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Human lifespan changes in the brain’s functional connectome

Abstract

Functional connectivity of the human brain changes through life. Here, we assemble task-free functional and structural magnetic resonance imaging data from 33,250 individuals at 32 weeks of postmenstrual age to 80 years from 132 global sites. We report critical inflection points in the nonlinear growth curves of the global mean and variance of the connectome, peaking in the late fourth and late third decades of life, respectively. After constructing a fine-grained, lifespan-wide suite of system-level brain atlases, we show distinct maturation timelines for functional segregation within different systems. Lifespan growth of regional connectivity is organized along a spatiotemporal cortical axis, transitioning from primary sensorimotor regions to higher-order association regions. These findings elucidate the lifespan evolution of the functional connectome and can serve as a normative reference for quantifying individual variation in development, aging and neuropsychiatric disorders.

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Fig. 1: Normative growth patterns of the functional connectome at a global level over the lifespan.
Fig. 2: Population-level and individual-level functional atlases throughout the lifespan.
Fig. 3: Lifespan normative growth patterns of brain system segregation.
Fig. 4: Lifespan normative growth patterns of regional FCS.

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Data availability

The MRI dataset listed in Supplementary Table 1 is partly available at the ABCD Study (https://nda.nih.gov/), the ABIDE Initiative (https://fcon_1000.projects.nitrc.org/indi/abide/), the ADNI (https://adni.loni.usc.edu/), the Age_ility Project (https://www.nitrc.org/projects/age-ility/), the BCP (https://nda.nih.gov/), the Brain Genomics Superstruct Project (https://doi.org/10.7910/DVN/25833), the Calgary Preschool MRI Dataset (https://osf.io/axz5r/), the Cambridge Centre for Ageing and Neuroscience dataset (https://www.cam-can.org/index.php?content=dataset/), the dHCP (http://www.developingconnectome.org/data-release/second-data-release/), the HCP (https://www.humanconnectome.org/), the Lifespan Human Connectome Project (https://nda.nih.gov/), the NKI-RS dataset (https://fcon_1000.projects.nitrc.org/indi/pro/nki.html), the NSPN dataset (https://nspn.org.uk/), the Pediatric Imaging, Neurocognition, and Genetics (PING) data repository (http://pingstudy.ucsd.edu/), the Pixar Dataset (https://openfmri.org/dataset/ds000228/), the Strategic Research Program for Brain Sciences MRI Dataset (https://bicr-resource.atr.jp/srpbsopen/), the Southwest University Adult Lifespan Dataset (http://fcon_1000.projects.nitrc.org/indi/retro/sald.html), the Southwest University Longitudinal Imaging Multimodal Brain data repository (http://fcon_1000.projects.nitrc.org/indi/retro/southwestuni_qiu_index.html) and the UK Biobank Brain Imaging Dataset (https://www.ukbiobank.ac.uk/). The dhcpSym surface atlases in ages from 32 to 44 postmenstrual weeks are available at https://brain-development.org/brain-atlases/atlases-from-the-dhcp-project/cortical-surface-template/. The UNC four-dimensional infant cortical surface atlases are available at https://bbm.web.unc.edu/tools/. The fs_LR_32k surface atlas is available at https://balsa.wustl.edu/. The subcortical atlases are available at https://github.com/yetianmed/subcortex/. The brain charts and lifespan developmental atlases are shared online via GitHub (https://github.com/sunlianglong/BrainChart-FC-Lifespan/). Source data are provided with this paper.

