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Showing 51–100 of 977 results
Advanced filters: Author: Yang Xuan Clear advanced filters
  • DNA computing systems face challenges in switching functions due to complex molecular redesigns. Here, the authors introduce a base Stacking-Mediated Allostery (SMALL) strategy enabling efficient function switching with minimal architecture changes (1-2 nucleotides), implemented across diverse logic operations and cellular gene regulation patterns.

    • Yongpeng Zhang
    • Bozhao Li
    • Cheng Zhang
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • The lack of efficient and diverse synthesis strategy has hindered the study of perifused cycles. Here, the authors report a metal-catalyzed cascade electrocyclization to access 5,6,7-perifused cycles, and demonstrated the versatility of this protocol in the late-stage modification of pharmaceuticals.

    • Jingpeng Han
    • Yongjian Yang
    • Baosheng Li
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-11
  • Diagnosing rare diseases, such as choroid neoplasias, remains a critical challenge. Here, the authors develop a multimodal concept-based interpretable model (MMCBM) to distinguish uveal melanoma from hemangioma and metastatic carcinoma, obtaining performance comparable to senior ophthalmologists in a large cohort of Asian patients with choroid neoplasms.

    • Yifan Wu
    • Yang Liu
    • Shi Gu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • Azetidine is a pharmacophore present in drug-related molecules. Here the authors unveil a two-metalloenzyme cascade leading to the azetidine-containing polyoximic acid, in which PolE functions as an Fe2+/pterin-dependent l-isoleucine desaturase, while PolF is a haem-oxygenase-like diiron oxidase, orchestrating the sequential desaturation and cyclization. These findings expand our knowledge of metalloenzymes.

    • Rong Gong
    • Yao Qu
    • Wenqing Chen
    Research
    Nature Chemistry
    P: 1-10
  • A gene-edited pig liver transplanted into a human recipient remains functional after 10 days and indicates that porcine organs could help meet the growing demand for liver transplants.

    • Kai-Shan Tao
    • Zhao-Xu Yang
    • Ke-Feng Dou
    ResearchOpen Access
    Nature
    Volume: 641, P: 1029-1036
  • Authors use a high-entropy engineering approach to produce fully amorphous BiTO films by exfoliation and annealing, creating crystalline regions, leading to flexible ceramics with dielectric properties.

    • Lvye Dou
    • Bingbing Yang
    • Yuan-Hua Lin
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-10
  • Single-layer NbSe2 has a charge density wave with two degenerate domains, related by mirror reflection. Here, using scanning tunneling microscopy, the authors observe the time-dependent movement of domain walls, and demonstrate reversible switching between the two domain types using a voltage pulse from the microscope tip.

    • Xuan Song
    • Liwei Liu
    • Yeliang Wang
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-7
  • Common sleep problems are linked to various health conditions, but are often underdiagnosed. This study presents a deep learning model trained on 15,785 nights of respiratory data for contactless sleep monitoring. Leveraging this model, the remote management platform enables real-time in-home sleep assessment, advancing sleep health equity.

    • Zhongxu Zhuang
    • Biao Xue
    • Hong Hong
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • ASPP1 promotes apoptosis of cardiomyocytes by increasing the trafficking of p53 to the nucleus. Here the authors show that, in fibroblasts, ASPP1 promotes the ubiquitination and degradation of p53, decreasing myofibroblast activity and improving cardiac fibrosis and function after myocardial infarction.

    • Shangxuan Li
    • Meng Yang
    • Yanjie Lu
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • Enantioselective oxidative cross-coupling of unactivated C(sp3)−H bonds and terminal alkynes is challenging. Here, the authors developed a copper/cinchona alkaloid catalyst for the asymmetric Sonogashira-type alkynylation of C(sp3)-H bonds via radical intermediates.

    • Zhen-Hua Zhang
    • Xiao-Yang Dong
    • Xin-Yuan Liu
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-10
  • Limited whole genome sequencing (WGS) of Asian populations results in a lack of representative reference panels, hindering imputation of Asian ancestry-specific genetic variants. Here the authors use WGS data from 11,067 individuals across 17 Asian countries to create a new reference panel which shows improved imputation accuracy for South Asian populations.

    • Meng-Yuan Yang
    • Jia-Dong Zhong
    • Hou-Feng Zheng
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • A large genome-wide association study of more than 5 million individuals reveals that 12,111 single-nucleotide polymorphisms account for nearly all the heritability of height attributable to common genetic variants.

