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Showing 1–50 of 171 results
Advanced filters: Author: Brandon L. Pierce Clear advanced filters
  • Telomere length varies across chromosome arms, but most studies measure only averages. Here, the authors use long‑read sequencing in >2,500 participants to map chromosome‑specific lengths, showing arm‑level variation, strong individual differences, and associations with aging and disease.

    • Niyati Jain
    • Jiajun Luo
    • Brandon L. Pierce
    ResearchOpen Access
    Nature Communications
    P: 1-15
  • The activity of the membrane-bound enzyme pMMO depends on copper but the location of the copper centers is still under debate. Here, the authors reconstitute pMMO in nanodiscs and use native top-down MS to localize its copper centers, providing insights into which sites are essential for activity.

    • Soo Y. Ro
    • Luis F. Schachner
    • Amy C. Rosenzweig
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-12
  • Despite improving therapeutic options, the prognosis for patients with metastatic castration-resistance prostate cancer (mCRPC) remains poor. Here, the authors identify MCL1 copy number alterations as a prognostic and predictive biomarker, demonstrating its therapeutic potential as a drug target, either alone or in combination, in patients with mCRPC.

    • Juan M. Jiménez-Vacas
    • Daniel Westaby
    • Adam Sharp
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-22
  • Longitudinal metatranscriptomics in a prospective cohort of 1,164 adults hospitalized for COVID-19 reveals that azithromycin offered no apparent anti-inflammatory benefit but enriched the respiratory microbiome with potential pathogens and antimicrobial resistance genes.

    • Abigail Glascock
    • Cole Maguire
    • Charles R. Langelier
    ResearchOpen Access
    Nature Microbiology
    P: 1-13
  • After spinal cord injury, lesion-remote astrocytes acquire heterogeneous, spatially restricted reactivity states that shape neuroinflammation, neural repair and neurological recovery.

    • Sarah McCallum
    • Keshav B. Suresh
    • Joshua E. Burda
    ResearchOpen Access
    Nature
    Volume: 649, P: 959-970
  • Insufficient AHR activation has been suggested in SLE, and augmenting AHR activation therapeutically may prevent CXCL13+ TPH/TFH differentiation and the subsequent recruitment of B cells and formation of lymphoid aggregates in inflamed tissues.

    • Calvin Law
    • Vanessa Sue Wacleche
    • Deepak A. Rao
    Research
    Nature
    Volume: 631, P: 857-866
  • Precise editing of DNA methylation has emerged as a promising tool in disease biology but most applications are limited to in vitro systems. Here, we develop two transgenic mouse lines harboring an inducible dCas9-DNMT3A or dCas9-TET1 editor to enable tissue-specific DNA methylation editing in vivo.

    • Richard Pan
    • Jingwei Ren
    • X. Shawn Liu
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-14
  • Establishment and maintenance of appropriate cell size is a prerequisite for cells to function efficiently. Here, Kiriakopulos et al. reveal that the lncRNA CISTR-ACT maintains cell size across cell types in humans and mice by regulating cell morphogenesis genes in trans via guidance of the transcription factor FOSL2.

    • Katerina Kiriakopulos
    • Katty Soleimanpour
    • Philipp G. Maass
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-19
  • Whether and how prefrontal astrocyte Ca2+ signaling modulates different neuronal populations in aiding or inhibiting anxiety-like behavior remains not fully understood. Here authors show that prefrontal astrocytes encode anxiogenic cues and modulate excitatory and inhibitory neurons differently. Silencing prefrontal astrocytes heightens anxiety-like behavior and induces proteomic changes in astrocytes and neurons.

    • Eunyoung Kim
    • Hairuo Du
    • Xinzhu Yu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • Williams et al. report a growth arrest mechanism in residual cancer persister cells through targeted therapy-induced upregulation of type I interferon signalling, which is negatively regulated by apoptotic DNA endonuclease DFFB to allow tumour relapse.

    • August F. Williams
    • David A. G. Gervasio
    • Matthew J. Hangauer
    ResearchOpen Access
    Nature Cell Biology
    Volume: 27, P: 2143-2151
  • Lysosomal storage diseases like mucopolysaccharidosis type I (MPS I) cause pathology before birth and result in early morbidity and mortality. Here, the authors show that in utero base editing mediates multi-organ phenotypic and survival benefits in a mouse model recapitulating a common human MPSI mutation.

    • Sourav K. Bose
    • Brandon M. White
    • William H. Peranteau
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-16
  • An approach combining bioorthogonal chemistry with genetically encoded fluorogen-activating proteins enables subcellular imaging of phospholipids and glycans, as well as the visualization of lipid transport between organelles and lipid asymmetry across membrane leaflets.

    • William M. Moore
    • Roberto J. Brea
    • Itay Budin
    Research
    Nature Chemical Biology
    Volume: 22, P: 128-139
  • Despite being an important driver of a subset of medulloblastomas, efforts to therapeutically target Sonic Hedgehog (SHH) signaling, such as with the use of Smoothened (SMO) inhibitors, have had limited success. Here, the authors find that SHH medulloblastomas are sensitive to netrin-1 inhibition and investigate netrin-1 as a mechanism of resistance to SMO inhibition.

    • Julie Talbot
    • Joanna Fombonne
    • Olivier Ayrault
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • Multiferroic BiFeO3 is promising for applications where electric and magnetic fields need to be coupled, for example, in magnetic data storage. Here, combining theory and experiment the authors provide a microscopic insight into the switching of magnetization by electric fields in BiFeO3.

