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Showing 51–100 of 861 results
Advanced filters: Author: Jonathan Ni Clear advanced filters
  • Neural mechanisms mediating information flow and processing in dendrites are not fully understood. Here the authors developed techniques to map bioelectrical excitations in the dendrites of neurons in acute slices of mouse brain tissue. They developed a holistic picture of the roles of dendritic excitations in spike back-propagation.

    • Pojeong Park
    • J. David Wong-Campos
    • Adam E. Cohen
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • An analysis of 24,202 critical cases of COVID-19 identifies potentially druggable targets in inflammatory signalling (JAK1), monocyte–macrophage activation and endothelial permeability (PDE4A), immunometabolism (SLC2A5 and AK5), and host factors required for viral entry and replication (TMPRSS2 and RAB2A).

    • Erola Pairo-Castineira
    • Konrad Rawlik
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 617, P: 764-768
  • Some cancer patients first present with metastases where the location of the primary is unidentified; these are difficult to treat. In this study, using machine learning, the authors develop a method to determine the tissue of origin of a cancer based on whole sequencing data.

    • Wei Jiao
    • Gurnit Atwal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Smells are detected in the nose by odorant molecules binding to a specific G protein-coupled receptor on the cell surface. Here, authors have determined the atomic structure of a receptor bound to an odorant molecule that showing how the odorant binds and activates the receptor.

    • Anastasiia Gusach
    • Yang Lee
    • Christopher G. Tate
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • Non-random chemical mixings that are intrinsic to medium- and high-entropy alloys are difficult to detect and quantify. Here the authors perform a diffraction data-mining analysis, revealing nanoclusters of short-range orders in a CrCoNi alloy, and their impacts on chemical homogeneity and dislocations slip.

    • Haw-Wen Hsiao
    • Rui Feng
    • Jian-Min Zuo
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-9
  • Analysis of the longest-lived mammal, the bowhead whale, reveals an improved ability to repair DNA breaks, mediated by high levels of cold-inducible RNA-binding protein.   

    • Denis Firsanov
    • Max Zacher
    • Vera Gorbunova
    ResearchOpen Access
    Nature
    Volume: 648, P: 717-725
  • Thermal barrier coatings increase the temperature at which jet engines can function, but are subjected to large mechanical forces during service. Here, the authors use synchrotron X-ray diffraction to quantify strain at different depths in a thermal barrier coating subjected to thermal gradients and mechanical load.

    • Kevin Knipe
    • Albert Manero II
    • Seetha Raghavan
    Research
    Nature Communications
    Volume: 5, P: 1-7
  • This study identifies TriDTCs as a family of terpene cyclases responsible for harzianol I and wickerol A biosynthesis in Trichoderma fungi and are found to regulate Trichoderma’s chlamydospore and Aspergillus oryzae’s sclerotia formation through producing harzianol I.

    • Min-Jie Yang
    • De-Sen Li
    • Sheng-Hong Li
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • Designing full-color spherical artificial eyes remains a challenge. Here, Long et al. report a bionic eye where each pixel on the hemispherical retina can recognize different colors based on the unique bidirectional photo response; with optical adaptivity and neuromorphic preprocessing ability

    • Zhenghao Long
    • Xiao Qiu
    • Zhiyong Fan
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-9
  • Crystal structures of BAK core domain dimers suggest a mechanism by which lipids contribute to the oligomerization of BAK, which is essential for BAK-mediated permeabilization of the mitochondrial outer membrane.

    • Angus D. Cowan
    • Nicholas A. Smith
    • Peter E. Czabotar
    Research
    Nature Structural & Molecular Biology
    Volume: 27, P: 1024-1031
  • Hydrogel materials have emerged as versatile platforms for biomedical applications. Here this group reports an mRNA lipid nanoparticle-incorporated microgel matrix for immune cell recruitment/antigen expression and presentation/cellular interaction thereby eliciting antitumor efficacy with a single dose.

