Summary

Radical chemistry in nucleic acid systems encompasses the formation, reactivity and repair of species bearing unpaired electrons within DNA and RNA. Such radicals may arise through endogenous processes—such as mitochondrial respiration and enzymatic oxidations—or via exogenous insults including ionising radiation and photochemical activation. Central to this field is the study of hydroxyl, superoxide and nucleobase-centred radicals, whose interactions with sugar, phosphate and base moieties can induce strand breaks, base modifications and crosslinks. Mechanistic investigations employ spectroscopic tools (pulse radiolysis, infrared photodissociation), mass spectrometry and quantum-chemical calculations to delineate pathways of hydrogen abstraction, addition to unsaturated bonds and radical cation fragmentation. Insights into the energetics of these processes inform our understanding of oxidative DNA damage, mutagenesis and the molecular basis of ageing. Moreover, controlled radical chemistry underpins emerging biotechnological applications such as site-specific labelling, photorepair by photolyases and development of novel phototherapeutic agents. Advances in computational modelling now allow for explicit treatment of solvent effects and anharmonic vibrations, refining predictions of rate constants and preferred reaction channels. Collectively, this body of work reveals the delicate balance of radical generation and scavenging that sustains genomic integrity and offers routes to manipulate nucleic acid function for therapeutic benefit.

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Radical Chemistry in Nucleic Acid Systems publication trend

The graph below shows the total number of articles in radical chemistry in nucleic acid systems across all publications each year (not limited to Nature Index journals).

Technical terms

Radical: A species containing one or more unpaired electrons, often highly reactive.

Radical cation: A positively charged radical formed by loss of an electron.

Hydrogen abstraction: A reaction in which a radical removes a hydrogen atom from a target molecule, generating a new radical site.

Anharmonicity: Deviation of molecular vibrations from the ideal harmonic oscillator model, affecting energy levels and reaction barriers.

Polarizable continuum model (PCM): A computational approach representing solvent as a continuous dielectric medium around a solute.

References

  1. A Theoretical Study of Hydrogen Abstraction Reactions in Guanosine and Uridine. International Journal of Molecular Sciences (2023).
  2. The Importance of Anharmonicity and Solvent Effects on the OH Radical Attack on Nucleobases. International Journal of Molecular Sciences (2024).

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