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Showing 151–200 of 3395 results
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  • Interactions between the endoplasmic reticulum membrane protein complex (EMC) and the high-voltage-activated calcium channel CaVα2δ are mutually exclusive, and EMC-to-CaVα2δ hand-off involves a divalent ion-dependent step and CaV1.2 element ordering.

    • Zhou Chen
    • Abhisek Mondal
    • Daniel L. Minor Jr
    Research
    Nature
    Volume: 619, P: 410-419
  • RSV and hMPV infections pose significant health risks in vulnerable populations. Here, the authors used a systematic approach to identify mutations critical for fusion protein metastability and rationally design uncleaved prefusion-closed trimers for RSV and hMPV F proteins that induce robust antibody responses in vivo.

    • Yi-Zong Lee
    • Jerome Han
    • Jiang Zhu
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-25
  • Unbiased chemical biology strategies for direct readout of small molecule protein interactomes provide advantages over target-focused approaches. Here, the authors describe the BioTAC system, a network-scale small molecule guided proximity labeling platform, to rapidly identify ligand-target interactomes.

    • Andrew J. Tao
    • Jiewei Jiang
    • Fleur M. Ferguson
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-11
  • The auxiliary subunit Cavβ regulates calcium channel density in the plasma membrane, but the mechanism by which this occurs has been poorly defined. Altier et al. find that Cavβ prevents ubiquitination of the Cav1.2 channels by the RFP2 ubiquitin ligase and subsequent targeting of the channels for proteasomal degradation.

    • Christophe Altier
    • Agustin Garcia-Caballero
    • Gerald W Zamponi
    Research
    Nature Neuroscience
    Volume: 14, P: 173-180
  • DNA polymerase θ is a polymerase-helicase essential for microhomology-mediated end-joining (MMEJ) or alternative end-joining of DNA. Here the authors use biochemical and biophysical methods to reveal how full-length human DNA polymerase θ performs MMEJ at the molecular level.

    • Samuel J. Black
    • Ahmet Y. Ozdemir
    • Richard T. Pomerantz
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-16
  • Fifty years ago, Köhler and Milstein introduced the world to hybridoma technology for the generation of monoclonal antibodies. Scientists have subsequently built upon this seminal discovery to develop antibody-based therapies for numerous diseases, with millions of patients benefiting from such drugs. To mark 50 years of monoclonal antibodies, this Review from Chan, Martyn and Carter provides an overview of how antibody engineering strategies have continued to improve antibody-based therapeutics, chiefly focusing on antibody-mediated targeting of B cells and also human epidermal growth factor receptor 2 (HER2)+ cancers. The authors also highlight the promise of emerging tools, including artificial intelligence, for development of the next generation of antibody-based therapeutics.

    • Andrew C. Chan
    • Greg D. Martyn
    • Paul J. Carter
    Reviews
    Nature Reviews Immunology
    Volume: 25, P: 745-765
  • Existing click chemistry-mediated approaches for dynamic imaging can suffer from low detection sensitivity. Here, the authors report a nitrile-aminothiol bioorthogonal fluorogenic probe with a ‘cleavage-click-assembly’ sensing action for ultrasensitive detection of small cancerous lesions.

    • Weiping Xu
    • Shujuan Yi
    • Jiaguo Huang
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Combined single-molecule spectroscopy, hydrogen–deuterium exchange and molecular dynamics approaches reveal that agonist activation of metabotropic glutamate receptors entails population of several intermediary states before G protein coupling.

    • Naomi R. Latorraca
    • Sam Sabaat
    • Ehud Y. Isacoff
    ResearchOpen Access
    Nature Chemical Biology
    Volume: 21, P: 1433-1443
  • A new acid-degradable linker termed ‘azido-acetal’ has been developed that rapidly hydrolyses at pH 6.0 but is stable at pH 7.4. Lipid nanoparticles made with this linker delivered mRNA in vivo and in vitro better than traditional lipid nanoparticles.

    • Sheng Zhao
    • Kewa Gao
    • Niren Murthy
    Research
    Nature Nanotechnology
    Volume: 19, P: 1702-1711
  • Induced proximity by molecular glues is a strategy that leverages the recruitment of proteins to facilitate their modification or degradation. Here the authors present unbiased quantitative proteomic, biochemical and computational workflows that uncover hundreds of CRBN molecular glue targets using recombinant protein and cell lysate.