Code availability

The codes used in this paper are available on GitHub (https://github.com/sunlianglong/BrainChart-FC-Lifespan). Software packages used herein include MRIQC v0.15.0 (https://github.com/nipreps/mriqc/), QuNex v0.93.2 (https://gitlab.qunex.yale.edu/), HCP pipeline v4.4.0-rc-MOD-e7a6af9 (https://github.com/Washington-University/HCPpipelines/releases/), ABCD-HCP pipeline v1 (https://github.com/DCAN-Labs/abcd-hcp-pipeline/), dHCP structural pipeline v1 (https://github.com/BioMedIA/dhcp-structural-pipeline/), dHCP functional pipeline v1 (https://git.fmrib.ox.ac.uk/seanf/dhcp-neonatal-fmri-pipeline/), iBEAT pipeline v1.0.0 (https://github.com/iBEAT-V2/iBEAT-V2.0-Docker/), MSM v3.0 (https://github.com/ecr05/MSM_HOCR/), FreeSurfer v6.0.0 (https://surfer.nmr.mgh.harvard.edu/), FSL v6.0.5 (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/), Connectome Workbench v1.5.0 (https://www.humanconnectome.org/software/connectome-workbench/), MATLAB R2018b (https://www.mathworks.com/products/matlab.html), SPM12 toolbox v6470 (https://www.fil.ion.ucl.ac.uk/spm/software/spm12/), GRETNA toolbox v2.0.0 (https://www.nitrc.org/projects/gretna/), BrainNet Viewer toolbox v20191031 (https://www.nitrc.org/projects/bnv/), cifti-matlab toolbox v2 (https://github.com/Washington-University/cifti-matlab/), HFR_ai toolbox v1.0-beta-20181108 (https://github.com/MeilingAva/Homologous-Functional-Regions//), System segregation code (https://github.com/mychan24/system-segregation-and-graph-tools), Python v3.8.3 (https://www.python.org/), neuroharmonize package v2.1.0 (https://github.com/rpomponio/neuroHarmonize/), scikit-learn package v1.1.3 (https://scikit-learn.org), R v4.2.0 (https://www.r-project.org/), GAMLSS package v5.4-3 (https://www.gamlss.com/) and ggplot2 package v3.4.2 (https://ggplot2.tidyverse.org/).

