Bioinformatics and Computational Biology articles for Zhejiang University (ZJU), China

Time frame: 1 June 2025 - 30 May 2026

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Count: 74

Article ‘Count’ for Bioinformatics and Computational Biology.

Journal Count Share
8 3.66
Simultaneous In-Depth Single-Cell Proteomic and Metabolomic Analysis 0.58
SIBioX: A Matrix Based Bioinformatics Analysis Tool Based on Swarm Intelligence Algorithm 0.08
A Highly Sensitive and High-Throughput Quantitative HILIC-MS/MS Method for Systematic Profiling of RNA Modifications 1.00
Extreme Ultraviolet Photodissociation Decodes the Chain Modifications of Lipids 0.12
An Analytical Strategy for Reliable Metabolome Analysis of Clinical Leftover Sera Using Timed Aliquoting 0.38
Tailored SONAR-MSI: Converting SONAR-MS Data into Pseudoimages for Deep-Learning-Based Natural Products Analysis 0.54
CRB-FCC: A Standardized Nontargeted Analysis for Formula Assignment and Structure Annotation 0.08
Integrated Single-Cell Proteomic and Morphometric Analysis Reveals Heterogeneous Drug-Resistant Subpopulations 0.88
1 0.07
Clinical and Genetic Findings in a Chinese Cohort of Dentatorubral–Pallidoluysian Atrophy Patients 0.07
1 0.02
Genome-wide association studies reveal new insights into the genetic basis of IgG4-related disease in the Chinese Han population 0.02
1 0.92
Identification of Novel Noncoding Genetic Variants of Serum Urate Using Whole‐Genome Sequencing in 7,339 Chinese Participants 0.92
1 0.86
Heterogeneous Driving Effects Guide Personalized Tumor Treatments Targeting N6-methyladenosine 0.86
2 1.03
Complete biosynthesis of nicotine 0.03
Modeling the vertebrate regulatory sequence landscape by UUATAC-seq and deep learning 1.00
1 0.84
SPTEdU-seq enables parallel optics-free newborn cell tracking and spatial total transcriptional dynamics in intact microenvironments 0.84
1 0.01
High-throughput Proteomics in Lymphangioleiomyomatosis: PMEL as a Diagnostic Biomarker, Construction of a Diagnosis Score and Evidence of Neutrophil Involvement. 0.01
1 0.19
Homologous Gene Analysis Reveals ACR3 Expansion as a Key Driver of Arsenic Hyperaccumulation in Plants 0.19
2 1.38
Simultaneous modeling of chromatin conformation changes from multiple single-cell interaction maps with ChromMovie 0.50
k-mer cross-species profiling reveals taxon-specific TE expansions accompanied by KZFP co-option and functional impacts in ruminants 0.88
2 0.28
Living Cell Surfacome Lysine Footprinting (LiFT) Captures Virus-Induced Conformational Dynamics and Uncovers Influenza A Virus Host Factors 0.11
NRPStransformer, an Accurate Adenylation Domain Specificity Prediction Algorithm for Genome Mining of Nonribosomal Peptides 0.17
1 0.58
Cross-ancestry genetic architecture reveals shared biological pathways of major psychiatric disorders 0.58
3 0.03
An integrated view of the structure and function of the human 4D nucleome 0.02
Mouse lemur cell atlas informs primate genes, physiology and disease 0.01
A molecular cell atlas of mouse lemur, an emerging model primate 0.01
1 0.18
Scalable homology detection with ERAST 0.18
28 7.27
Engineering yeast chromosomal telomeres with a bacteriophage system 0.03
Inherent MS-cleavability of diazirine photo-cross-links enables residue-level structural analysis 0.13
A long-read human pangenome initiative for comprehensive interpretation of nuclear-embedded mitochondrial DNA 0.17
Learning the PTM code through a coarse-to-fine mechanism-aware framework 0.09
UK BioCoin: swift trait-specific summary statistics regression for UK Biobank 0.21
Illuminating cell states by a comprehensive and interpretable single cell foundation model 0.25
Branched-chain α-keto acids impair glucose-stimulated insulin secretion in pancreatic β-cells under diabetes by reactivating the LDHA-lactate axis 0.03
Enhancing microbial metabolic capacity through high-energy electron beam-induced intense structural variations 0.35
genome analyses indicate introgression may drive local adaptation and herbicide resistance 0.53
