimage Clin. 25, 102120 (2020).

    Google Scholar 

  40. Levy, B. et al. Machine learning enhances the efficiency of cognitive screenings for primary care. J. Geriatr. Psychiatry Neurol. 32, 137–144 (2019).

    Google Scholar 

  41. Oldfield, R. C. The assessment and analysis of handedness: the Edinburgh inventory. Neuropsychologia 9, 97–113 (1971).

    Google Scholar 

  42. Krzywinski, M. & Altman, N. Points of significance: importance of being uncertain. Nat. Methods. 10, 809–810 (2013).

    Google Scholar 

  43. Chen, X. Y., Chen, Z. Y., Dong, Z., Liu, M. Q. & Yu, S. Y. Regional volume changes of the brain in migraine chronification. Neural Regen Res. 15, 1701–1708 (2020).

    Google Scholar 

  44. Hou, A. et al. Widespread aberrant functional connectivity throughout the whole brain in obstructive sleep apnea. Front. Neurosci. 16, 920765 (2022).

    Google Scholar 

  45. Morin, C. M., Belleville, G., Bélanger, L. & Ivers, H. The insomnia severity index: psychometric indicators to detect insomnia cases and evaluate treatment response. Sleep 34, 601–608 (2011).

    Google Scholar 

  46. Wu, J. et al. uRP: an integrated research platform for one-stop analysis of medical images. Front. Radiol. 3, 1153784 (2023).

    Google Scholar 

  47. Shi, F. et al. Deep learning empowered volume delineation of whole-body organs-at-risk for accelerated radiotherapy. Nat. Commun. 13, 6566 (2022).

    Google Scholar 

  48. Desikan, R. S. et al. An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage 31, 968–980 (2006).

    Google Scholar 

  49. Avants, B. B. et al. The insight toolkit image registration framework. Front. Neuroinform. 8, 44 (2014).

    Google Scholar 

  50. Michalski, A., Duraj, K. & Kupcewicz, B. Leukocyte deep learning classification assessment using Shapley additive explanations algorithm. Int. J. Lab. Hematol. 45, 297–302 (2023).

    Google Scholar 

Download references

Funding

This work was supported by the National Natural Science Foundation of China (grant number: 81801683, 82074303, 82174345, 81973684), Sichuan Key Research and Development Project (grant number: 2023YFS0226), Natural Science Foundation of Sichuan Province (grant number: 2023NSFSC1760), and Health Commission of Chengdu and Chengdu University of Traditional Chinese Medicine Joint Innovation Fund in 2024 (grant number: WXLH202403045, WXLH202403198, WXLH202402019, WXLH202403012).

Author information

Author notes
  1. Li Li and Jiaojiao Wu contributed equally to this work.

Authors and Affiliations

  1. Department of Radiology, Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu, 610072, Sichuan, China

    Li Li

  2. Department of Research and Development, United Imaging Intelligence, Shanghai, 200232, China

    Jiaojiao Wu, Rui Hua & Feng Shi

  3. Department of Geriatrics, Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu, 610072, Sichuan, China

    Bin Li

  4. Department of Radiology, West China Hospital of Sichuan University, No. 37, Guoxue Alley, Chengdu, 610041, Sichuan, China

    Lizhou Chen

  5. Department of Stomatology, Hospital of Chengdu University of Traditional Chinese Medicine, No. 39, Shierqiao Rd, Chengdu, 610072, Sichuan, China