    • Loïc Yengo
    • Sailaja Vedantam
    • Joel N. Hirschhorn
    ResearchOpen Access
    Nature
    Volume: 610, P: 704-712
  • The O-alkylation of tertiary alcohols with racemic tertiary electrophiles to access chiral hindered dialkyl ethers has remained elusive. Now this synthetic challenge has been accomplished by copper-catalysed C–O cross-coupling between tertiary haloamides and alcohols using designed ligands.

    • Jia-Yong Zhang
    • Ji-Jun Chen
    • Xin-Yuan Liu
    Research
    Nature Catalysis
    Volume: 8, P: 919-930
  • Moiré materials, where two van der Waals layers are stacked together with a small twist angle has proven to be a rich playground for exotic phases, with some materials, such as twisted MoTe2 being found to host quantum anomalous and fractional hall states among others. Here, An, Pan, Qiu and coauthors add to this, observing ferromagnetism in the second moiré band of twisted MoTe2.

    • Liheng An
    • Haiyang Pan
    • Wei-bo Gao
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-7
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

    • Moritz Gerstung
    • Clemency Jolly
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 122-128
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

    • Yiqun Zhang
    • Fengju Chen
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

    • Yulia Rubanova
    • Ruian Shi
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Junlin Yang et al. develop deep learning algorithms that diagnose adolescent idiopathic scoliosis with its accuracy superior to human specialists. This method reduces patients’ exposure to radiation and unnecessary referrals when used for routine scoliosis screening and periodic follow-ups.

    • Junlin Yang
    • Kai Zhang
    • Haotian Lin
    ResearchOpen Access
    Communications Biology
    Volume: 2, P: 1-8
  • Histamine mediates allergic reactions, inflammation, wakefulness, gastric acid secretion and neurotransmission, among others. Here, the authors determine 9 cryo-EM structures of the 4 histamine receptors in complexes with four different G protein subtypes, with endogenous or synthetic agonists bound, revealing their distinct features.

    • Xuan Zhang
    • Guibing Liu
    • Weimin Gong
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-16
  • Scattering in the archetypal oxide SrRuO3 is shown to enhance orbital currents. This counter-intuitive effect establishes a transformative paradigm for energy-efficient spintronic devices.

    • Siyang Peng
    • Xuan Zheng
    • Zhiming Wang
    Research
    Nature Materials
    Volume: 24, P: 1749-1755
  • The direct electro-reduction of diluted CO2 in acidic media can circumvent CO2 purification and reduce carbon loss. Here, the authors use an ionomer coating layer to enrich the diluted CO2 and block proton transport, thereby achieving high carbon utilization in diluted CO2 in an acidic electrolyte.

    • Xue-Rong Qin
    • Jing-Jing Li
    • Tong-Bu Lu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • Copper component is introduced into MOR zeolites via in situ high-temperature crystallization to tune pores for N2/CH4 sieving. MOR-Cu-210 exhibits high N2 adsorption capacity and N2/CH4 uptake ratio, alleviating the capacity-selectivity trade-off.

    • Xuan Tang
    • Xiaowei Bai
    • Jiangfeng Yang
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-10
  • Developing operando spectroscopic techniques with high sensitivity and reproducibility is of great importance for mechanistic investigations of surface-mediated electrochemical reactions. Here the authors study reaction mechanism of CO electroreduction using highly ordered gold superlattices as substrate for surface-enhanced infrared absorption spectroscopy.

    • Xiaoju Yang
    • Chao Rong
    • Xuan Yang
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-11
  • LC-MS-based proteomics often relies on data-dependent acquisition (DDA) for quality control. Here, the authors demonstrate that data-independent acquisition (DIA) outperforms DDA in detecting subtle changes in LC-MS status in large-scale quantitative proteomics experiments. They further prioritized 15 QC metrics and developed an AI model, implemented in a free software called iDIA-QC, for detecting LC-MS faults.

    • Huanhuan Gao
    • Yi Zhu
    • Tiannan Guo
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Advances have been made in thin-film piezoelectrics; however, the linearity of electric-field-induced strain with frequency and temperature still requires improvement. Here, by growing interlocked monoclinic and tetragonal polar nanoregions in (K,Na)NbO3 thin films, highly linear strains of up to 1.1% are reported at frequencies up to 105 Hz.

    • Yue-Yu-Shan Cheng
    • Xiaoming Shi
    • Jing-Feng Li
    Research
    Nature Materials
    Volume: 25, P: 73-79
  • Convective flow can enhance solar evaporation performance but requires external components and power input. Here, authors develop a Dyson sphere-like evaporator capable of self-generating internal convection to significantly improve evaporation rates. Energy allocation for direct water evaporation and vapor removal is investigated.

    • Deyu Wang
    • Xuan Wu
    • Haolan Xu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330