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Showing 1–50 of 860 results
Advanced filters: Author: Jonathan Ni Clear advanced filters
  • The deactivation of CO2 reduction electrocatalyst in microbial media remains a key barrier for hybrid bio-electrochemical systems. Here, the authors present a bioadaptive nickel single atom catalyst that resists organic poisoning to enable high-rate CO-mediated isopropanol production from CO2.

    • Guangye Zhou
    • Jonathan R. Humphreys
    • Zhiyong Jason Ren
    ResearchOpen Access
    Nature Communications
    P: 1-11
  • Understanding collective behaviour is an important aspect of managing the pandemic response. Here the authors show in a large global study that participants that reported identifying more strongly with their nation reported greater engagement in public health behaviours and support for public health policies in the context of the pandemic.

    • Jay J. Van Bavel
    • Aleksandra Cichocka
    • Paulo S. Boggio
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-14
  • Large-effect variants in autism remain elusive. Here, the authors use long-read sequencing to assemble phased genomes for 189 individuals, identifying pathogenic variants in TBL1XR1, MECP2, and SYNGAP1, plus nine candidate structural variants missed by short-read methods.

    • Yang Sui
    • Jiadong Lin
    • Evan E. Eichler
    ResearchOpen Access
    Nature Communications
    P: 1-16
  • Intramolecular coupling of extended biphen[n]arenes is developed to yield cycloparaphenylenes (CPPs). The modular nature of biphen[n]arenes makes it possible to customize CPP structures, which permits tuning of their photophysical properties. The syntheses are short and excellent yields are achieved. Moreover, postsynthetic functionalization is possible.

    • Xu-Sheng Du
    • Pei-Pei Meng
    • Chunju Li
    Research
    Nature Synthesis
    P: 1-10
  • Electrocatalytic water splitting to produce H2 is impeded by slow reaction kinetics over noble-metal-free catalysts at the electrodes. Here, the authors use high-frequency alternating magnetic fields to locally heat FeC–Ni core–shell catalysts, enhancing the kinetics of the oxygen and hydrogen evolution reactions.

    • Christiane Niether
    • Stéphane Faure
    • Alain Rouet
    Research
    Nature Energy
    Volume: 3, P: 476-483
  • The activity of the membrane-bound enzyme pMMO depends on copper but the location of the copper centers is still under debate. Here, the authors reconstitute pMMO in nanodiscs and use native top-down MS to localize its copper centers, providing insights into which sites are essential for activity.

    • Soo Y. Ro
    • Luis F. Schachner
    • Amy C. Rosenzweig
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-12
  • Exactly how hydrogen renders metals brittle is still unclear, and it remains a challenge to predict component failure due to hydrogen embrittlement. Here, the authors identify a class of grain boundaries in a nickel superalloy that deflects propagating cracks and improves alloy resistance to hydrogen.

    • John P. Hanson
    • Akbar Bagri
    • Michael J. Demkowicz
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-11
  • Activity-based protein profiling identifies covalent small molecules that potentiate the activity of the METTL5:TRMT112 complex through binding to a complexoform-restricted allosteric pocket absent in other TRMT112:methyltransferase complexes

    • F. Wieland Goetzke
    • Steffen M. Bernard
    • Benjamin F. Cravatt
    ResearchOpen Access
    Nature Chemical Biology
    P: 1-13
  • Introduction of structured neutron waves carrying orbital angular momentum (OAM) in small-angle neutron scattering experiments provides novel approaches to the characterisation of material properties. Here the authors demonstrate the retrieval of phase information in far-field intensity profiles by means of an interferometric technique using helical neutron waves.

    • Dusan Sarenac
    • Melissa E. Henderson
    • Dmitry A. Pushin
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-6
  • Electrons in f orbitals can create localized states that interact strongly and drive strange metal and critical behaviour via the Kondo mechanism. Now a mechanism of geometric frustration enables similar phenomena with d electrons.

    • Linda Ye
    • Shiang Fang
    • Joseph G. Checkelsky
    Research
    Nature Physics
    Volume: 20, P: 610-614
  • Light represses biofilm formation and production of virulence factors in the pathogenic bacterium Pseudomonas aeruginosa. Here, Manias et al. identify a periplasmic microprotein that regulates this process by activating the degradation of a component of the light-sensing pathway.

    • Dimitrios Manias
    • Ayushi Mishra
    • Sampriti Mukherjee
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-17
  • Inversion of C3 stereochemistry of monoterpenoid indole alkaloids (MIAs) has to occur at some point during their biosynthesis; however, the mechanism has remained unresolved. Here, the authors report an oxidase–reductase enzyme pair encoded within a gene cluster and demonstrate their collaborative role in inverting MIA C3 stereochemistry.

    • Jaewook Hwang
    • Jonathan Kirshner
    • Yang Qu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • The construction of a self-assembled nanocage composed of four metal ions and six antiaromatic walls is demonstrated, and the effect of antiaromaticity on the host–guest properties is investigated.

    • Masahiro Yamashina
    • Yuya Tanaka
    • Jonathan R. Nitschke
    Research
    Nature
    Volume: 574, P: 511-515
  • Demand for crops is increasing, but it is not clear whether the yields can meet this demand. Using crop yield observations, this study analyses global trends and finds that while yields continue to increase in some areas, across 24–39% of crop-growing regions, yields have stagnated or declined over the past 50 years.

    • Deepak K. Ray
    • Navin Ramankutty
    • Jonathan A. Foley
    Research
    Nature Communications
    Volume: 3, P: 1-7
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • Recurrent features in human antibodies targeting the influenza neuraminidase active site reveal a convergent strategy of receptor mimicry, providing structural insights that could guide the design of broad and effective influenza vaccines.