    • Yining Zhu
    • Zhi-Cheng Yao
    • Hai-Quan Mao
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Jing et al. show that COVID-19 infection causes white adipose tissue (AT) browning in mice and hamsters, which is mediated by VEGF action in the AT. VEGF blockade can ameliorate browning phenotype and COVID-19-induced weight loss, potentially providing a strategy to treat infection-induced AT atrophy.

    • Xu Jing
    • Jieyu Wu
    • Yihai Cao
    ResearchOpen Access
    Nature Metabolism
    Volume: 4, P: 1674-1683
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330
  • Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

    • Moritz Gerstung
    • Clemency Jolly
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 122-128
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

    • Yulia Rubanova
    • Ruian Shi
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • The bicyclo[1.1.1]pentane (BCP) motif has drawn increasing attention recently in drug discovery. Now, a programmable bis-functionalization strategy has been developed to modularly access bridge-substituted BCP scaffolds, based on the inherent chemoselectivity of BCP bis-boronates (3° > 2°). This strategy should enable further structure–activity relationship studies of BCP-containing drug candidates and open the door to unexplored chemical space.

    • Yangyang Yang
    • Jet Tsien
    • Tian Qin
    Research
    Nature Chemistry
    Volume: 16, P: 285-293
  • The human lipopolysaccharide receptor caspase-4 captures its cytokine substrate pro-IL-18 via a mechanism that is distinct from known caspase–substrate interactions, leading to inflammasome-independent IL-18 release from macrophages.

    • Pascal Devant
    • Ying Dong
    • Jonathan C. Kagan
    Research
    Nature
    Volume: 624, P: 451-459
  • Here the authors combine a deep generative model with structure-based drug design and prospectively validate functionally active, nanomolar, A2A adenosine receptor ligands and solve their crystal structures to close the Artificial Intelligence Structure-Based Drug Design loop.

    • Morgan Thomas
    • Pierre G. Matricon
    • Chris de Graaf
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • Adoptive cell therapies (ACT) hold promise for cancer immunotherapy, but optimization is still an ongoing process. Here the authors report CD4-targeted, nanoparticle-based artificial antigen-presenting cells that expand CD4+ T cells capable of lysing tumor cell lysis in vitro, and CD8+ T cells showing antitumor activity in a mouse melanoma model.

    • Ariel Isser
    • Aliyah B. Silver
    • Jonathan P. Schneck
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-19
  • Over 90% of calcareous nannoplankton species disappeared during the Cretaceous–Palaeogene mass extinction, which occurred after an impact event. Palaeontological analyses show that the extinction was most pronounced in the Northern Hemisphere oceans, possibly as a result of an increased concentration of particulates created by the impact in the north.

    • Shijun Jiang
    • Timothy J. Bralower
    • Jonathan D. Schueth
    Research
    Nature Geoscience
    Volume: 3, P: 280-285
  • Zeinert et al. provide cryo-EM structures of the E. coli Mg2+ importer MgtA: unexpectedly, this P-type ATPase is a dimer with an uncommon transmembrane ion-binding site and knotted N-terminus, which are functionally important features.

    • Rilee Zeinert
    • Fei Zhou
    • Doreen Matthies
    Research
    Nature Structural & Molecular Biology
    Volume: 32, P: 1633-1643
  • 134Ce and 134La have great potential as companion diagnostic isotopes for radiotherapeutics labelled with α-emitting 225Ac and 227Th. Now, by controlling the CeIII/CeIV redox couple, the large-scale production, purification and characterization of 134Ce- and 134La-based radiolabels has been achieved and their use for in vivo positron emission tomography is demonstrated.

    • Tyler A. Bailey
    • Veronika Mocko
    • Rebecca J. Abergel
    Research
    Nature Chemistry
    Volume: 13, P: 284-289
  • Characterization of DCAF16-based BRD4 molecular glue degraders revealed a trans-labeling mechanism termed ‘template-assisted covalent modification’, which opens a new path for proximity-driven pharmacology.

    • Yen-Der Li
    • Michelle W. Ma
    • Benjamin L. Ebert
    ResearchOpen Access
    Nature Chemical Biology
    Volume: 20, P: 1640-1649
  • A mass spectrometry-based approach globally identifies protein regulators of metabolism and reveals the role of LRRC58 in controlling cysteine catabolism.