TidyMass2: advancing LC-MS untargeted metabolomics through metabolite origin inference and metabolic feature-based functional module analysis 0.13
Genomic dissection of the clonal background and global dissemination of hypervirulent CG23-KL57 lineage 0.53
DNA actively regulates the “safety-belt” dynamics of condensin during loop extrusion 0.25
A multimodal knowledge-enhanced whole-slide pathology foundation model 0.05
Co-condensation between transcription factor and cBAF selectively modulates chromatin remodeling and gene expression 0.28
Transformer-based deep learning enhances discovery in migraine GWAS 0.13
The genetic architecture of brainstem structures 0.02
Benchmarking pre-trained genomic language models for RNA sequence-related predictive applications 0.67
Near complete assembly of Drosophila melanogaster Canton S strain genome 0.06
Deciphering gene redundancy in prokaryotic genomes provides evolutionary insights for pathogenicity and its roles in clinical infections 0.27
Impact of common variants on brain gene expression from RNA to protein to schizophrenia risk 0.02
Deriving consensus sepsis clusters via goal-directed subgroup identification in multi-omics study 0.17
Benchmarking informatics workflows for data-independent acquisition single-cell proteomics 0.73
Omnireg-gpt: a high-efficiency foundation model for comprehensive genomic sequence understanding 0.79
Image-based DNA sequencing encoding for detecting low-mosaicism somatic mobile element insertions 0.11
Integrating cross-sample and cross-modal data for spatial transcriptomics and metabolomics with SpatialMETA 0.45
Non-coding genetic elements of lung cancer identified using whole genome sequencing in 13,722 Chinese 0.68
PhyloTune: An efficient method to accelerate phylogenetic updates using a pretrained DNA language model 0.11
cTAGE5 is essential for adipogenesis and adipose tissue development 0.04
2 0.58
Genetic diversity and evolution of rice centromeres 0.50
A multi-tissue single-cell expression atlas in cattle 0.08
1 0.06
Direct RNA sequencing and signal alignment reveal RNA structure ensembles in a eukaryotic cell 0.06
1 0.05
Trans-ancestry genome-wide analyses of bipolar disorder in East Asian and European populations improve genetic discovery 0.05
1 0.03
Interplay between cohesin and RNA polymerase II in regulating chromatin interactions and gene transcription 0.03
1 0.05
Cell2Spatial is a computational framework that maps single cells to spatial transcriptomic spots to reconstruct tissue architecture 0.05
1 0.03
Machine learning identifies novel signatures of antifungal drug resistance in Saccharomycotina yeasts 0.03
2 0.95
A large-scale gene regulatory network for rice endosperm starch biosynthesis and its application in genetic improvement of rice quality 0.45
A MYB61-SWB9-KOs module regulates grain chalkiness via gibberellin biosynthesis in rice endosperm 0.50
4 1.06
Microhomology-mediated tandem duplication is a conserved mechanism of genomic variation with implications for human disease 0.88
Deep evolutionary conservation of a sex-determining locus without sequence homology 0.06
HLA-DQB1*03:01 strongly affects age of onset of type 1 narcolepsy independently of DQA1 and ethnicity 0.05
Convergent expansions of keystone gene families drive metabolic innovation in Saccharomycotina yeasts 0.08
4 0.07
Gapless pangenome analyses reveal fast Brassica rapa subspeciation 0.03
Chinese Immune Multi-Omics Atlas 0.00
Stereo-cell: Spatial enhanced-resolution single-cell sequencing with high-density DNA nanoball-patterned arrays 0.02
Origins and diversity of Greenland’s Qimmit revealed with genomes of ancient and modern sled dogs 0.02
2 0.07
Introgressed mitochondrial fragments from archaic hominins alter nuclear genome function in modern humans 0.06
An ancient genome duplication event drives the development and evolution of spinnerets in spiders 0.01
1 0.34
Structure-guided discovery of protein functions in plants 0.34

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