    • Gyunghee Jo
    • Seiya Yamayoshi
    • Andrew B. Ward
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Bovine H5N1 viruses are lethal in laboratory animals, but they retain avian traits including limited transmission. Their responsiveness to approved antivirals and candidate vaccines lowers human risk, but ongoing surveillance is critically needed.

    • Thomas P. Fabrizio
    • Ahmed Kandeil
    • Richard J. Webby
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • Strong correlations between electrons in topological surface states drive the formation of surface van Hove singularities. These may be linked to charge density waves in the surface states.

    • Daniel S. Sanchez
    • Tyler A. Cochran
    • M. Zahid Hasan
    Research
    Nature Physics
    Volume: 19, P: 682-688
  • This work identified cyclic peptide inhibitors of a mammalian N-terminal cysteine oxidase, ADO, through mRNA display, one of which was used as a scaffold to graft substrate moieties, allowing key interactions to be assessed through structural and biochemical approaches.

    • Yannasittha Jiramongkol
    • Karishma Patel
    • Mark D. White
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

    • Marta Paczkowska
    • Jonathan Barenboim
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • A preinfusion circulatory inflammation biomarker-based signature predicts the likelihood of treatment failure in patients with non-Hodgkin lymphoma who were treated with CAR-T cell therapy, with an inflammatory cluster assignment being prognostic of clinical response and survival outcomes.

    • Sandeep S. Raj
    • Teng Fei
    • Roni Shouval
    ResearchOpen Access
    Nature Medicine
    Volume: 31, P: 1183-1194
  • In this study, the authors present an fMRI‑based signature of corticospinal connections, which predicts individual pain sensitivity, generalizes to patient cohorts, and tracks changes after brain stimulation, suggesting a biomarker to guide personalized pain care.

    • Xiao-Min Lin
    • Ling-Fei Guo
    • Ya-Zhuo Kong
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-18
  • Nickelates have been shown to host unconventional superconductivity, and recently it has been found that the choice of substrate can significantly change the superconducting critical temperature. This suggests, that like some Cuprates, strain could be important. Here Gao, Fan, Wang, and coauthors find that magnetic excitations in a parent Nickelate are insensitive to substrate choice, and therefore strain, which differs markedly from the case of Cuprates.

    • Qiang Gao
    • Shiyu Fan
    • Zhihai Zhu
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-7
  • The sensitivities of a set of bacterial metal-sensing transcriptional regulators explain how a protein, such as the cobalt chelatase CbiK, is metalated with its cognate metal in cells rather than mis-metalated with more tightly binding metals.

    • Deenah Osman
    • Maria Alessandra Martini
    • Nigel J. Robinson
    Research
    Nature Chemical Biology
    Volume: 15, P: 241-249
  • Atom probe tomography can image chemical composition at the nanoscale, but our understanding of how it images voids, or empty spaces, is still lacking. Here, the authors combine atom probe tomography, scanning transmission electron microscopy, and field-evaporation theory to show how voids are imaged and subsequently measured.

    • Xing Wang
    • Constantinos Hatzoglou
    • Jonathan D. Poplawsky
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-11
  • Here, the authors present and characterise a collection of human gut bacteria including novel taxa associated with health conditions and a large diversity of plasmids. All isolates, their genomes and metadata are publicly available, facilitating research by others (www.hibc.rwth-aachen.de).

    • Thomas C. A. Hitch
    • Johannes M. Masson
    • Thomas Clavel
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • HIV vaccine candidates often have limited capacity to induce broadly neutralizing antibodies (nAbs). In this study, the authors show that stabilized Clade C HIV-1 Env protein trimers decorated on CoPoP liposomes induce nAbs against 18 of 20 multiclade tier 2 HIV-1 strains in immunized rabbits.

    • Annemart Koornneef
    • Kanika Vanshylla
    • Frank Wegmann
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-16
  • The Late Miocene terrestrial climate in eastern North Greenland displayed elevated temperatures at moderate atmospheric CO2 levels and was highly variable, reflecting the shifting orbital and ocean circulation forcings in the Arctic as the world cooled, according to proxy records from speleothems.

    • Gina E. Moseley
    • Gabriella Koltai
    • R. Lawrence Edwards
    ResearchOpen Access
    Nature Geoscience
    Volume: 18, P: 1252-1258
  • Lipid bilayers containing porphyin-phospholipid that is chelated with cobalt have been shown to capture his-tagged proteins and peptides. This method offers a simple route for functionalizing pre-formed lipid bilayers without disrupting their integrity. Using this approach homing peptides were attached to cargo-loaded liposomes to enable tumour targeting, and an HIV-derived protein fragment elicited antibodies following binding to immunogenic liposomes.

    • Shuai Shao
    • Jumin Geng
    • Jonathan F. Lovell
    Research
    Nature Chemistry
    Volume: 7, P: 438-446
  • The authors identify adult neurogenesis in individuals with epilepsy that declines with disease duration and epileptiform activity. Additionally, astrogenesis persists and immature astrocyte activity is inversely associated with neuronal hyperactivity.

    • Aswathy Ammothumkandy
    • Kristine Ravina
    • Michael A. Bonaguidi
    Research
    Nature Neuroscience
    Volume: 25, P: 493-503
  • Typical quantum error correcting codes assign fixed roles to the underlying physical qubits. Now the performance benefits of alternative, dynamic error correction schemes have been demonstrated on a superconducting quantum processor.

    • Alec Eickbusch
    • Matt McEwen
    • Alexis Morvan
    ResearchOpen Access
    Nature Physics
    Volume: 21, P: 1994-2001
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12