    • Haopeng Xiao
    • Martha Ordonez
    • Edward T. Chouchani
    ResearchOpen Access
    Nature
    Volume: 647, P: 268-276
  • The current model for B-family DNA polymerases in archaea is one of single-subunit enzymes in contrast to the multi-subunit complexes in eukaryotes. Here the authors show that PolB1 fromSulfolobus solfataricusexists as a heterotrimeric complex in cell extracts.

    • Jiangyu Yan
    • Thomas R. Beattie
    • Stephen D. Bell
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-15
  • During mitosis, kinesin-5 motors are thought to crosslink microtubules in a muscle-like sliding filament mechanism. By combining electron microscopy with other structural tools, the authors reveal how four kinesin-5 polypeptides are organized into bipolar minifilaments.

    • Seyda Acar
    • David B. Carlson
    • Jonathan M. Scholey
    ResearchOpen Access
    Nature Communications
    Volume: 4, P: 1-11
  • The authors model the transient temperature response of micro-thermoelectric devices with AC current applied, which is locally integrated under a transient hot spot. They develop a strategy for actively canceling the transient temperature variations.

    • Yihan Liu
    • Hao-Yuan Cheng
    • Feng Xiong
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-8
  • The kinesin-3 KIF1C transports dense core vesicles in neurons and delivers integrins to cell adhesions sites. Here the authors show that KIF1C's autoinhibitory interactions are released upon binding of protein tyrosine phosphatase PTPN21 or cargo adapter Hook3 resulting in cargo-activated transport.

    • Nida Siddiqui
    • Alexander James Zwetsloot
    • Anne Straube
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-16
  • Insoluble protein expression continues to be a bottleneck for biotechnology. Here, Chilkoti and colleagues report a method for generating and identifying hypersoluble intrinsically disordered protein fusion tags to improve soluble protein expression and rescue protein function.

    • Nicholas C. Tang
    • Jonathan C. Su
    • Ashutosh Chilkoti
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Here, the enzymatic activity of APOBEC3G resulting in conversion of 2′-deoxy-zebularine into a hydration product allowed the authors to capture the transition state, which provides a blueprint for designing a new class of transition state-mimicking inhibitors for this class of enzyme.

    • Atanu Maiti
    • Adam K. Hedger
    • Hiroshi Matsuo
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-10
  • Induced proximity by molecular glues is a strategy that leverages the recruitment of proteins to facilitate their modification or degradation. Here the authors present unbiased quantitative proteomic, biochemical and computational workflows that uncover hundreds of CRBN molecular glue targets using recombinant protein and cell lysate.

    • Kheewoong Baek
    • Rebecca J. Metivier
    • Eric S. Fischer
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Inflammasome assembly promotes the cleavage and oligomerisation of gasdermin D (GSDMD) and subsequent pore formation. Here the authors raise nanobodies to human gasdermin and characterize the pore formation process mediated by GSDMD and how antagonistic nanobodies prevent pyroptosis.

    • Lisa D. J. Schiffelers
    • Yonas M. Tesfamariam
    • Florian I. Schmidt
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-18
  • The insertion of metal atoms and heteroaromatic units provides a way to tune the optical, electronic and magnetic properties of graphene nanoribbons. Now the synthesis of a porphyrin-fused graphene nanoribbon with a narrow bandgap and high charge mobility has been achieved, and this material used to fabricate field-effect and single-electron transistors.

    • Qiang Chen
    • Alessandro Lodi
    • Harry L. Anderson
    ResearchOpen Access
    Nature Chemistry
    Volume: 16, P: 1133-1140
  • Quantitative analysis of the extinction spectra of dispersions of 2D materials is complicated by light scattering. Here, the authors investigate non-resonant scattering in suspensions of wide-bandgap nanosheets, and develop a general model which allows the scattering spectra to be used as metrics for particle size in nanosheet dispersions.

    • Andrew Harvey
    • Claudia Backes
    • Jonathan N. Coleman
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-11