Bioinformatics and Computational Biology articles for Fudan University, China

Time frame: 1 June 2025 - 30 May 2026

View topic

Count: 78

Article ‘Count’ for Bioinformatics and Computational Biology.

Journal Count Share
1 0.27
Lung Cancer Cell–Macrophage Interaction System for Signal Pathway-Based Logic Analysis and Drug Testing 0.27
18 9.97
Ribonucleotide-Modified Primer Overlapping Blocker Elongation (PROBE) Assay for Highly Specific Mutation Detection 0.59
FlashMRM: An Automated Platform for MRM Method Generation and Iterative Optimization Based on High-Resolution Spectra 0.31
Multigated DNA Cascade Amplifier for Ultrasensitive Spatiotemporal Imaging of PLS3 mRNA at the Single-Cell Level for Early Detection of Breast Cancer Metastasis 0.14
High Coverage Quantitative Lipidomic Analysis for Multiple Biological Matrices Using Ultrahigh-Performance Liquid-Chromatography and Tandem Mass Spectrometry 0.87
SILICO-MS: Exploring Structural Lipidomic Alterations Using an Ionization-Coupled Ozonolysis Mass Spectrometry Strategy 0.57
Integrative Molecular Pattern Learning for Mental Disorders Via Dual-Effect Matrix-Enabled Multiomics Platform 0.71
Temperature-Responsive Agarose-Based Digital Microfluidics: An In-Chip Sample Preparation To Mass Spectrometry Analysis for Trace Cells and Single-Cell Proteomics 0.10
A GC–MS Data Analysis Platform for Untargeted Metabolomics with Enhanced Coeluting Peak Resolution 0.11
Machine Learning-Driven Extracellular Vesicles Peptidomics Powers Precision Classification of Endometrial Cancer 0.85
A Simple and Flexible Strategy for Single-Cell Proteomic Analysis Based on Protein Immobilization and Digestion Tube Reactor 1.00
Serum Fingerprinting-Based Integrative Dual-Omics Machine Learning for Endometriosis-Associated Ovarian Cancer 1.00
Unsupervised Machine Learning for Differential Analysis in Proteomics 0.70
Hollow Dodecahedral Nanocages for Reliable Multi-Level Differentiation of Urological Cancers through Non-Invasive Metabolic Fingerprinting 0.83
A Chromatography-Guided Co-Fractionation Mass Spectrometry Strategy for Rapid Profiling of Drug-Perturbed Protein Complexes 1.00
Precise Discovery of Novel N-Terminal Proteoforms beyond the Limitations of Proteogenomics and De Novo Sequencing 0.05
Composite Fluorescence Encoding Technology Based on Tetrahedral DNA Framework for Logical Distinction and Multiplexed Recognition 0.05
A New Comprehensive Platform for Profile-Mode-Based Untargeted Metabolomics for Efficient Data Mining to Improve Compound Extraction and Identification 0.08
Developing a Two-Dimensional Size-Exclusion Liquid Chromatography Platform for Isolating the High-Quality Extracellular Vesicles to Predict and Evaluate Metabolic Improvement Outcomes of Sleeve Gastrectomy 1.00
1 0.05
Clinical and Genetic Findings in a Chinese Cohort of Dentatorubral–Pallidoluysian Atrophy Patients 0.05
1 0.05
Spatially informed phenotyping by cyclic-in-situ-hybridisation identifies novel fibroblast populations and their pathogenic niches in systemic sclerosis 0.05
1 0.09
Protein-based classification reveals an immune-hot subtype in IDH mutant astrocytoma with worse prognosis 0.09
3 0.20
Multi-cohort proteogenomic analyses reveal genetic effects across the proteome and diseasome 0.00
Whole-body molecular and cellular mapping of the laboratory mouse 0.09
CLIM-TIME identifies metastatic microenvironment modulators for T cell therapy response 0.11
1 0.07
A generative AI framework unifies human multi-omics to model aging, metabolic health, and intervention response 0.07
1 0.86
A high-throughput N-glycan analysis strategy with targeted mass spectrometry (HTnGQs-target) for liver disease diagnosis 0.86
1 0.46
A pan-genome framework reveals structural variation and small RNA regulation underlying heterodichogamy in Pterocarya 0.46
1 0.69
Urinary Bisphenol A Analogues and Metabolically Unhealthy Obesity in School-Age Children 0.69
1 0.07
Using Environmental Mixture Exposure-Triggered Biological Knowledge-Driven Machine Learning to Predict Early Pregnancy Loss 0.07
1 0.61
Identifying candidate genes for spermatogenic failure and predicting ICSI outcomes using single-cell RNA sequencing and protein–protein interaction networks 0.61
3 2.16
In-Source Photoderivatization-Enhanced Neurometabolic Profiling Deciphers Vascular Cognitive Impairment 0.27
Living Cell Surfacome Lysine Footprinting (LiFT) Captures Virus-Induced Conformational Dynamics and Uncovers Influenza A Virus Host Factors 0.89
A Chemoproteomic Approach for System-Wide and Site-Specific Uncovering of Functional Protein N-Glycosylation 1.00
1 0.01
An integrated view of the structure and function of the human 4D nucleome 0.01
29 9.86
