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Showing 1–50 of 226 results
Advanced filters: Author: Amy Y. Zhao Clear advanced filters
  • Spatial transcriptomics analyses often lose a substantial fraction of molecular signals because standard cell segmentation and deconvolution methods fail to capture expression from fragile cell types, subcellular structures, or extracellular regions. This study introduces RESCUE, a computational approach that recovers these unattributed spatial expression patterns, revealing biologically meaningful signals across diverse datasets and enabling more complete and accurate tissue interpretation.

    • Young Joo Lee
    • Seokjin Yeo
    • Sihai Dave Zhao
    ResearchOpen Access
    Nature Communications
    P: 1-15
  • Atopic dermatitis is an immune disease driven by cytokines including IL-4/IL-13. This study shows that a topical ITK/TRK inhibitor blocks an array of T cell cytokines, inhibits NGF-induced basophil activation, and reduces inflammation in human skin explants and dermatitis models, indicating therapeutic potential.

    • Jennifer L. Duffen
    • Kimberly K. Crouse
    • Michael J. Primiano
    ResearchOpen Access
    Nature Communications
    P: 1-16
  • An analysis of 24,202 critical cases of COVID-19 identifies potentially druggable targets in inflammatory signalling (JAK1), monocyte–macrophage activation and endothelial permeability (PDE4A), immunometabolism (SLC2A5 and AK5), and host factors required for viral entry and replication (TMPRSS2 and RAB2A).

    • Erola Pairo-Castineira
    • Konrad Rawlik
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 617, P: 764-768
  • A large genome-wide association study of more than 5 million individuals reveals that 12,111 single-nucleotide polymorphisms account for nearly all the heritability of height attributable to common genetic variants.

    • Loïc Yengo
    • Sailaja Vedantam
    • Joel N. Hirschhorn
    ResearchOpen Access
    Nature
    Volume: 610, P: 704-712
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477
  • A genome-wide association meta-analysis study of blood lipid levels in roughly 1.6 million individuals demonstrates the gain of power attained when diverse ancestries are included to improve fine-mapping and polygenic score generation, with gains in locus discovery related to sample size.

    • Sarah E. Graham
    • Shoa L. Clarke
    • Cristen J. Willer
    Research
    Nature
    Volume: 600, P: 675-679
  • Inbreeding depression has been observed in many different species, but in humans a systematic analysis has been difficult so far. Here, analysing more than 1.3 million individuals, the authors show that a genomic inbreeding coefficient (FROH) is associated with disadvantageous outcomes in 32 out of 100 traits tested.

    • David W Clark
    • Yukinori Okada
    • James F Wilson
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-17
  • Whole-genome sequencing, transcriptome-wide association and fine-mapping analyses in over 7,000 individuals with critical COVID-19 are used to identify 16 independent variants that are associated with severe illness in COVID-19.

    • Athanasios Kousathanas
    • Erola Pairo-Castineira
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 607, P: 97-103
  • Materials popular for insulation and noise reduction are typically derived from petroleum or minerals or have other environmental costs. This study reports a scalable material for thermal insulation and noise reduction derived from treated wood.

    • Xinpeng Zhao
    • Yu Liu
    • Liangbing Hu
    Research
    Nature Sustainability
    Volume: 6, P: 306-315
  • cfDNA fragmentomics is a potential clinically applicable method for identifying cancer. Here, the authors assess fragmentomics analysis methods and their application to commercial targeted sequencing panels.

    • Kyle T. Helzer
    • Marina N. Sharifi
    • Shuang G. Zhao
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • TRPC3 regulates neuronal excitability via its constitutive activity. Using MD simulations and patch clamp techniques, Clarke et al. show that PIP2 controls TRPC3 via a salt bridge formed between the TRP helix and the S4-S5 linker, affecting both stimulated and constitutive TRPC3 activities.

    • Amy Clarke
    • Julia Skerjanz
    • Oleksandra Tiapko
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • How changes in species’ native occupancy over time relate to global naturalization success remains unclear. Here, the authors show that species with both high occupancy decades ago and increasing native occupancy ever since are more likely to become naturalized elsewhere.

