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Showing 1–50 of 146 results
Advanced filters: Author: Benjamin C. K. Tee Clear advanced filters
  • Electrochemical acid-base production has attractive applications in mineral recovery and CO2 removal, but current membrane-based designs are plagued by resistive losses. The authors report a membrane-less system generating useful acid and base solutions at high rates with less energy.

    • Benjamin P. Charnay
    • Yuxuan Chen
    • Matthew W. Kanan
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • In a short-term study in which hearts from gene-edited pigs were transplanted into two recently deceased human recipients, the hearts were able to function for the duration of the study without signs of rejection and without evidence of pig virus transmission, encouraging further clinical study of cardiac xenotransplantation.

    • Nader Moazami
    • Jeffrey M. Stern
    • Robert A. Montgomery
    Research
    Nature Medicine
    Volume: 29, P: 1989-1997
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • Lactation is essential, but its genetic and epigenetic regulation is poorly understood. Here, Hanin et al. show that ZFP57 has an imprinting-independent role in controlling postnatal nutritional support, expanding its known prenatal epigenetic functions.

    • Geula Hanin
    • Boshra AlSulaiti
    • Anne C. Ferguson-Smith
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-15
  • Thermoelectric materials can convert temperature gradients into electrical potential; however, traditional materials have unfavorable mechanical, optical, and electrical properties for devices. Here, the authors design an ionic hydrogel system optimizing these properties for human-machine interface devices.

    • Jingyi Yang
    • Zifeng Wang
    • Benjamin C. K. Tee
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • Plasmid-mediated transmission plays a significant role in the spread of carbapenem-resistant Enterobacterales. Here, analyzing 1,115 carbapenemase-producing plasmids from Singapore, the authors suggest that maintenance of conserved genomes adapted for stable propagation across multiple species, enables evolutionarily successful carbapenemase plasmid genotypes to achieve hyperendemicity in the population.

    • Vanessa Koh
    • Rodrigo Cabrera
    • Oon Tek Ng
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

    • Marta Paczkowska
    • Jonathan Barenboim
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • Flexible organic electronics could eventually be used to create electronic skin. Films of a pressure-sensitive microstructured elastomer are now used as the dielectric layer in organic field-effect transistors to create highly sensitive devices. The elastomer is also used in a matrix pressure sensor that can detect loads in numerous positions.

    • Stefan C. B. Mannsfeld
    • Benjamin C-K. Tee
    • Zhenan Bao
    Research
    Nature Materials
    Volume: 9, P: 859-864
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • The authors demonstrate a widely tunable dual-comb optical parametric oscillator in the mid-infrared, and combine it with an intra-cavity up-conversion detection scheme to obtain high-sensitivity and high-resolution spectroscopy measurements.

    • Carolin P. Bauer
    • Zofia A. Bejm
    • Christopher R. Phillips
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • In situ methods for water quality monitoring is crucial for global water use and management, though many conventional sensors have slow response time and are non-recyclable. Here, the authors report a recyclable amphiphobic dielectric material for fast monitoring of water pollutants.

    • Mengmeng Liu
    • Hongchen Guo
    • Benjamin C. K. Tee
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • Humanity’s Last Exam, a multi-modal benchmark at the frontier of human knowledge, is designed to be an expert-level closed-ended academic benchmark with broad subject coverage.

    • Long Phan
    • Alice Gatti
    • Davide Scaramuzza
    ResearchOpen Access
    Nature
    Volume: 649, P: 1139-1146
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Federated ML (FL) provides an alternative to train accurate and generalizable ML models, by only sharing numerical model updates. Here, the authors present the largest FL study to-date to generate an automatic tumor boundary detector for glioblastoma.

    • Sarthak Pati
    • Ujjwal Baid
    • Spyridon Bakas
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-17
  • Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

    • Moritz Gerstung
    • Clemency Jolly
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 122-128
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • A device architecture based on indium arsenide–aluminium heterostructures with a gate-defined superconducting nanowire allows single-shot interferometric measurement of fermion parity and demonstrates an assignment error probability of 1%.

    • Morteza Aghaee
    • Alejandro Alcaraz Ramirez
    • Justin Zilke
    ResearchOpen Access
    Nature
    Volume: 638, P: 651-655
  • Alternating-current electroluminescent fibres hold promise as light sources for smart textiles and soft machines, yet they suffer from low durability and stability. Here, the authors report a bright, durable electroluminescent fibre that recovers from severing damage and remains stable for months, with omnidirectional magnetic actuation.

