Bioinformatics and Computational Biology articles for Max Planck Society, Germany

Time frame: 1 June 2025 - 30 May 2026

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Count: 99

Article ‘Count’ for Bioinformatics and Computational Biology.

Journal Count Share
2 0.03
Exploring the omnigenic architecture of selected complex traits 0.02
Single-cell transcriptome-wide Mendelian randomization and colocalization analyses uncover cell-specific mechanisms in atherosclerotic cardiovascular disease 0.01
2 0.05
xcms in Peak Form: Now Anchoring a Complete Metabolomics Data Preprocessing and Analysis Software Ecosystem 0.01
High-Frequency Microfluidic Fractionation for Compound-Resolved Bioactivity-Based Metabolomics 0.04
1 0.71
Bifunctional Probes Reveal the Rules of Intracellular Ether Lipid Transport 0.71
5 1.02
Multi-cohort proteogenomic analyses reveal genetic effects across the proteome and diseasome 0.00
Complete biosynthesis of nicotine 0.09
Large-scale proteomics across neurological disorders uncovers biomarker panel and targets in multiple sclerosis 0.39
The genetic history of the Southern Caucasus from the Bronze Age to the Early Middle Ages: 5,000 years of genetic continuity despite high mobility 0.43
Denisovan mitochondrial DNA from dental calculus of the >146,000-year-old Harbin cranium 0.11
1 0.00
Genome and Transcriptome-Wide Analyses Identify Multiple Candidate Genes and a Significant Polygenic Contribution in Bicuspid Aortic Valve. 0.00
1 0.79
An early East Asian lineage with unexpectedly low Denisovan ancestry 0.79
1 0.01
Integrative Metabolomics of Targeted and Non-Targeted Analyses in T2D Progression. 0.01
2 0.09
Genetic determinants of childhood blood pressure and heart rate in relation to adult health outcomes: the consortium of childhood blood pressure 0.00
Clonal haematopoiesis of indeterminate potential and mortality in coronary artery disease 0.09
1 0.61
Temporal loss of En1 during limb development causes distinct phenotypes 0.61
1 0.64
Bifunctional Lipid–Protein Cross-linking Efficiency and Reaction Products 0.64
8 0.27
The evolutionary history and unique genetic diversity of Indigenous Americans 0.10
Ancient DNA reveals pervasive directional selection across West Eurasia 0.03
Lasting Lower Rhine–Meuse forager ancestry shaped Bell Beaker expansion 0.03
Mapping the genetic landscape across 14 psychiatric disorders 0.01
A haplotype-based evolutionary history of barley domestication 0.07
Novel assembly of a head–trunk interface in the sister group of jawed vertebrates 0.03
Structural variation in 1,019 diverse humans based on long-read sequencing 0.00
A haplotype-resolved pangenome of the barley wild relative 0.00
1 0.91
AlphaDIA enables DIA transfer learning for feature-free proteomics 0.91
2 0.74
Visualizing suborganellar lipid distribution using correlative light and electron microscopy 0.64
Lineage-determining transcription factors constrain cohesin to drive multi-enhancer oncogene regulation 0.10
33 7.42
Continental-scale genomic surveillance of Plasmodium falciparum malaria across sub-Saharan Africa with rapid nanopore sequencing 0.13
Horizontal gene transfer and diploidy illuminate evolution and stress adaptation in oleaginous Scenedesmaceae (Chlorophyta) 0.11
The adaptive molecular landscape of reprogrammed telomeric sequences 0.02
Transcriptional competence defines the heterochromatin nucleating potential of isolated MSR units 0.75
An international multi-centre study to develop and validate federated learning-based prognostic models for anal cancer 0.00
Regionalized regulation of actomyosin organization influences cardiomyocyte cell shape changes during chamber curvature formation 0.40
Cell type-specific epigenetic regulatory circuitry of coronary artery disease loci 0.07
Mechanisms of gene regulation by SRCAP and H2A.Z 0.06
Adgrg6/Gpr126 is required for compact wall integrity and establishing trabecular identity during cardiac trabeculation 0.40
Crowdsourced biodiversity monitoring fills gaps in global plant trait mapping 0.02
An adaptive, continuous-learning framework for clinical decision-making from proteome-wide biofluid data 0.69
The Knowledge Connector decision support system for multiomics-based precision oncology 0.01
The Camellia sinensis var. sinensis cv. Fuding Dabaicha genome unveils structural variation-driven metabolic innovation 0.10
Structure of the Methanosarcina mazei Mtr complex bound to the oxygen-stress responsive small protein MtrI 0.33
Cross-platform clinical proteomics using the Charité open standard for plasma proteomics (OSPP) 0.01
Complex genetic effects linked to plasma protein abundance in the UK Biobank 0.03
Repurposing clinically safe drugs for DNA repair pathway choice in CRISPR genome editing and synthetic lethality 1.00
Acquisition of ampliconic sequences marks a selfish mouse -haplotype 0.50
Domestication shaped the chromatin landscape of grain amaranth 0.06
Multi-centric origins and gene flow shape the diversity of β-thalassemia mutations in Southern East Asia 0.03
Differential conformational expansion of NUP98-HOXA9 oncoprotein from nanosized assemblies to macrophases 0.25
AI-powered spatial cell phenomics enhances risk stratification in non-small cell lung cancer 0.01
Endothelial RNF20 suppresses endothelial-to-mesenchymal transition and safeguards physiological angiocrine signaling to prevent congenital heart disease 0.10
