Bioinformatics and Computational Biology articles for France

Time frame: 1 June 2025 - 30 May 2026

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Count: 149

Article ‘Count’ for Bioinformatics and Computational Biology.

Journal Count Share
1 0.64
Plasma metabolites, dietary intakes, and breast cancer incidence: a prospective case-cohort study in NutriNet-Santé 0.64
3 1.08
A next-generation episignature for Kabuki syndrome enables fine mapping of the impact of KMT2D variants to inform precision medicine 0.04
MosCoverY: A method to estimate mosaic loss of Y chromosome from sequencing coverage data 0.50
SPINK1-related chronic pancreatitis: A model that encapsulates the spectrum of variant effects, genetic complexity, and classificatory challenges 0.55
9 4.53
MS-Net: Multi-Similarity-Based Network Annotation for Untargeted Metabolomics 1.00
Determination from Nontargeted Metabolite Profiling Using Internal and External Standards 0.05
Circulating Tumor DNA Monitoring in Patients with Uveal Melanoma Using Mutation-Agnostic Multiplex Drop-Off ddPCR Assays 1.00
Best Practices in GC–MS and GC × GC–MS-Based Metabolomics and Volatile Analyses: An International Survey 0.05
Decoding the Oxylipin Chemical Space Using Ion Identity Molecular Networking 0.18
Challenges and Good Practices in Preprocessing and Normalization of Untargeted DNA Adductomics Data in Exposomics Research 0.08
Disposable Carbon Screen-Printed Electrodes for On-Chip Protein Digestion: A Proteomic Approach Coupled to MALDI-TOF MS 1.00
Multilaboratory Untargeted Mass Spectrometry Metabolomics Collaboration to Identify Bottlenecks and Comprehensively Annotate A Single Dataset 0.17
Evaluation of a New Chemical Label iBASA/i: A Comparison with Gold Standards 1.00
1 0.81
Proximity‐Induced Transfer of a Mass Tag Enables Direct Profiling of Active Matrix Metalloproteases 0.81
2 0.28
A Multifaceted Interplay Among Hemophagocytosis, Interleukin‐18, and Type I Interferon Distinguishes Still Disease From Other Autoinflammatory Diseases 0.24
Distinct effects of complement C4A and C4B copy number in Systemic Sclerosis serological and clinical subtypes 0.05
1 0.37
IPSS-M risk and specific sex-associated somatic mutations predict response to ESA therapy in LR-MDS: building a new score 0.37
1 0.61
Multiomic integration reveals tumoral heterogeneity of lipid dependence within lethal group 3 medulloblastoma 0.61
1 0.01
Multi-cohort proteogenomic analyses reveal genetic effects across the proteome and diseasome 0.01
1 0.14
High-throughput Proteomics in Lymphangioleiomyomatosis: PMEL as a Diagnostic Biomarker, Construction of a Diagnosis Score and Evidence of Neutrophil Involvement. 0.14
1 0.12
Genome and Transcriptome-Wide Analyses Identify Multiple Candidate Genes and a Significant Polygenic Contribution in Bicuspid Aortic Valve. 0.12
1 0.44
Gene flow from the European wild apple and selection shaped the domesticated apple genome 0.44
1 1.00
Blood Sample Preparation for Human Chemical Exposomics: Insights from Large-Scale Applications 1.00
2 0.13
Genetic determinants of childhood blood pressure and heart rate in relation to adult health outcomes: the consortium of childhood blood pressure 0.09
<atl>Automated patch clamp data improve variant classification and penetrance stratification for iSCN5A/i –Brugada syndrome</atl> 0.04
10 4.78
Complete genetic and epigenetic architecture of D4Z4 macrosatellites in FSHD, BAMS, and reference cohorts with D4Z4End2End 0.08
Robust and efficient annotation of cell states through gene signature scoring 0.05
Natural diversity of telomere length distributions across 100 Saccharomyces cerevisiae strains 1.00
Early feature extraction drives model performance in high-resolution chromatin accessibility prediction 0.06
Phylogenetic relatedness rather than aquatic habitat fosters horizontal transfer of transposable elements in animals 0.90
Ultra-long sequencing for contiguous haplotype resolution of the human immunoglobulin heavy-chain locus 0.10