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Acknowledgements

This work was supported by grants from the National Natural Science Foundation of China (82021004, 82327807 and 31830034 to Y. He), the scientific and technological innovation 2030 - the major project of the Brain Science and Brain-Inspired Intelligence Technology (2021ZD0200500 to Q.D. and 2022ZD0211500 to M.R.X.), the Changjiang Scholar Professorship Award (T2015027 to Y. He), the Beijing Natural Science Foundation (JQ23033 to M.R.X.), the National Natural Science Foundation of China (31521063 and 31221003 to Q.D.; 82071998 to M.R.X.; T2325006 to G.L.G.; 82202245 to Q.L.L.; 81971690 to X.H.L.; 32130045 to S.Z.Q.; 81571062 and 82172018 to Yong Liu; 81471120 to X.Z.; 61633018 to Y. Han; 81901101 to P.W.; 81400890 to D.W.W.; and 81920108019, 82330058, 91649117, 81771344 and 81471251 to S.J.Q.), the Beijing Brain Initiative of Beijing Municipal Science & Technology Commission (Z181100001518003 to S.T.), the Fund of Shenzhen Institute for Neuroscience Research (to S.T.), the Science and Technology Plan Project of Guangzhou (2018-1002-SF-0442 to S.J.Q.), the Guangzhou Key Laboratory (09002344 to S.J.Q.) and the Key R&D Program of Sichuan Province (2023YFS0076 to T.L.C.). We are grateful to the ABCD Study, the Autism Brain Imaging Data Exchange (ABIDE) Initiative, the Alzheimer’s Disease Neuroimaging Initiative (ADNI), the Age_ility Project, the BCP, the Brain Genomics Superstruct Project, the Calgary Preschool MRI Dataset, the Cambridge Centre for Ageing and Neuroscience dataset, the dHCP, the HCP, the Lifespan Human Connectome Project (HCPA and HCPD), the Nathan Kline Institute-Rockland Sample (NKI-RS) dataset, the Neuroscience in Psychiatry Network (NSPN) dataset, the Pixar dataset, the Southwest University Adult Lifespan Dataset, the Southwest University Longitudinal Imaging Multimodal brain data repository, the UK Biobank brain imaging dataset, the Disease Imaging Data Archiving: Major Depressive Disorder (DIDA-MDD) Working Group and the Multi-center Alzheimer Disease Imaging (MCADI) Consortium. We thank the National Center for Protein Sciences at Peking University in Beijing, China, for assistance with MRI data acquisition. Data used in the preparation of this article were obtained from the ABCD Study website (https://abcdstudy.org/), held in the National Institute of Mental Health (NIMH) data archive. This is a multisite, longitudinal study designed to recruit more than 10,000 children aged 9–10 years and follow them over 10 years into early adulthood. The ABCD Study is supported by the National Institutes of Health (NIH) and additional federal partners under award numbers U01DA041048, U01DA050989, U01DA051016, U01DA041022, U01DA051018, U01DA051037, U01DA050987, U01DA041174, U01DA041106, U01DA041117, U01DA041028, U01DA041134, U01DA050988, U01DA051039, U01DA041156, U01DA041025, U01DA041120, U01DA051038, U01DA041148, U01DA041093, U01DA041089, U24DA041123 and U24DA041147. A full list of supporters is available at https://abcdstudy.org/federal-partners.html. A list of participating sites and a complete list of the study investigators can be found at https://abcdstudy.org/consortium_members/. ABCD consortium investigators designed and implemented the study and/or provided data but did not necessarily participate in the analysis or writing of this report. This paper reflects the views of the authors and may not reflect the opinions or views of the NIH or ABCD consortium investigators. The ABCD data repository grows and changes over time. The ABCD data used in this report is available via https://nda.nih.gov/edit_collection.html?id=3165/, shared by the DCAN Labs ABCD-BIDS Community Collection (ABCC; collection investigator: D. Fair). For ABIDE I, primary support for the work by A. Di Martino was provided by the NIMH (K23MH087770) and the Leon Levy Foundation. Primary support for the work by M. P. Milham and the INDI team was provided by gifts from J. P. Healy and the Stavros Niarchos Foundation to the Child Mind Institute, as well as by an NIMH award to M. P. Milham (R03MH096321). For ABIDE II, primary support for the work by A. Di Martino and team was provided by the NIMH (5R21MH107045). Primary support for the work by M. P. Milham and his team provided by the NIMH (5R21MH107045); Nathan S. Kline Institute of Psychiatric Research). Additional support was provided by gifts from J. P. Healey, P. Green and R. Cowen to the Child Mind Institute. For ADNI, data used in the preparation of this article were obtained from the ADNI database (https://adni.loni.usc.edu/). As such, the investigators within the ADNI contributed to the design and implementation of ADNI and/or provided data but did not participate in analysis or writing of this paper. A complete listing of ADNI investigators can be found at http://adni.loni.usc.edu/wp-content/uploads/how_to_apply/ADNI_Acknowledgement_List.pdf. Data collection and sharing for this project was funded by the ADNI (NIH grant U01 AG024904) and the Department of Defense (ADNI award number W81XWH-12-2-0012). ADNI is funded by the National Institute on Aging and the National Institute of Biomedical Imaging and Bioengineering, and through generous contributions from the following: AbbVie, Alzheimer’s Association; Alzheimer’s Drug Discovery Foundation; Araclon Biotech; BioClinica; Biogen; Bristol Myers Squibb; CereSpir; Cogstate; Eisai; Elan Pharmaceuticals; Eli Lilly and Company; EuroImmun; F. Hoffmann-La Roche and its affiliated company Genentech; Fujirebio; GE Healthcare; IXICO; Janssen Alzheimer Immunotherapy Research & Development; Johnson & Johnson Pharmaceutical Research & Development; Lumosity; Lundbeck; Merck & Co.; Meso Scale Diagnostics; NeuroRx Research; Neurotrack Technologies; Novartis Pharmaceuticals Corporation; Pfizer; Piramal Imaging; Servier; Takeda Pharmaceutical Company; and Transition Therapeutics. The Canadian Institutes of Health Research is providing funds to support ADNI clinical sites in Canada. Private sector contributions are facilitated by the Foundation for the NIH (https://fnih.org/). The grantee organization is the Northern California Institute for Research and Education, and the study is coordinated by the Alzheimer’s Therapeutic Research Institute at the University of Southern California. ADNI data are disseminated by the Laboratory for Neuro Imaging at the University of Southern California. For the BCP, data used herein is supported by an NIH grant (1U01MH110274) and the efforts of the UNC/UMN BCP Consortium. Data were provided by the dHCP, KCL-Imperial-Oxford Consortium funded by the European Research Council under the European Union Seventh Framework Programme (FP/2007-2013/ERC grant agreement no. 319456). We are grateful to the families who generously supported this trial. Data were provided by the HCP, WU-Minn Consortium (principal investigators: D. Van Essen and K. Ugurbil; 1U54MH091657) funded by the 16 NIH institutes and centers that support the NIH Blueprint for Neuroscience Research; and by the Mc-Donnell Center for Systems Neuroscience at Washington University. For HCP Lifespan, data were supported by the NIMH (award number U01MH109589) and by funds provided by the McDonnell Center for Systems Neuroscience at Washington University in St. Louis. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH. For NKI-RS, funding for key personnel provided in part by the New York State Office of Mental Health and Research Foundation for Mental Hygiene. Additional project support provided by the NKI Center for Advanced Brain Imaging, the Brain Research Foundation (Chicago), the Stavros Niarchos Foundation and NIH grant P50 MH086385-S1. The NSPN study was funded by a Wellcome Trust award to the University of Cambridge and the University College London. This research has been conducted using data from the UK Biobank (https://www.ukbiobank.ac.uk/). The UK Biobank is generously supported by its founding funders the Wellcome Trust and UK Medical Research Council, as well as the Department of Health, Scottish Government, the Northwest Regional Development Agency, the British Heart Foundation and Cancer Research UK.