    • Kheewoong Baek
    • Rebecca J. Metivier
    • Eric S. Fischer
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Catalytically inactive DNMT3B3 is crucial in de novo CpG methylation of DNA, interacting with the nucleosome core to orient catalytically active DNMT3A2 so that it can bind to nearby linker DNA.

    • Ting-Hai Xu
    • Minmin Liu
    • Peter A. Jones
    Research
    Nature
    Volume: 586, P: 151-155
  • Protocol for fabricating synthetic viscoelastic antigen-presenting cells and their application in T cell engineering. These synthetic cells support robust T cell activation and expansion and improve chimeric antigen receptor transduction efficiency.

    • Zeyang Liu
    • Yan-Ruide Li
    • Song Li
    Protocols
    Nature Protocols
    P: 1-35
  • Genetically encoded voltage sensors are useful tools for the analysis of membrane potential and its influence on cell function. Here, the authors present a range of these sensors with varying colours for rapid and sensitive neuronal voltage imaging.

    • Peng Zou
    • Yongxin Zhao
    • Adam E. Cohen
    Research
    Nature Communications
    Volume: 5, P: 1-10
  • CRISPR base editors are limited by protospacer adjacent motif (PAM) sequences and specific editing windows. Here, authors developed ABE-Ultramax, a suite of adenine base editors with high efficiency, low indel rates, and flexible PAM requirements, enabling precise biallelic editing in zebrafish.

    • Wei Qin
    • Fang Liang
    • Gaurav K. Varshney
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • Kucharska, Ivanochko and Hailemariam and colleagues solved cryo-EM structures of Pfs48/45, needed for Plasmodium falciparum development, with potent antibodies. The work revealed conformational epitopes, with implications for design of therapies against malaria.

    • Iga Kucharska
    • Danton Ivanochko
    • Jean-Philippe Julien
    ResearchOpen Access
    Nature Structural & Molecular Biology
    Volume: 32, P: 1396-1407
  • Introducing multiplicity and variation into the components of metal–organic frameworks has emerged as new fascinating directions in reticular chemistry. In this Review, the variances in the framework backbone, functionality and metal, and their leading to sequences of chemical information, are highlighted. Anisotropy in these structures is imposed by the variance and realized along a specific direction.

    • Wentao Xu
    • Binbin Tu
    • Qiaowei Li
    Reviews
    Nature Reviews Materials
    Volume: 5, P: 764-779
  • Single-cell RNA profiling without involving reverse transcription or microfluidics using a target panel of hybridization probes and split-pool barcoding.

    • Daniel Foyt
    • David Brown
    • Bo Huang
    ResearchOpen Access
    Communications Biology
    Volume: 8, P: 1-12
  • Molecular glues have great potential for drug discovery if they can be systematically discovered. Konstantinidou, et al describe a scaffold-hopping approach using multicomponent reaction chemistry to design molecular glues that induce 14-3- 3σ/ERα formation in cells.

    • Markella Konstantinidou
    • Marios Zingiridis
    • Michelle R. Arkin
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Manufacturing complexities, low yield and stability issues have hampered the clinical translation and scaling-up of immunoliposomes to meet the needs of pharmaceutical-grade products. The authors propose a one-step method of incorporating chimeric nanobodies tagged to hydrophobic linkers into liposomes, allowing targeted delivery of small-molecule anti-cancer drugs to tumours.

    • Md. Mofizur Rahman
    • Jing Wang
    • Yuan Wan
    Research
    Nature Nanotechnology
    Volume: 19, P: 818-824
  • CARD9 and CARD11 propagate signaling by nucleating Bcl10 polymerization in immune cells and are both held in an autoinhibited state prior to activation. Here, the authors combine structural, biochemical, and cell-based approaches to reveal the structural basis for CARD9/11 autoinhibition and show that the two proteins are activated through similar but distinct mechanisms.

    • Michael J. Holliday
    • Axel Witt
    • Wayne J. Fairbrother
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-17
  • Doa10/MARCHF6 is a conserved E3 ubiquitin ligase in the endoplasmic reticulum (ER) membrane in eukaryotes, but its molecular mechanism was unknown. The authors combine cryo-EM, computational and biochemical analyses to reveal how Doa10 recognizes its substrate proteins for ER-associated degradation.