Mitotic chromosomes harbor cell type– and species-specific structural features within a universal loop array conformation 0.57
Highly accurate assembly polishing with DeepPolisher 0.02
Tissular chromatin-state cartography based on double-barcoded DNA arrays that capture unloaded PA-Tn5 transposase 1.00
Accurate genotyping of three major respiratory bacterial pathogens with ONT R10.4.1 long-read sequencing 1.00
1 0.10
Molecular-Based Ecosystem to Improve Personalized Medicine in Chronic Myelomonocytic Leukemia. 0.10
1 0.99
Molecularly guided therapies for advanced primary liver cancers refractory to systemic treatment: Results from the 2025 French genomic medicine initiative 0.99
1 0.02
Leveraging transdiagnostic genetic liability to psychiatric disorders to dissect clinical outcomes of anorexia nervosa 0.02
15 2.89
Saturation editing of reveals distinct dominant and recessive disorders 0.34
A sorghum pangenome reference improves global crop trait discovery 0.08
Lasting Lower Rhine–Meuse forager ancestry shaped Bell Beaker expansion 0.04
Mapping the genetic landscape across 14 psychiatric disorders 0.03
Eight millennia of continuity of a previously unknown lineage in Argentina 0.01
Evidence for improved DNA repair in long-lived bowhead whale 0.05
From genotype to phenotype with 1,086 near telomere-to-telomere yeast genomes 0.92
One mother for two species via obligate cross-species cloning in ants 0.75
Novel assembly of a head–trunk interface in the sister group of jawed vertebrates 0.44
Mouse lemur cell atlas informs primate genes, physiology and disease 0.04
A molecular cell atlas of mouse lemur, an emerging model primate 0.04
Pathology-oriented multiplexing enables integrative disease mapping 0.05
A haplotype-resolved pangenome of the barley wild relative 0.02
Range extender mediates long-distance enhancer activity 0.06
Ancient DNA reveals a two-clanned matrilineal community in Neolithic China 0.02
43 16.72
Population-scale chemical response revealed by a barcoded yeast collection 0.58
omicsGMF: a multi-tool for dimensionality reduction, batch correction and imputation in bulk- and single-cell proteomics 0.08
Recurrent structural variation and recent turnover at the 17q21.31 locus in humans and great apes 0.06
Integrated genomic analyses identify oncogenic pathway interplay in hepatocarcinogenesis defining specific molecular subtypes 0.83
Polycomb chromatin topology enables long-range enhancer recruitment during craniofacial development 0.04
A versatile multi-components mixed model for bacterial-Genome Wide association studies 0.86
Charting spatial ligand-target activity using Renoir 0.04
Proteome-wide prediction of the functional impact of missense variants with ProteoCast 1.00
Population differences of chromosome 22q11.2 duplication structure predispose differentially to microdeletion and inversion 0.02
Combining multiplexed assays of variant effect for enhanced BRCA2 variant classification 0.05
The adaptive molecular landscape of reprogrammed telomeric sequences 0.64
Experimental assessment of AI-based interactome mapping 0.01
Ancient DNA reveals 4000 years of grapevine diversity, viticulture and clonal propagation in France 0.96
Origins and breadth of pairwise epistasis in an α-helix of β-lactamase TEM-1 1.00
DIS3 mutations enhance AID-driven translocations during B-cell activation, promoting transformation to multiple myeloma 0.15
Partitioned polygenic scores show mechanistic heterogeneity in type 2 diabetes and hypertension comorbidity 0.37
MYC modulates TOP2A diffusion to promote substrate detection and activity 0.13
Genomic consequences of residual recombination in a hybrid apomictic hickory complex 0.07
Crowdsourced biodiversity monitoring fills gaps in global plant trait mapping 0.04
Automated mapping of DNA replication fork progression in human cells with ForkML 1.00
Development of a split-toxin CRISPR screening platform to systematically identify regulators of human myoblast fusion 0.14