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L.L.S. and Y. He conceptualized the study. Y. He supervised the project. L.L.S., T.D.Z., X.Y.L., M.R.X. and Y. He designed the methodology. L.L.S. developed visualizations. Q.L.L., X.H.L., D.N.D., Z.L.Z., Z.L.X. and Z.X.C. provided guidance on data analysis and interpretation of the results. L.L.S., X.Y.L., Q.W., C.X.P., Q.Y., Q.L.L., Y.H.X., R.H., H.S.Y., Ying Liu and M.R.X. performed data quality control. G.L.G., Y.C.B., P.D.C., R.C., Y.C., T.L.C., J.L.C., Y.Q.C., Z.J.D., Y.D., Y.Y.D., Q.D., J.-H.G., Q.Y.G., Y. Han, Z.Z.H., C.-C.H., R.W.H., L.J.L., C.-P.L., Q.X.L., B.S.L., C.L., N.Y.L., Yong Liu, J.L., L.L.M., W.W.M., S.Z.Q., J.Q., S.J.Q., T.M.S., S.P.T., Y.Q.T., S.T., D.W.W., F.W., J.L.W., P.W., X.Q.W., Y.P.W., D.T.W., Y.K.W., P.X., X.F.X., L.Y.Y., H.B.Z., X.Z., G.Z., Y.T.Z. and S.Y.Z. collected a subset of the data for this study. L.L.S. and Y. He wrote the manuscript. All authors reviewed the final manuscript.

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Correspondence to Yong He.

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Extended data

Extended Data Fig. 1 Distance-related lifespan growth patterns of the global connectome.

Normative growth curves and growth rates of the global mean of short-range (a), middle-range (b), and long-range (c) functional connectome. In the upper panel, the median (50th) centile of each curve is represented by a solid line, while the 5th, 25th, 75th, and 95th centiles are indicated by dotted lines. In the lower panel, the growth rate of each curve is characterized by the first derivative of the median centile line. The gray shaded areas represent the 95% confidence interval, which were estimated by bootstrapping 1,000 times (see Methods for details). yr, year.

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Extended Data Fig. 2 Lifespan growth patterns in interindividual variability of the functional connectome.

a, Lifespan growth curves and growth rates of interindividual variability of the global mean of the connectome (left panel), global variance of the connectome (middle panel), and global system segregation (right panel). b, Lifespan growth curves (showed as centile lines) and growth rates (showed as the central line) of interindividual variability system segregation in each network. The gray shaded areas represent the 95% confidence interval, which were estimated by bootstrapping 1,000 times. VIS, visual; SM, somatomotor; DA, dorsal attention; VA, ventral attention; LIM, limbic; FP, frontoparietal; DM, default mode; yr, year.