    • Kevin Wu
    • Samuel Itskanov
    • Eunyong Park
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-18
  • Cryo-EM structures of human calcium-sensing receptor reveal intrinsic asymmetry in the receptor homodimer upon activation that is stabilized by calcimimetic drugs adopting distinct poses in the two protomers, priming one protomer for G-protein coupling.

    • Yang Gao
    • Michael J. Robertson
    • Georgios Skiniotis
    Research
    Nature
    Volume: 595, P: 455-459
  • iMARGI (in situ mapping of RNA–genome interactome) is a proximity ligation method for global profiling of chromatin-associated RNAs. A linker sequence bridges DNA and RNA in physical proximity, permitting sequencing library preparation and mapping of DNA–RNA contacts.

    • Weixin Wu
    • Zhangming Yan
    • Sheng Zhong
    Protocols
    Nature Protocols
    Volume: 14, P: 3243-3272
  • Transient receptor potential vanilloid channel 3 (TRPV3) responds to temperature and sensitizes upon repeated stimulation with either heat or agonists. Here authors present the cryo-EM structures of apo and sensitized human TRPV3 and describe the structural basis of sensitization.

    • Lejla Zubcevic
    • Mark A. Herzik Jr.
    • Seok-Yong Lee
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-12
  • This protocol describes solid-phase DNA-encoded library synthesis suitable for various high-throughput screening applications. The libraries are constructed using consecutive on-bead chemical synthesis and DNA encoding ligations, resulting in decodable library beads.

    • Anjali Dixit
    • Brian M. Paegel
    Protocols
    Nature Protocols
    P: 1-40
  • Fluorescent protein reporters based on GFP exist, but have intrinsic disadvantages. Here the authors incorporate pH, Ca2+ and protein–protein interaction sensing modalities into de novo designed mini-fluorescence-activating proteins (mFAPs), with increased photostability and smaller size, which bind a range of DFHBI chromophore variants.

    • Jason C. Klima
    • Lindsey A. Doyle
    • David Baker
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-19
  • SARS-CoV-2 spike-directed, non-neutralizing antibodies were converted into broad-spectrum inhibitors by conjugation to the SARS-CoV-2 receptor, ACE2, resulting in fusion proteins that target all SARS-CoV-2 variants of concern tested.

    • Payton A.-B. Weidenbacher
    • Eric Waltari
    • Peter S. Kim
    ResearchOpen Access
    Nature Chemical Biology
    Volume: 18, P: 1270-1276
  • TWIK1 is a pH-gated K + channel highly expressed in brain and heart that contributes to cardiac rhythm and insulin release. Here, Turney et al. use cryo-EM and electrophysiology to show how TWIK1 gates closed in response to lowered pH through conformational changes centered at the selectivity filter.

    • Toby S. Turney
    • Vivian Li
    • Stephen G. Brohawn
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-9
  • δ-Opioid receptors (δOR) are promising targets for pain management with reduced side effects. Here, the authors use a structure-based approach to design and characterize C6-Quino, a selective δOR partial agonist, highlighting its potential therapeutic relevance.

    • Balazs R. Varga
    • Sarah M. Bernhard
    • Tao Che
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Liu, Zhang, Yao et al. report that IRE1 α clustering, known to be part of the unfolded protein response, is membrane-bound phase separation and that IRE1 can coalesce with the phase-separated stress granules.

    • Songzi Liu
    • Xiaoge Zhang
    • Yong Liu
    Research
    Nature Cell Biology
    Volume: 26, P: 917-931
  • Lipin/Pah phosphatidic acid phosphatases generate diacylglycerol to regulate triglyceride synthesis and cellular signaling. Here authors determine structures of Tetrahymena thermophila Pah2 and identify an N-terminal amphipathic helix essential for membrane association.

    • Valerie I. Khayyo
    • Reece M. Hoffmann
    • Michael V. Airola
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-11
  • PGAM5 is a mitochondrial protein phosphatase whose functions include regulation of mitophagy and cell death. Here, the authors use x-ray crystallography and EM to show that PGAM5 forms dodecameric rings and filaments in solution, and find that PGAM5 rings are essential for catalysis and for a structural effect PGAM5 has on mitochondrial membranes, independently of catalytic activity.