Inferring stochastic dynamics by biophysical Neural ODE using single-cell transcriptomics 0.80
Robust integration of single-cell datasets with imbalanced modality composition 0.10
A metrological foundation for absolute transcriptomics using International System of Units-anchored calibrators 0.12
Branched-chain α-keto acids impair glucose-stimulated insulin secretion in pancreatic β-cells under diabetes by reactivating the LDHA-lactate axis 0.13
A catalogue of early diverged contemporary human genome variation reveals distinct Khoe-San populations 0.03
Analysis of the transcriptomic and metabolomic landscape of prostate cancer with different anatomical origins using snFLARE-seq and mxFRIZNGRND 0.19
Genomic consequences of residual recombination in a hybrid apomictic hickory complex 0.24
Boosting the detection of enhancer-promoter loops via normalization methods for chromatin interaction data 0.83
Essential role of NONO-HOXA1-Wnt axis in cardiomyocyte differentiation 0.78
ProteoAutoNet: high-throughput co-eluted protein analysis with robotics and machine learning 0.05
Genetic insights and mechanistic parallels in gestational diabetes mellitus and type 2 diabetes 0.50
Phylogenomic profile of exon-intron organization across angiosperms, their relationships with protein domains, and functional implications 0.25
VACmap: an accurate long-read aligner for unraveling complex genomic rearrangements 0.22
CellScope: high-performance cell atlas workflow with tree-structured representation 0.07
Distinct immune cell dynamics associated with immune-related adverse events during combined chemoradiation and immune checkpoint inhibitor therapy 0.26
Co-condensation between transcription factor and cBAF selectively modulates chromatin remodeling and gene expression 0.22
The genetic architecture of brainstem structures 0.01
AI-augmented intraoperative decision-making workflows in diffuse midline glioma biopsy using cryosection pathology 0.41
Multi-centric origins and gene flow shape the diversity of β-thalassemia mutations in Southern East Asia 0.13
Protein-level batch-effect correction enhances robustness in MS-based proteomics 0.86
MultiGATE: integrative analysis and regulatory inference in spatial multi-omics data via graph representation learning 0.10
Methylation reference datasets from quartet DNA materials for benchmarking epigenome sequencing 0.41
Combined SNPs sequencing and allele specific proteomics capture reveal functional causality underpinning the 2p25 prostate cancer susceptibility locus 0.58
Conformational plasticity of disordered regions enables sequence-diverse DNA recognition by transcription factor AflR 0.08
Genetic architecture of plasma metabolome in 254,825 individuals 0.97
Identification of multiple genomic alterations and prediction of neoantigens from circulating tumor cells at the single-cell level 0.04
Prioritizing perturbation-responsive gene patterns using interpretable deep learning 1.00
An improved reference library and method for accurate cell-type deconvolution of bulk-tissue miRNA data 0.33
stClinic dissects clinically relevant niches by integrating spatial multi-slice multi-omics data in dynamic graphs 0.16
2 0.37
DECODE: deep learning-based common deconvolution framework for various omics data 0.09
High-parameter spatial multi-omics through histology-anchored integration 0.28
1 0.06
Trans-ancestry genome-wide analyses of bipolar disorder in East Asian and European populations improve genetic discovery 0.06
2 0.35
Interplay between cohesin and RNA polymerase II in regulating chromatin interactions and gene transcription 0.06
Kinetic control of mammalian transcription elongation 0.29
2 0.70
Dissecting spatial patterning and signaling with directional diffusion in spatial multi-omics 0.20
Transcriptional condensates encode a “golden mean” to optimize enhancer–promoter communication across genomic distances 0.50
3 0.12
Mapping transcription factor functions in astrocytes using in vivo gain-of-function Perturb-seq 0.11
Chinese Immune Multi-Omics Atlas 0.01
Stereo-cell: Spatial enhanced-resolution single-cell sequencing with high-density DNA nanoball-patterned arrays 0.01
4 2.01
Cross-trait genomic modeling reveals the polygenic architecture and systemic impact of MASLD 0.65
Introgressed mitochondrial fragments from archaic hominins alter nuclear genome function in modern humans 0.62
Ancient Yellow River ancestry and divergent admixture histories in the Qiang people 0.72
Short tandem repeats in populations of the Qinghai-Tibet Plateau and adjacent regions provide insights into high-altitude adaptation 0.02

Numerical information only (in the tables above) is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International.