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Extended Data Fig. 3 Statistical differences in functional homogeneity among three atlases.

a, One-way repeated analysis of variance (RANOVA) of global homogeneity for each age group. Within each age interval, for each participant we calculated the within-system homogeneity of three parcellation atlases, namely the adult-based group atlas, the age-specific group atlas, and the individual-specific atlas. The within-system homogeneity was quantified by averaging Pearson’s correlations between the time series of all vertex pairs within each system. Given that the iterative processes for both the age-specific group atlas and the individual-specific atlas were based on the finer 18-network parcellation, we calculated within-system homogeneity using the 18 networks. To summarize an overall system homogeneity, we averaged the homogeneity values across systems. The RANOVA revealed significant differences in the global homogeneity among three atlases for any given age group (all F > 267, p < 10−26, two-sided). The gray lines connect three atlases for the same participant. b, The post hoc analyses revealed group differences (all p < 10−8, two-sided, Bonferroni-corrected) in functional homogeneity between any pairs of atlases. The bars for each age group represent the mean difference in global homogeneity between two atlases for all participants in that group. Notably, for the 14 age intervals from 32 postmenstrual weeks to 7 years and from 75 to 80 years, the number of participants included in each interval was fewer than 300. Therefore, all these participants were involved in the construction of the age-specific group atlases (Supplementary Table 11). For the 12 age intervals from 7 to 70 years, the number of participants included in each interval was more than 300. Therefore, for the age range of 7 to 70 years, we compared functional homogeneity across atlases using independent participants who were not involved in the atlas construction. wk, week; mon, month; yr, year.

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Extended Data Fig. 4 Hierarchical clustering analysis of 26 age-specific group atlases.

a, Hierarchical clustering of the 26 × 26 atlas similarity matrix. The atlas similarity was defined as the degree of vertex label overlap between two atlases. For instance, if there were 4,000 vertices with the same label in two atlases, the atlas similarity was 4,000/4,609 = 0.868. b, The reference atlas was derived from the average of eight adult-like atlases, identified as a homogeneous cluster of 18- to 80-year-old atlases. For each vertex, we assigned the label as the system that exhibited the highest occurrence probability across the eight atlases, generating the 7-network reference atlas. VIS, visual; SM, somatomotor; DA, dorsal attention; VA, ventral attention; LIM, limbic; FP, frontoparietal; DM, default mode; w, week; m, month; y, year.

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Extended Data Fig. 5 Lifespan growth patterns of within-system and between-system functional connectivity.

The lower triangular matrix (shown in black) represents the normative growth curves for within-system and between-system FC, while the upper triangular matrix (shown in blue) represents the growth rates for these FC measures. The diagonal of the matrix shows the growth curves and growth rates of within-system FC; the off-diagonal elements represent the growth curves and growth rates of between-system FC. For the growth curve, the median (50th) centile is shown as a solid line, and the 5th, 25th, 75th, and 95th centiles are represented by dotted lines. The growth rate is characterized by the first derivative of the median centile. The gray shaded areas denote the 95% confidence interval, estimated through bootstrapping 1,000 times. VIS, visual; SM, somatomotor; DA, dorsal attention; VA, ventral attention; LIM, limbic; FP, frontoparietal; DM, default mode; FC, functional connectivity.

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Extended Data Fig. 6 Sex differences in the normative growth curves of the functional connectome at global, system, and regional levels.

a, Sex-stratified growth curves for global functional metrics. The solid line represents the 50th centile, with the two surrounding dotted lines denoting the 95% confidence interval, which were estimated by bootstrapping 1,000 times. The subplots from left to right represent the global mean of the connectome, global variance of the connectome, and global system segregation, respectively. b, Sex-specific growth curves for system segregation in each network. The solid line represents the 50th centile, with the two surrounding dotted lines denoting the 95% confidence interval. c, Sex differences in the growth curves of regional-level FCS, where red colors indicate that the values of males are significantly higher than those of females, and blue colors denote that the values of females are significantly higher than those of males. Among the 4,609 vertices, 3,872 exhibited significant sex differences (p < 0.05, Benjamini-Hochberg FDR corrected). FCS, functional connectivity strength; VIS, visual; SM, somatomotor; DA, dorsal attention; VA, ventral attention; LIM, limbic; FP, frontoparietal; DM, default mode. M, male; F, female. **, p < 0.01, ***, p < 0.001, Benjamini-Hochberg FDR corrected. The exact p-values is provided in Supplementary Table 3.