    • Karen Ruiz
    • Tarjani M. Thaker
    • Natalia Jura
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-16
  • Deubiquitinases are proteases that cleave after the C-terminus of ubiquitin to hydrolyze ubiquitin chains and cleave ubiquitin from substrates. Here the authors describe a reactive-site-centric chemoproteomics approach to studying deubiquitinase activity, and expand the repertoire of known deubiquitinases.

    • David S. Hewings
    • Johanna Heideker
    • Ingrid E. Wertz
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-17
  • Andre Berndt and colleagues introduce a machine learning approach to enhance the biophysical characteristics of genetically encoded fluorescent indicators, deriving and testing in vitro new GCaMP mutations that surpass the performance of existing fast GCaMP indicators.

    • Sarah J. Wait
    • Marc Expòsit
    • Andre Berndt
    Research
    Nature Computational Science
    Volume: 4, P: 224-236
  • Optical contrast agents using AND-gate logic enhance the specificity and sensitivity of fluorescence-guided imaging in the resection of tumours and in the detection of metastases in mouse models of cancer.

    • John C. Widen
    • Martina Tholen
    • Matthew Bogyo
    Research
    Nature Biomedical Engineering
    Volume: 5, P: 264-277
  • Antisense oligonucleotide (ASO) cellular activity requires endosomal escape. Here, the authors show that disrupting Golgi-endosome protein AP1M1 enhances ASO activity by prolonging ASO endosomal residence and increasing the likelihood of endosomal escape.

    • Liza Malong
    • Jessica Roskosch
    • Filip Roudnicky
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-21
  • Human acetyltransferases MOZ and MORF mediate development programs and are dysregulated in diseases. Here the authors identified two winged helix (WH) domains in MORF/MOZ and characterized their DNA binding functions, including targeting of CpG by WH1.

    • Dustin C. Becht
    • Brianna J. Klein
    • Tatiana G. Kutateladze
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-20
  • A single-molecule forced unfolding of E. coli chloride transporter ClC-ec1 shows that the N- and C-terminal halves of the protein unfold independently, with exposed polar surfaces stabilized by membrane lipid head groups and water.

    • Duyoung Min
    • Robert E. Jefferson
    • James U. Bowie
    Research
    Nature Chemical Biology
    Volume: 14, P: 489-496
  • The opioid antidote naloxone used to treat opioid overdoses has a short duration of action requiring repeated doses. Here the authors develop an extended release naloxone prodrug delivery system and report the preclinical testing in rat and cynomolgus monkey models.

    • Hala Aldawod
    • Arjun D. Patel
    • Mamoun M. Alhamadsheh
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Enfortumab vedotin (EV) is the current standard treatment for advanced bladder cancer, but resistance typically develops within a year, highlighting the need for new therapies. This study demonstrates that NECTIN4-targeting CAR T cells are effective against bladder cancer, including EV-resistant cells, and their potency can be further enhanced by using rosiglitazone to boost NECTIN4 expression.

    • Kevin Chang
    • Henry M. Delavan
    • Jonathan Chou
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Cryo-EM reveals an asymmetric bacterial photosynthetic supercomplex built upon a homodimeric reaction center core. The structure provides mechanistic insights into light excitation transfer and a possible evolutionary transition intermediate of photosynthetic machinery.

    • Ryan Puskar
    • Chloe Du Truong
    • Po-Lin Chiu
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-12
  • Flycatcher1 (FLYC1) is a candidate mechanosensitive channel involved in Venus flytrap touch-induced prey capture. Here, the authors report structural and functional details of FLYC1, with insights into gating conformational transitions.

    • Sebastian Jojoa-Cruz
    • Kei Saotome
    • Andrew B. Ward
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-11
  • Ryanodine Receptor type 3 mediates ER Ca2+ release in different cell types. Here, the authors use cryo-EM to reveal a binding site for chloride and two distinct sites for ATP. Epileptic encephalopathy mutations are predicted to perturb its function.

    • Yu Seby Chen
    • Maricela Garcia-Castañeda
    • Filip Van Petegem
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • Using cryo-EM, Karasmanis, Reimer, and Kendrick et al. reveal a Lis1-mediated dynein dimer, termed Chi, that serves as intermediate state in relieving dynein’s autoinhibition.

    • Eva P. Karasmanis
    • Janice M. Reimer
    • Andres E. Leschziner
    ResearchOpen Access
    Nature Structural & Molecular Biology
    Volume: 30, P: 1357-1364