    • Rashmi Paudel
    • Trevor S. Fristoe
    • Mark van Kleunen
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • C4 photosynthesis serves as a prominent example of convergent evolution in complex traits. Here, the authors construct chromosome-scale genome assemblies for five Flaveria species and investigate the genomic evolution of C4 photosynthesis. Their findings emphasize the roles of retrotransposition and transcriptional regulation in shaping C4 traits.

    • Ming-Ju Amy Lyu
    • Huilong Du
    • Xin-Guang Zhu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • A genome-wide association study and Metabochip meta-analysis of body mass index (BMI) detects 97 BMI-associated loci, of which 56 were novel, and many loci have effects on other metabolic phenotypes; pathway analyses implicate the central nervous system in obesity susceptibility and new pathways such as those related to synaptic function, energy metabolism, lipid biology and adipogenesis.

    • Adam E. Locke
    • Bratati Kahali
    • Elizabeth K. Speliotes
    Research
    Nature
    Volume: 518, P: 197-206
  • Wastewater-based surveillance tends to focus on specific pathogens. Here, the authors mapped the wastewater virome from 62 cities worldwide to identify over 2,500 viruses, revealing city-specific virome fingerprints and showing that wastewater metagenomics enables early detection of emerging viruses.

    • Nathalie Worp
    • David F. Nieuwenhuijse
    • Miranda de Graaf
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • Chromatin heterogeneity in the cell nucleus modulates the size, mobility, and formation of biomolecular condensates; decreasing chromatin heterogeneity correlates with decreased mobility of both endogenous and engineered condensates, revealing a key role for nuclear organization in cellular function.

    • Jing Xia
    • Jessica Z. Zhao
    • Clifford P. Brangwynne
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Genome-wide association meta-analyses of waist-to-hip ratio adjusted for body mass index in more than 224,000 individuals identify 49 loci, 33 of which are new and many showing significant sexual dimorphism with a stronger effect in women; pathway analyses implicate adipogenesis, angiogenesis, transcriptional regulation and insulin resistance as processes affecting fat distribution.

    • Dmitry Shungin
    • Thomas W. Winkler
    • Karen L Mohlke
    Research
    Nature
    Volume: 518, P: 187-196
  • APOBEC mutational signatures are commonly found in multiple cancer types. Here, the authors utilize multi-omics analyses to reveal that the cooccurrence of APOBEC associated mutagenesis and tobacco-smoking-related mutations affects lung tumor evolution and age at onset of lung cancer from smokers.

    • Tongwu Zhang
    • Jian Sang
    • Maria Teresa Landi
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Patricia Munroe, Christopher Newton-Cheh, Andrew Morris and colleagues perform association studies in over 340,000 individuals of European ancestry and identify 66 loci, of which 17 are novel, involved in blood pressure regulation. The risk SNPs are enriched for cis-regulatory elements, particularly in vascular endothelial cells.

    • Georg B Ehret
    • Teresa Ferreira
    • Patricia B Munroe
    Research
    Nature Genetics
    Volume: 48, P: 1171-1184
  • GWAS have identified more than 500 genetic loci associated with blood lipid levels. Here, the authors report a genome-wide analysis of interactions between genetic markers and physical activity, and find that physical activity modifies the effects of four genetic loci on HDL or LDL cholesterol.

    • Tuomas O. Kilpeläinen
    • Amy R. Bentley
    • Ruth J. F. Loos
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • A millimetre-scale bioresorbable optoelectronic system with an onboard power supply and a wireless, optical control mechanism is developed for general applications in electrotherapy and specific uses in temporary cardiac pacing.

    • Yamin Zhang
    • Eric Rytkin
    • John A. Rogers
    Research
    Nature
    Volume: 640, P: 77-86
  • Meta-analysis of genome-wide association studies on Alzheimer’s disease and related dementias identifies new loci and enables generation of a new genetic risk score associated with the risk of future Alzheimer’s disease and dementia.

    • Céline Bellenguez
    • Fahri Küçükali
    • Jean-Charles Lambert
    ResearchOpen Access
    Nature Genetics
    Volume: 54, P: 412-436
  • A multi-ancestry genome-wide association study for age at menarche followed by fine mapping and downstream analysis implicates 665 pubertal timing genes, such as the G-protein-coupled receptor 83 (GPR83) and other genes expressed in the ovaries involved in the DNA damage response.

