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Showing 1–50 of 89 results
Advanced filters: Author: Gareth S. Collins Clear advanced filters
  • An analysis of 24,202 critical cases of COVID-19 identifies potentially druggable targets in inflammatory signalling (JAK1), monocyte–macrophage activation and endothelial permeability (PDE4A), immunometabolism (SLC2A5 and AK5), and host factors required for viral entry and replication (TMPRSS2 and RAB2A).

    • Erola Pairo-Castineira
    • Konrad Rawlik
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 617, P: 764-768
  • DNA-sequencing data from primary tumours and paired metastases from participants in the TRACERx lung study and PEACE autopsy programme are used to analyse the metastatic diversity of advanced non-small cell lung cancer and the seeding patterns that underpin it.

    • Sonya Hessey
    • Abigail Bunkum
    • Mariam Jamal-Hanjani
    ResearchOpen Access
    Nature
    Volume: 653, P: 911-922
  • The Schrödinger impact event carved two canyons on the moon comparable in size to the Grand Canyon of North America. The directions of those canyons imply little debris covers the > 4-billion-year-old units that will be explored by Artemis astronauts.

    • David A. Kring
    • Danielle P. Kallenborn
    • Gareth S. Collins
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-7
  • The potential roles of viruses in microbial-induced permafrost thaw, which is accelerated by climate change, are unclear. Here, Trubl et al. sample a permafrost thaw gradient and identify thousands of new viruses carrying genes with metabolic-related functions, which might influence the fate of stored carbon.

    • Gareth Trubl
    • Simon Roux
    • Virginia I. Rich
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-15
  • Radioisotopic age constraints and numerical simulations on the duration of hydrothermal activity associated with the Chicxulub impact structure indicate the system was active for 8 million years, four times longer than previous estimates

    • Annemarie E. Pickersgill
    • Evangelos Christou
    • Darren F. Mark
    ResearchOpen Access
    Communications Earth & Environment
    Volume: 7, P: 1-12
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477
  • Whole-genome sequencing, transcriptome-wide association and fine-mapping analyses in over 7,000 individuals with critical COVID-19 are used to identify 16 independent variants that are associated with severe illness in COVID-19.

    • Athanasios Kousathanas
    • Erola Pairo-Castineira
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 607, P: 97-103
  • Large impacts can create deep lying porosity far away from the crater. This result explains GRAIL’s findings and suggests impacts could support widespread fluid circulation, which has implications for habitable environments on early Earth and Mars.

    • Sean E. Wiggins
    • Brandon C. Johnson
    • Simone Marchi
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-6
  • Combining high-resolution mapping of foliar and herbivore faecal sodium concentrations across Africa, the authors show that plant-derived sodium availability constrains megaherbivore densities at a continental scale.

    • Andrew J. Abraham
    • Gareth P. Hempson
    • Christopher E. Doughty
    Research
    Nature Ecology & Evolution
    Volume: 10, P: 105-116
  • An improved, fully re-annotated Aedes aegypti genome assembly (AaegL5) provides insights into the sex-determining M locus, chemosensory systems that help mosquitoes to hunt humans and loci involved in insecticide resistance and will help to generate intervention strategies to fight this deadly disease vector.

    • Benjamin J. Matthews
    • Olga Dudchenko
    • Leslie B. Vosshall
    ResearchOpen Access
    Nature
    Volume: 563, P: 501-507
  • The origins of Silverpit Crater have remained controversial since its discovery >20 years ago. This paper presents evidence for an extraterrestrial impact origin, including 3D seismic, computer simulations and ‘shocked’ minerals near the crater.

    • Uisdean Nicholson
    • Iain de Jonge-Anderson
    • Ronnie Parr
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • As the Perseverance rover landed on the Martian surface, the sensors on NASA’s InSight Mars lander picked up no seismic or acoustic waves. This non-detection provides information on the crust and atmosphere of Mars.

    • Benjamin Fernando
    • Natalia Wójcicka
    • Ingrid J. Daubar
    ResearchOpen Access
    Nature Astronomy
    Volume: 6, P: 59-64
  • Goal directed behavior requires the sequential retrieval and evaluation of the multiple choices for action and their deterministic outcomes. Here, the authors report sequential, decodable probabilistic outcome representations in magnetoencephalography (MEG) signals during a risky foraging task.