Rad51 determines pathway usage in post-replication repair 0.20
sCellST predicts single-cell gene expression from H& E images 1.00
Identification of a deep-branching lineage of algae using environmental plastid genomes 0.38
Cohesin forms fountains at active enhancers in C. elegans 0.15
Expanding the utility of variant effect predictions with phenotype-specific models 0.19
A deep learning-based multiscale integration of spatial omics with tumor morphology 1.00
Genome architecture evolution in an invasive copepod species complex 0.11
Multi-centric origins and gene flow shape the diversity of β-thalassemia mutations in Southern East Asia 0.03
Endothelial RNF20 suppresses endothelial-to-mesenchymal transition and safeguards physiological angiocrine signaling to prevent congenital heart disease 0.05
The effect of type 2 diabetes genetic predisposition on non-cardiovascular comorbidities 0.03
TP53 variant clusters stratify phenotypic diversity in germline carriers and reveal an osteosarcoma-prone subgroup 0.17
Coordinated active repression operates via transcription factor cooperativity and multiple inactive promoter states in a developing organism 1.00
Multimodal spatial transcriptomic characterization of mouse kidney injury and repair 0.10
Computationally unmasking each fatty acyl C=C position in complex lipids by routine LC-MS/MS lipidomics 0.10
Machine learning in Alzheimer’s disease genetics 0.07
Mechanism of Rad51 filament formation by Rad52 and Rad55-Rad57 in homologous recombination 0.07
Single nucleosome imaging reveals principles of transient multiscale chromatin reorganization triggered by histone ADP-ribosylation at DNA lesions 0.79
Global diversity of soil-transmitted helminths reveals population-biased genetic variation that impacts diagnostic targets 0.01
Resolving out of Africa event for Papua New Guinean population using neural network 0.29
A large C-terminal Rad52 segment acts as a chaperone to Form and Stabilize Rad51 Filaments 1.00
Whole-genome sequencing of 1,060 isolates reveals significant phenotypic impact of acquired subgenomes in allopolyploids 1.00
H3.3 deposition counteracts the replication-dependent enrichment of H3.1 at chromocenters in embryonic stem cells 0.91
11 4.45
Pangenomic analyses of rose uncover widespread structure variation and empower genomics-directed breeding 0.07
GGC repeat expansions within new open reading frames are translated into toxic polyglycine proteins in oculopharyngodistal myopathy 0.68
A microenvironment-determined risk continuum refines subtyping in meningioma and reveals determinants of machine learning-based tumor classification 0.04
Transient histone deacetylase inhibition induces cellular memory of gene expression and 3D genome folding 1.00
Genomic and transcriptomic analyses of aortic stenosis enhance therapeutic target discovery and disease prediction 0.04
Investigation of a global mouse methylome atlas reveals subtype-specific copy number alterations in pediatric cancer models 0.06
Uniform dynamics of cohesin-mediated loop extrusion in living human cells 0.93
DNA methylation influences human centromere positioning and function 0.55
Genetic variation at transcription factor binding sites largely explains phenotypic heritability in maize 0.01
G-quadruplexes are promoter elements controlling nucleosome exclusion and RNA polymerase II pausing 1.00
Transferability of European-derived Alzheimer’s disease polygenic risk scores across multiancestry populations 0.07
1 0.00
Polygenic prediction of body mass index and obesity through the life course and across ancestries 0.00
6 2.23
SNP calling, haplotype phasing and allele-specific analysis with long RNA-seq reads 0.02
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny 0.02
Novae: a graph-based foundation model for spatial transcriptomics data 1.00
STORIES: learning cell fate landscapes from spatial transcriptomics using optimal transport 1.00
