Benchmarking cell type and gene set annotation by large language models with AnnDictionary

Journal:

Nature Communications

Published:

2025-10-28

DOI:

10.1038/s41467-025-64511-x

Affiliations:

60

Authors:

173

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Institutions	Authors	Share
Stanford University School of Medicine, United States of America (USA)	55.166667 55.166667 55.166667 55.166667 55.166667 55.166667	0.32
University of California, San Francisco (UCSF), United States of America (USA)	37.500000 37.500000 37.500000 37.500000	0.22
Stanford University, United States of America (USA)	28.000000 28.000000 28.000000	0.16
Chan Zuckerberg Biohub (CZ Biohub), United States of America (USA)	17.333333 17.333333	0.10
Donor Network West, United States of America (USA)	13.500000 13.500000	0.08
Stanford Medicine, United States of America (USA)	10.833333 10.833333	0.06
University of California, Berkeley (UC Berkeley), United States of America (USA)	2.333333	0.01
Vanderbilt University Medical Center (VUMC), United States of America (USA)	2.000000	0.01
Stanford Health Care, United States of America (USA)	1.000000	0.01
Columbia University in the City of New York (CU), United States of America (USA)	1.000000	0.01
DCI Donor Services, Inc., United States of America (USA)	0.500000	0.00
Comprehensive Cancer Center Vienna (CCC), Austria	0.500000	0.00
San Francisco VA Medical Center (SFVAMC), United States of America (USA)	0.500000	0.00
UC San Diego Health Sciences, United States of America (USA)	0.500000	0.00
Chan Zuckerberg Initiative, United States of America (USA)	0.333333	0.00
Ragon Institute of MGH, MIT and Harvard, United States of America (USA)	0.333333	0.00
Data Intuitive Bvba, Belgium	0.333333	0.00
VIB-UGent Center for Inflammation Research (IRC), Belgium	0.333333	0.00
Ghent University (UGent), Belgium	0.333333	0.00
Aarhus University (AU), Denmark	0.333333	0.00
VA Palo Alto Healthcare System (VAPAHCS), United States of America (USA)	0.333333	0.00
Howard Hughes Medical Institute (HHMI), United States of America (USA)	0.000000	0.00

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