Genetic Relatedness Analysis in Natural Populations

Summary

Genetic relatedness analysis quantifies the degree of shared ancestry among individuals within and between populations by measuring how alleles are inherited from common forebears. Historically rooted in pedigree assessment, modern approaches employ molecular markers such as microsatellites and single nucleotide polymorphisms to infer kinship, inbreeding and identity-by-descent from genome-wide data. These metrics illuminate social structure, mating systems and dispersal, inform conservation strategies by identifying units for management, and underpin studies of quantitative trait heritability and disease susceptibility. High-resolution estimates of relatedness support close-kin mark–recapture techniques to gauge population size and demographic trends, and enhance statistical models of population structure by refining genetic relationship matrices. Advances in sequencing and computational methods have driven a shift towards probabilistic models that accommodate inbreeding, admixture and marker heterogeneity, enabling accurate estimation of pairwise kinship in wild and fragmented populations. Such insights are crucial to safeguard genetic diversity, guide restoration programmes and predict adaptive potential under environmental change.

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Genetic Relatedness Analysis in Natural Populations publication trend

The graph below shows the total number of articles in genetic relatedness analysis in natural populations across all publications each year (not limited to Nature Index journals).

Technical terms

Kinship coefficient: Probability that alleles sampled from two individuals are identical-by-descent.

Inbreeding coefficient: Probability that two alleles within an individual are identical-by-descent.

Identity-by-descent (IBD): Alleles shared by individuals due to inheritance from a common ancestor.

Effective population size (Ne): The size of an idealised population that experiences genetic drift at the same rate as the actual population.

Close-kin mark–recapture (CKMR): A genetic method using observed related pairs to estimate population size and demography.

Single nucleotide polymorphism (SNP): A genomic locus at which individuals differ by a single base-pair.

Jacquard genetic identity coefficients: Probabilities of each possible allele-sharing state between two individuals at a locus.

References

  1. Estimation of inbreeding and kinship coefficients via latent identity-by-descent states. Bioinformatics (2024).
  2. Estimating effective population size using close‐kin mark–recapture. Methods in Ecology and Evolution (2024).
  3. Estimation of Jacquard’s genetic identity coefficients with bi-allelic variants by constrained least-squares. Heredity (2024).

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