    • Xuemei Fu
    • Guanxiang Wan
    • Benjamin C. K. Tee
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-10
  • Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

    • Yulia Rubanova
    • Ruian Shi
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Insufficient electron injection remains a limiting factor for the performance of stretchable organic light-emitting diodes. Here designs for both electron transport layer and cathode in stretchable organic light-emitting diodes are reported to achieve efficient electron injection.

    • Wei Liu
    • Cheng Zhang
    • Sihong Wang
    Research
    Nature Materials
    Volume: 25, P: 472-480
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Inbreeding depression has been observed in many different species, but in humans a systematic analysis has been difficult so far. Here, analysing more than 1.3 million individuals, the authors show that a genomic inbreeding coefficient (FROH) is associated with disadvantageous outcomes in 32 out of 100 traits tested.

    • David W Clark
    • Yukinori Okada
    • James F Wilson
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-17
  • Solid-state pressure sensors have performance limitations in liquid environments. Here, the authors design a pressure sensor using solid–liquid–liquid–gas multiphasic interfaces where a trapped air layer modulates capacitance changes with pressure to achieve near-friction-free contact line motions for near-ideal pressure sensing.

    • Wen Cheng
    • Xinyu Wang
    • Benjamin C. K. Tee
    Research
    Nature Materials
    Volume: 22, P: 1352-1360
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

    • Yiqun Zhang
    • Fengju Chen
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Silicon microring resonator plays crucial role in optical computing owing to the compact footprint and energy-efficiency, yet existing modulators require >2 V to drive it. Here, the authors present a solution to this by using metal-oxide-semiconductor capacitor microring that brings down the driving voltage to 0.8 V.

    • Wei-Che Hsu
    • Nabila Nujhat
    • Alan X. Wang
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-9
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330
  • Some cancer patients first present with metastases where the location of the primary is unidentified; these are difficult to treat. In this study, using machine learning, the authors develop a method to determine the tissue of origin of a cancer based on whole sequencing data.

    • Wei Jiao
    • Gurnit Atwal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Carbapenemase-producing Enterobacterales cause healthcare-associated infections but modes of transmission are not well understood. Here, the authors find evidence of transmission without direct patient contact, indicating presence of undetected environmental reservoirs, whilst half of the transmission events are likely due to plasmid-mediated transmission.

    • Kalisvar Marimuthu
    • Indumathi Venkatachalam
    • Oon Tek Ng
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-11
  • A textile metamaterial sensor can wirelessly measure biomarkers—such as heart rate and respiration—in vehicles and shows no accuracy degradation when operating in moving environments.

    • Qihang Zeng
    • Xi Tian
    • John S. Ho
    Research
    Nature Electronics
    Volume: 7, P: 1025-1034
  • Designing mechanosensory system that detects mechanical contact forces like human skin remains a challenge. Here, the authors present artificially innervated self-healing foams by embedding 3D electrodes for piezo-impedance sensors that can operate in both piezoresistive and piezocapacitive sensing modes to address various proximity and mechanical interactions efficiently.

    • Hongchen Guo
    • Yu Jun Tan
    • Benjamin C. K. Tee
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • Luis PĂ©rez-Jurado, Stephen Chanock and colleagues detect clonal chromosomal abnormalities in peripheral blood or buccal samples from individuals in the general population. They show that the frequency of such events increases with age and is associated with elevated risk of developing subsequent hematological cancers.

    • Kevin B Jacobs
    • Meredith Yeager
    • Stephen J Chanock
    Research
    Nature Genetics
    Volume: 44, P: 651-658
  • Reduced glomerular filtration rate (eGFR) is a hallmark of chronic kidney disease. Here, Pattaro et al. conduct a meta-analysis to discover several new loci associated with variation in eGFR and find that genes associated with eGFR loci often encode proteins potentially related to kidney development.

    • Cristian Pattaro
    • Alexander Teumer
    • Caroline S. Fox
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-19
  • Transcriptional dysregulation contributes to tumor progression. Here the authors show that transcriptional complex NELF interacts with SLUG, and co-opts KAT2B, to promote the expression of epithelial-mesenchymal transition (EMT) and stemness-associated genes in breast cancer.

    • Jieqiong Zhang
    • Zhenhua Hu
    • Wee-Wei Tee
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-21