    • Katherine A. Kentistou
    • Lena R. Kaisinger
    • Ken K. Ong
    ResearchOpen Access
    Nature Genetics
    Volume: 56, P: 1397-1411
  • SARS-CoV-2 infection can lead to progressive pathology in patients with COVID-19, but information for this disease progression is sparse. Here the authors use multi-omics approach to profile the immune responses of patients, assessing immune repertoire and effects of tocilizumab treatments, to find a dyssynchrony between innate and adaptive immunity in progressive COVID-19.

    • Avraham Unterman
    • Tomokazu S. Sumida
    • Charles S. Dela Cruz
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-23
  • Multi-ancestry meta-analyses of genome-wide association studies for self-reported physical activity during leisure time, leisure screen time, sedentary commuting and sedentary behavior at work identify 99 loci associated with at least one of these traits.

    • Zhe Wang
    • Andrew Emmerich
    • Marcel den Hoed
    ResearchOpen Access
    Nature Genetics
    Volume: 54, P: 1332-1344
  • Analysis of 97,691 high-coverage human blood DNA-derived whole-genome sequences enabled simultaneous identification of germline and somatic mutations that predispose individuals to clonal expansion of haematopoietic stem cells, indicating that both inherited and acquired mutations are linked to age-related cancers and coronary heart disease.

    • Alexander G. Bick
    • Joshua S. Weinstock
    • Pradeep Natarajan
    Research
    Nature
    Volume: 586, P: 763-768
  • Genome-wide ancient DNA data from individuals from the Middle Bronze Age to Iron Age documents large-scale movement of people from the European continent between 1300 and 800 bc that was probably responsible for spreading early Celtic languages to Britain.

    • Nick Patterson
    • Michael Isakov
    • David Reich
    Research
    Nature
    Volume: 601, P: 588-594
  • The geography of deep-ocean mixing driven by internal tides is poorly constrained in ocean models. Here the authors unveil the global variability of energetic small-scale internal tides, combining an analytical model with satellite and in situ observations, paving the way to future parameterisations.

    • Clément Vic
    • Alberto C. Naveira Garabato
    • Gordon R. Stephenson
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-9
  • Describing changes in the timing of life history events is critical to understanding effects of climate change. Wang et al. relocated plant communities up and down elevation gradients and found that warming lengthened the reproductive and activity phases, while cooling reduced the vegetative and reproductive phases.

    • Xine Li
    • Lili Jiang
    • Guojie Wang
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-8
  • Neurodevelopmental disorders (NDDs) are a heterogeneous group of diseases for which the genetic basis is still unknown in more than half of the cases. Here, the authors report a NDD associated with disruptive variants in the TANC2 gene and show that rols, the TANC2 homolog in flies, is required for synapse growth and function.

    • Hui Guo
    • Elisa Bettella
    • Evan E. Eichler
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-17
  • A cell-based phenotypic screen identifying inhibitors of Notch signaling led to the discovery of NVS-ZP7-4, which blocks the activity of the zinc transporter SLC39a7 (ZIP7) and induces cell death through an ER stress mechanism.

    • Erin Nolin
    • Sara Gans
    • Christy J. Fryer
    Research
    Nature Chemical Biology
    Volume: 15, P: 179-188
  • Comparison of intermittent fasting plus early time-restricted eating (iTRE) to calorie restriction, as well as standard care, in adults at risk of type 2 diabetes in a three-arm randomized controlled study demonstrated that iTRE was associated with greater improvements in postprandial glucose metabolism at 6 months.

    • Xiao Tong Teong
    • Kai Liu
    • Leonie K. Heilbronn
    Research
    Nature Medicine
    Volume: 29, P: 963-972
  • Whole-genome sequencing of lung cancer in never smokers identifies different copy number subtypes and shows a lack of tobacco smoking signatures, even in cases exposed to secondhand smoke.

    • Tongwu Zhang
    • Philippe Joubert
    • Maria Teresa Landi
    Research
    Nature Genetics
    Volume: 53, P: 1348-1359