MSnLib: efficient generation of open multi-stage fragmentation mass spectral libraries 0.08
Morphological map of under- and overexpression of genes in human cells 0.11
1 0.01
Fine-mapping genomic loci refines bipolar disorder risk genes 0.01
1 0.08
Enhancer dynamics and cellular architecture in the human spinal cord 0.08
3 1.32
A metabolic atlas of the Klebsiella pneumoniae species complex reveals lineage-specific metabolism and capacity for intra-species co-operation 0.25
Dual transcriptional activities of PAX3 and PAX7 spatially encode spinal cell fates through distinct gene networks 0.96
A comprehensive atlas of full-length Arabidopsis eccDNA populations identifies their genomic origins and epigenetic regulation. 0.11
5 2.29
Mapping the gene regulatory landscape of archaic hominin introgression in modern Papuans 0.21
High-throughput analyses of a reconstituted diversity-generating retroelement identify intrinsic and extrinsic determinants of diversification 0.08
Establishment and maintenance of NRT2.1 inter-individual variability in plants 1.00
The highly dynamic pangenome of basal chordates is enriched in defence and immunity genes and is inherited following the Mendelian law. 0.33
Beyond recombination: Exploring the impact of meiotic frequency on genome-wide genetic diversity 0.67
1 0.89
A Super‐Pangenome for Cultivated Citrus Reveals Evolutive Features During the Allopatric Phase of Their Reticulate Evolution 0.89
8 1.56
Archaeogenetic insights into the demographic history of Late Neanderthals 0.09
A transcription regulator atlas identifies TOX3 as an Atoh1 coactivator in cerebellar development and tumorigenesis 0.09
Deep evolutionary conservation of a sex-determining locus without sequence homology 0.22
HLA-DQB1*03:01 strongly affects age of onset of type 1 narcolepsy independently of DQA1 and ethnicity 0.10
Lipidomic profiling of endometrial cancer using desorption electrospray ionization mass spectrometry imaging 0.07
The Kinship Formula: Inferring the numbers of all kin from any structured population projection model 0.25
Evolution of developmental bias explains divergent patterns of phenotypic evolution in two nematode clades 0.63
Comparative performance of viral landscape phylogeography approaches 0.11
3 1.58
Genome divergence between European anchovy ecotypes fuelled by structural variants originating from trans-equatorial admixture 0.58
Was descent in Neolithic and Bronze Age Europe patrilineal or bilateral? 0.83
Virtual endocast of the Late Miocene Hoplitomeryx matthei (Artiodactyla, Hoplitomerycidae) and brain evolution in insular ruminants. 0.17
2 0.09
<atl>Genomic diversity of the African malaria vector iAnopheles funestus/i</atl> 0.02
The MUC19 gene: An evolutionary history of recurrent introgression and natural selection 0.07
3 1.18
Diverse database and machine learning model to narrow the generalization gap in RNA structure prediction 0.08
Plasticity of ventricle position after heart looping in heterotaxy with right isomerism 1.00
Indirect genetic effects among neighbors promote cooperation and accelerate adaptation in a small-scale human society 0.10
5 3.79
Condensin loop extrusion properties, roadblocks, and role in homology search during recombination in S. cerevisiae 1.00
Direct visualization and tracing of chromatin folding in the Drosophila embryo 0.57
Unique territorial and compartmental organization of chromosomes in the holocentric silkworm 0.30
Epromoters bind key stress-related transcription factors to regulate clusters of stress response genes 0.92
Donor transcription suppresses D-loops in cis and promotes genome stability 1.00
3 1.21
<atl>Gain and loss of gene function shaped the nickel hyperaccumulation trait in iNoccaea caerulescens/i</atl> 0.71
KIL transcription factors facilitate embryo growth in maize by promoting endosperm elimination via lytic cell death 0.37
Reactivation of the tRNASer/tRNATyr gene cluster in Arabidopsis thaliana root tips 0.14

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