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Extended Data Fig. 7 A series of sensitivity analyses for the validation of lifespan normative growth curves and growth rates of the functional connectome.

a, Global mean of the connectome. b, Global variance of the connectome. c, Global system segregation. d, System segregation in each network. These sensitive analyses included the validation of the potential effects of head motion using more strict head motion threshold (mean framewise displacement (FD) < 0.2 mm, N = 24,494), the impact of uneven sample and site distributions across ages using a balanced sampling strategy that ensures uniformity in participant and site numbers (N = 6,770, resampling 1,000 times), the reproducibility of the results using a split half approach (Nsubgroup1 = 16,663, Nsubgroup2 = 16,587), the potential effects of data samples using a bootstrap resampling analysis (1,000 times), and the potential effects of specific sites using a leave-one-site-out (LOSO) analysis. For the balanced resampling analysis, the figure showed the average of the 1,000 resampled median centile lines. For the bootstrapping resampling analysis, the figure showed the average of the 1,000 bootstrapped median centile lines. For the LOSO analysis, the figure displays the average of the 132 median centile lines. VIS, visual; SM, somatomotor; DA, dorsal attention; VA, ventral attention; LIM, limbic; FP, frontoparietal; DM, default mode; yr, year.

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Extended Data Fig. 8 Lifespan normative growth patterns of negative functional connectivity.

a, Global mean of negative functional connectivity by calculating averaged negative connectivity across all edges. The left panel shows the averaged median (50th) centile as a solid line, surrounded by the averaged 5th, 25th, 75th, and 95th centiles as dotted lines. In the right panel, the solid line illustrates the growth rate of the averaged median centile, with its 95% confidence interval highlighted by gray shaded areas. b, Global mean of negative connectivity by calculating averaged negative connectivity across only non-zero edges. The left panel shows the averaged median (50th) centile as a solid line, surrounded by the averaged 5th, 25th, 75th, and 95th centiles as dotted lines. In the right panel, the solid line illustrates the growth rate of the averaged median centile, with its 95% confidence interval highlighted by gray shaded areas. c, The median centiles (top panel) and their growth rates (bottom panel) for all vertices at several key age points. d, The lifespan growth axis of negative functional connectivity, represented by the first principal component (accounting for 53.5% of the variance) from a PCA on regional-level FCS curve. e, Based on the lifespan principal axis, all vertices across the brain were equally divided into 20 bins. The zero-centered curves of all vertices within each bin were averaged. The first vigintile (depicted in darkest blue) represents one pole of the axis, while the twentieth vigintile represents the opposite pole (depicted in darkest yellow). f, A strong negative correlation was observed between the lifespan principal growth axis and the sensorimotor-association (S-A) axis (r = -0.50, pspin < 0.0001, one-sided) (linear association shown with a 95% confidence interval). FCS, functional connectivity strength; PCA, principal component analysis; wk, week; yr, year.

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Extended Data Fig. 9 Lifespan normative growth patterns of regional system segregation of subcortical structures.

a, The subcortical parcellation (scale I) proposed by Tian et al.81, including eight regions: Hippocampus (HIP), Amygdala (AMY), Posterior thalamus (pTHA), Anterior thalamus (aTHA), Nucleus accumbens (NAc), Globus pallidus (GP), Putamen (PUT), Caudate nucleus (CAU). b, The left panel showed the normative growth curves of mean system segregation in the whole-subcortex. The median (50th) centile is represented by a solid line, while the 5th, 25th, 75th, and 95th centiles are indicated by dotted lines. The right panel showed the growth rates of mean system segregation in the whole-subcortex. The growth peak occurred at the third decade of life (32.1 years, 95% bootstrap confidence interval 31.0–33.2). The gray shaded areas represent the 95% confidence interval, which were estimated by bootstrapping 1,000 times. c, Normative growth curve (top panel, showed as centile lines) and growth rate (bottom panel, showed as the central line) of system segregation for each subcortical region. The gray shaded areas represent the 95% confidence interval. yr, year.

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Supplementary information

Supplementary Information

Supplementary Methods, Results 1–9, Figs. 1–25 and Tables 3–12 and names and affiliations of the consortium authors.

Reporting Summary

Supplementary Tables 1 and 2

The demographics and image acquisition of each scanner site.

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Sun, L., Zhao, T., Liang, X. et al. Human lifespan changes in the brain’s functional connectome. Nat Neurosci 28, 891–901 (2025). https://doi.org/10.1038/s41593-025-01907-4

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