Conformational plasticity of disordered regions enables sequence-diverse DNA recognition by transcription factor AflR 0.08
Trans-eQTL mapping prioritises USP18 as a negative regulator of interferon response at a lupus risk locus 0.00
: AI generation of multiplex immunofluorescence staining from histopathology images 0.01
Enhancing tandem mass spectrometry-based metabolite annotation with online chemical labeling 0.05
Nanoscale 3D DNA tracing in non-denatured cells resolves the Cohesin-dependent loop architecture of the genome in situ 0.09
Single nucleosome imaging reveals principles of transient multiscale chromatin reorganization triggered by histone ADP-ribosylation at DNA lesions 0.04
Forced expression of MSR repeat transcripts above a threshold limit breaks heterochromatin organisation 1.00
MR-link-2: pleiotropy robust Mendelian randomization validated in three independent reference datasets of causality 0.00
ETMR stem-like state and chemo-resistance are supported by perivascular cells at single-cell resolution 0.05
Maximizing meiotic crossover rates reveals the map of Crossover Potential 1.00
7 1.43
Histone acetylation-dependent clustering of BRD2 instructs transcription dynamics 0.79
Linking the plasma proteome to genetics in individuals from continental Africa provides insights into type 2 diabetes pathogenesis 0.00
Genomic and transcriptomic analyses of aortic stenosis enhance therapeutic target discovery and disease prediction 0.00
Nucleotide dependency analysis of genomic language models detects functional elements 0.06
Genome-wide association meta-analysis of childhood ADHD symptoms and diagnosis identifies new loci and potential effector genes 0.00
A comparison of 27 Arabidopsis thaliana genomes and the path toward an unbiased characterization of genetic polymorphism 0.46
Genetic variation at transcription factor binding sites largely explains phenotypic heritability in maize 0.10
1 0.00
Polygenic prediction of body mass index and obesity through the life course and across ancestries 0.00
6 0.28
Differentiation of sphingomyelin and cholesterol by hyperspectral mid-infrared detection of single-bond vibrational modes in the fingerprint region 0.01
Inferring cell differentiation maps from lineage tracing data 0.13
C-COMPASS: a user-friendly neural network tool profiles cell compartments at protein and lipid levels 0.08
Helixer: ab initio prediction of primary eukaryotic gene models combining deep learning and a hidden Markov model 0.06
Nicheformer: a foundation model for single-cell and spatial omics 0.00
Functional phenotyping of genomic variants using joint multiomic single-cell DNA–RNA sequencing 0.01
1 0.00
Fine-mapping genomic loci refines bipolar disorder risk genes 0.00
2 1.01
Integrated MINFLUX tracking reveals two distinct chromatin dynamics classes across cell types 0.14
Reporter CRISPR screens decipher cis-regulatory and trans-regulatory principles at the Xist locus 0.88
1 0.06
Epigenome profiling identifies H3K27me3 regulation of extracellular matrix composition in human corticogenesis 0.06
1 0.01
Systematic screen uncovers regulator contributions to chemical cues in Escherichia coli 0.01
2 1.86
Epigenetic gene regulation is controlled by distinct regulatory complexes utilizing specialized paralogs of TELOMERE REPEAT BINDING FACTORS 1.00
Genetic underpinnings of chills from art and music 0.86
7 2.59
Sperm, egg, and embryo proteins critical for genetic adaptation of herring to low salinity in the Baltic Sea 0.24
Archaeogenetic insights into the demographic history of Late Neanderthals 0.06
Convergent evolution increases boron transport through SNPs and tandem duplications at BOR1 and BOR2 in Arabidopsis thaliana 0.58
A high-coverage Neandertal genome from the Altai Mountains reveals population structure among Neandertals 0.55
Deep evolutionary conservation of a sex-determining locus without sequence homology 0.11
Single-cell metabolome and RNA-seq multiplexing on single plant cells 1.00
Genome analyses suggest recent speciation and postglacial isolation in the Norwegian lemming 0.05
3 0.12
The evolution of gene regulation in mammalian cerebellum development 0.02
Multiscale structure of chromatin condensates explains phase separation and material properties 0.05
A genome-to-proteome map reveals how natural variants drive proteome diversity and shape fitness 0.06
5 2.06
Stage-specific epigenetic priming amplifies gene activation during lineage commitment 0.91
Evaluating the effects of archaic protein-altering variants in living human adults 0.89
Dynamic human admixture histories over the past ~1300 years at the northern Himalayan frontier 0.02
Soma-derived 30-nt small RNAs are coupled with chromosome breakage and precisely target nontransposon DNA against elimination in Euplotes vannus 0.14
Indirect genetic effects among neighbors promote cooperation and accelerate adaptation in a small-scale human society 0.10
2 1.22
Strain-level diversity of giant viruses infecting chlorarachniophyte algae in the subtropical North Pacific 0.62
Redox gradients define the ecological niche of ciliates with denitrifying endosymbionts in anoxic lake waters 0.60

Numerical information only (in the tables above) is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International.