    • Giuseppe Castegnetti
    • Athina Tzovara
    • Dominik R. Bach
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-11
  • Due to its strong gravity, Ceres’ surface still retains evidence of past collisions, which have been lost via impact-driven oxidation of organic material from typical C-rich asteroids, according to impact experiments

    • Kosuke Kurosawa
    • Gareth S. Collins
    • Takafumi Matsui
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-8
  • Whole-genome sequencing analysis of individuals with primary immunodeficiency identifies new candidate disease-associated genes and shows how the interplay between genetic variants can explain the variable penetrance and complexity of the disease.

    • James E. D. Thaventhiran
    • Hana Lango Allen
    • Kenneth G. C. Smith
    Research
    Nature
    Volume: 583, P: 90-95
  • Phylogenomic analysis of 7,923 angiosperm species using a standardized set of 353 nuclear genes produced an angiosperm tree of life dated with 200 fossil calibrations, providing key insights into evolutionary relationships and diversification.

    • Alexandre R. Zuntini
    • Tom Carruthers
    • William J. Baker
    ResearchOpen Access
    Nature
    Volume: 629, P: 843-850
  • Double Asteroid Redirection Test (DART) mission impact on asteroid Dimophos resulted in an elliptical ejecta plume. Here, the authors show that this elliptical ejecta is due to the curvature of the asteroid and makes kinetic momentum transfer less efficient.

    • Masatoshi Hirabayashi
    • Sabina D. Raducan
    • Timothy J. Stubbs
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • A subset of seismic events recorded by InSight’s seismometer attributed to impacts was used to derive a new estimate of the current impact rate on Mars. The results suggest a rate higher than predicted by orbital imaging, but consistent with theoretical rates.

    • Géraldine Zenhäusern
    • Natalia Wójcicka
    • Domenico Giardini
    ResearchOpen Access
    Nature Astronomy
    Volume: 8, P: 1138-1147
  • THOC2 is an essential subunit of Transcription mRNA Export complex of eukaryotic cells and its compromise causes adverse (neuro)development. Using mouse model and patient cells the authors unravel molecular pathology of the syndrome, from R-loops dysregulation, to altered transcriptome and DNA damage triggered cell death.

    • Rudrarup Bhattacharjee
    • Lachlan A. Jolly
    • Jozef Gecz
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-25
  • The twin isotopic signatures of the Moon and Earth are difficult to explain by a single giant impact. Impact simulations suggest that making the Moon by a combination of multiple, smaller moonlet-forming impacts may work better.

    • Gareth S. Collins
    News & Views
    Nature Geoscience
    Volume: 10, P: 72-73
  • In this study, Aggarwal and colleagues perform prospective sequencing of SARS-CoV-2 isolates derived from asymptomatic student screening and symptomatic testing of students and staff at the University of Cambridge. They identify important factors that contributed to within university transmission and onward spread into the wider community.

    • Dinesh Aggarwal
    • Ben Warne
    • Ian G. Goodfellow
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-16
  • Post-international travel quarantine has been widely implemented to mitigate SARS-CoV-2 transmission, but the impacts of such policies are unclear. Here, the authors used linked genomic and contact tracing data to assess the impacts of a 14-day quarantine on return to England in summer 2020.

    • Dinesh Aggarwal
    • Andrew J. Page
    • Ewan M. Harrison
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-13
  • Results of the TRACERx study shed new light into the association between body composition and body weight with survival in individuals with non-small cell lung cancer, and delineate potential biological processes and mediators contributing to the development of cancer-associated cachexia.

    • Othman Al-Sawaf
    • Jakob Weiss
    • Charles Swanton
    Research
    Nature Medicine
    Volume: 29, P: 846-858
  • The authors report on a determination of the momentum transferred to an asteroid by kinetic impact, showing that the DART kinetic impact was highly effective in deflecting the asteroid Dimorphos.

    • Andrew F. Cheng
    • Harrison F. Agrusa
    • Giovanni Zanotti
    ResearchOpen Access
    Nature
    Volume: 616, P: 457-460
  • Upstream open reading frames (uORFs), located in 5’ untranslated regions, are regulators of downstream protein translation. Here, Whiffin et al. use the genomes of 15,708 individuals in the Genome Aggregation Database (gnomAD) to systematically assess the deleteriousness of variants creating or disrupting uORFs.