    Yeke Wu

Authors
  1. Li Li
    View author publications

    Search author on:PubMed Google Scholar

  2. Jiaojiao Wu
    View author publications

    Search author on:PubMed Google Scholar

  3. Bin Li
    View author publications

    Search author on:PubMed Google Scholar

  4. Rui Hua
    View author publications

    Search author on:PubMed Google Scholar

  5. Feng Shi
    View author publications

    Search author on:PubMed Google Scholar

  6. Lizhou Chen
    View author publications

    Search author on:PubMed Google Scholar

  7. Yeke Wu
    View author publications

    Search author on:PubMed Google Scholar

Contributions

Li Li: Writing—review & editing, Writing—original draft, Visualization, Software, Methodology, Formal analysis, Data curation, Conceptualization. Jiaojiao Wu: Writing—review & editing, Writing—original draft, Visualization, Software, Methodology, Formal analysis, Data curation, Conceptualization. Bin Li: Writing—review & editing, Writing—original draft, Visualization, Formal analysis, Data curation. Rui Hua: Writing—review & editing, Writing—original draft, Visualization, Formal analysis, Data curation. Feng Shi: Writing—review & editing, Writing—original draft, Visualization, Formal analysis, Data curation. Lizhou Chen: Writing—review & editing, Supervision, Project administration, Methodology, Formal analysis. Yeke Wu: Writing—review & editing, Supervision, Project administration, Methodology, Formal analysis.

Corresponding authors

Correspondence to Lizhou Chen or Yeke Wu.

Ethics declarations

Competing interests

The authors declare no competing interests.

Additional information

Publisher’s note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary Information

Below is the link to the electronic supplementary material.

Supplementary Material 1

Rights and permissions

Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Li, L., Wu, J., Li, B. et al. Handcrafted MRI radiomics of enlarged perivascular spaces and machine learning predict cognitive impairment and sleep disturbance in young adults. Sci Rep (2026). https://doi.org/10.1038/s41598-026-35845-3

Download citation

  • Received: 04 November 2024

  • Accepted: 08 January 2026

  • Published: 13 January 2026

  • DOI: https://doi.org/10.1038/s41598-026-35845-3

Share this article

Anyone you share the following link with will be able to read this content:

Sorry, a shareable link is not currently available for this article.

Provided by the Springer Nature SharedIt content-sharing initiative

Keywords

  • Enlarged perivascular spaces
  • Magnetic resonance imaging
  • Machine learning
  • Cognitive impairment
  • Sleep disturbance
Download PDF

Advertisement

Explore content

  • Research articles
  • News & Comment
  • Collections
  • Subjects
  • Follow us on Facebook
  • Follow us on Twitter
  • Sign up for alerts
  • RSS feed

About the journal

  • About Scientific Reports
  • Contact
  • Journal policies
  • Guide to referees
  • Calls for Papers
  • Editor's Choice
  • Journal highlights
  • Open Access Fees and Funding

Publish with us

  • For authors
  • Language editing services
  • Open access funding
  • Submit manuscript

Search

Advanced search

Quick links

  • Explore articles by subject
  • Find a job
  • Guide to authors
  • Editorial policies

Scientific Reports (Sci Rep)

ISSN 2045-2322 (online)

nature.com sitemap

About Nature Portfolio

  • About us
  • Press releases
  • Press office
  • Contact us

Discover content

  • Journals A-Z
  • Articles by subject
  • protocols.io
  • Nature Index

Publishing policies

  • Nature portfolio policies
  • Open access

Author & Researcher services

  • Reprints & permissions
  • Research data
  • Language editing
  • Scientific editing
  • Nature Masterclasses
  • Research Solutions

Libraries & institutions

  • Librarian service & tools
  • Librarian portal
  • Open research
  • Recommend to library

Advertising & partnerships

  • Advertising
  • Partnerships & Services
  • Media kits
  • Branded content

Professional development

  • Nature Awards
  • Nature Careers
  • Nature Conferences

Regional websites

  • Nature Africa
  • Nature China
  • Nature India
  • Nature Japan
  • Nature Middle East
  • Privacy Policy
  • Use of cookies
  • Legal notice
  • Accessibility statement
  • Terms & Conditions
  • Your US state privacy rights
Springer Nature

© 2026 Springer Nature Limited

Nature Briefing: Translational Research

Sign up for the Nature Briefing: Translational Research newsletter — top stories in biotechnology, drug discovery and pharma.

Get what matters in translational research, free to your inbox weekly. Sign up for Nature Briefing: Translational Research