    • Nicola Whiffin
    • Konrad J. Karczewski
    • James S. Ware
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • The impact of the DART spacecraft on the asteroid Dimorphos is reported and reconstructed, demonstrating that kinetic impactor technology is a viable technique to potentially defend Earth from asteroids.

    • R. Terik Daly
    • Carolyn M. Ernst
    • Yun Zhang
    ResearchOpen Access
    Nature
    Volume: 616, P: 443-447
  • Patient-derived xenografts are important tools for cancer drug development. Here, the authors develop models from 22 non-small cell lung cancer patients. They show genomic differences between models created from different spatial regions of tumours and a bottleneck on model establishment.

    • Robert E. Hynds
    • Ariana Huebner
    • Charles Swanton
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • Coordinated programs of gene expression drive brain development. Here, the authors use human embryonic stem cells and foetal cortical tissue as well as available GWAS statistics and analysis of genetic variants associated with neuropsychiatric disorders and cognition revealing a convergence on transcriptional programs regulating excitatory cortical neurogenesis.

    • Bret Sanders
    • Daniel D’Andrea
    • Eunju Shin
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-21
  • Catastrophic rock weakening upon impact of a meteorite, and hence flow, is shown to be followed by regained rock strength that enabled the formation of the peak ring during cratering.

    • Ulrich Riller
    • Michael H. Poelchau
    • Timothy J. Bralower
    Research
    Nature
    Volume: 562, P: 511-518
  • Immune lymphocyte estimation from nucleotide sequencing (ImmuneLENS) infers B cell and T cell fractions from whole-genome sequencing data. Applied to the 100,000 Genomes Project datasets, circulating T cell fraction provides sex-dependent and prognostic insights in patients.

    • Robert Bentham
    • Thomas P. Jones
    • Nicholas McGranahan
    ResearchOpen Access
    Nature Genetics
    Volume: 57, P: 694-705
  • Combination of epidemiology, preclinical models and ultradeep DNA profiling of clinical cohorts unpicks the inflammatory mechanism by which air pollution promotes lung cancer

    • William Hill
    • Emilia L. Lim
    • Charles Swanton
    Research
    Nature
    Volume: 616, P: 159-167
  • Analyses of multiregional tumour samples from 421 patients with non-small cell lung cancer prospectively enrolled to the TRACERx study reveal determinants of tumour evolution and relationships between intratumour heterogeneity and clinical outcome.

    • Alexander M. Frankell
    • Michelle Dietzen
    • Charles Swanton
    ResearchOpen Access
    Nature
    Volume: 616, P: 525-533
  • Impact basins on the Moon are considered as the best landing sites for the recovery of information about the lunar interior. To inform future lunar missions, Kringet al. combine remote sensing and numerical modelling to generate a geological map of the Schrodinger Impact Basin peak ring.

    • David A. Kring
    • Georgiana Y. Kramer
    • Mitali Chandnani
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-10
  • A longitudinal evolutionary analysis of 126 lung cancer patients with metastatic disease reveals the timing of metastatic divergence, modes of dissemination and the genomic events subject to selection during the metastatic transition.

    • Maise Al Bakir
    • Ariana Huebner
    • Charles Swanton
    ResearchOpen Access
    Nature
    Volume: 616, P: 534-542
  • Computational and machine-learning approaches that integrate genomic and transcriptomic variation from paired primary and metastatic non-small cell lung cancer samples from the TRACERx cohort reveal the role of transcriptional events in tumour evolution.

    • Carlos Martínez-Ruiz
    • James R. M. Black
    • Nicholas McGranahan
    ResearchOpen Access
    Nature
    Volume: 616, P: 543-552
  • Major histocompatibility complex (MHC) loss of heterozygosity, allele-specific mutation and measurement of expression and repression (MHC Hammer) detects disruption to human leukocyte antigens due to mutations, loss of heterogeneity, altered gene expression or alternative splicing. Applied to lung and breast cancer datasets, the tool shows that these aberrations are common across cancer and can have clinical implications.

    • Clare Puttick
    • Thomas P. Jones
    • Nicholas McGranahan
    ResearchOpen Access
    Nature Genetics
    Volume: 56, P: 2121-2131