    • Ziyao Zhou
    • Morgan Trassin
    • Nian X. Sun
    Research
    Nature Communications
    Volume: 6, P: 1-7
  • Glycolysis is elevated in many cancers. In this study, the authors show that lactoylglutathione, a by-product of methylglyoxal produced from increased glycolysis, is elevated in lung cancer in mouse models and humans, arguing reactive metabolite production can be a liability for cancers.

    • Alba Luengo
    • Keene L. Abbott
    • Matthew G. Vander Heiden
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • Development of a biosensor for GPCR trafficking to the lysosome combined with a genome-wide CRISPR screen identified DNAJC13 as a critical regulator of agonist-induced trafficking of the δ-opioid receptor to the lysosome.

    • Brandon Novy
    • Aleksandra Dagunts
    • Braden T. Lobingier
    Research
    Nature Chemical Biology
    Volume: 21, P: 360-370
  • Apicomplexan parasites share complex cell pellicular structures that isolates the cytosol from most of the plasma membrane. Koreny et al show that, as an early adaptation to this barrier, dedicated stable endocytic structures occur at select sites in these cells. In Toxoplasma, plasma membrane homeostasis is particularly dependent on endocytosis.

    • Ludek Koreny
    • Brandon N. Mercado-Saavedra
    • Ross F. Waller
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-19
  • GvpU regulates spatial organization of gas vesicles in the bacterial cytosol through tunable interactions with the core gas vesicle shell protein and phase transition, enabling future opportunities for engineering of cellular buoyancy.

    • Zongru Li
    • Qionghua Shen
    • George J. Lu
    Research
    Nature Microbiology
    Volume: 9, P: 1021-1035
  • Osteocytes are mechanoresponsive within skeletal tissue. Here, the authors show that class IIa histone deacetylases are phosphorylated by focal adhesion kinase, suggesting that HDAC5 may propagate mechanobiological cues to regulate cell type-specific gene expression.

    • Tadatoshi Sato
    • Shiv Verma
    • Marc N. Wein
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-18
  • A study presents a cross-species proteomic map of synapse development in neocortex and reveals that the human postsynaptic density assembly develops two to three times slower than that in macaques and mice.

    • Li Wang
    • Kaifang Pang
    • Arnold R. Kriegstein
    Research
    Nature
    Volume: 622, P: 112-119
  • Perivascular and leptomeningeal macrophages, collectively termed here parenchymal border macrophages, are shown to regulate flow dynamics of cerebrospinal fluid, implicating this cell population as new therapeutic targets in neurological diseases such as Alzheimer’s.

    • Antoine Drieu
    • Siling Du
    • Jonathan Kipnis
    Research
    Nature
    Volume: 611, P: 585-593
  • Kucharska, Ivanochko and Hailemariam and colleagues solved cryo-EM structures of Pfs48/45, needed for Plasmodium falciparum development, with potent antibodies. The work revealed conformational epitopes, with implications for design of therapies against malaria.

    • Iga Kucharska
    • Danton Ivanochko
    • Jean-Philippe Julien
    ResearchOpen Access
    Nature Structural & Molecular Biology
    Volume: 32, P: 1396-1407
  • B cells need at least two signals to terminally differentiate into antibody-secreting cells. Pierce and colleagues show that persistent exposure to antigen in the absence of T cell help or ‘pathogen pattern motifs’ leads to B cell death via a calcium-dependent ‘metabolic timer’.

    • Munir Akkaya
    • Javier Traba
    • Susan K. Pierce
    Research
    Nature Immunology
    Volume: 19, P: 871-884
  • Disruption of autophagy function in cellular and animal models of tauopathy increases tau aggregation. Here, the authors describe a small-molecule screen to identify compounds that promote autophagy clearance of tau and rescue disease-relevant phenotypes in tauopathy patient-derived neurons.

    • M. Catarina Silva
    • Ghata A. Nandi
    • Stephen J. Haggarty
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-18
  • Fibrin drives inflammation and neuropathology in SARS-CoV-2 infection, and fibrin-targeting immunotherapy may represent a therapeutic intervention for patients with long COVID.

    • Jae Kyu Ryu
    • Zhaoqi Yan
    • Katerina Akassoglou
    ResearchOpen Access
    Nature
    Volume: 633, P: 905-913
  • An extracorporeal cross-circulation approach enables, in a swine model, 36 hours of normothermic perfusion in healthy lungs, the recovery of injured lungs, and extended therapeutic interventions in all lungs.

    • John D. O’Neill
    • Brandon A. Guenthart
    • Gordana Vunjak-Novakovic
    Research
    Nature Biomedical Engineering
    Volume: 1, P: 1-15
  • Gastric aspiration severely injures donor lungs, frequently making them unacceptable for transplantation. Here the authors show that an interventional cross-circulation platform enables the regeneration of severely damaged lungs in a swine model of gastric aspiration injury.

    • Brandon A. Guenthart
    • John D. O’Neill
    • Matthew Bacchetta
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-16
  • A proteomics and computational approach was developed to map the proximal proteome of the activated μ-opioid receptor and to extract subcellular location, trafficking and functional partners of G-protein-coupled receptor activity.

    • Benjamin J. Polacco
    • Braden T. Lobingier
    • Ruth Hüttenhain
    Research
    Nature Chemical Biology
    Volume: 20, P: 1133-1143
  • Iterative Synthetically Phosphorylated Isomers (iSPI) is a proteome-scale library of human-derived phosphoserine-containing phosphopeptides with precisely known positions of phosphorylation. This multi-purpose resource is available for optimization, standardization, and benchmarking of key steps in phosphoproteomics workflows.

    • Brandon M. Gassaway
    • Jiaming Li
    • Steven P. Gygi
    Research
    Nature Methods
    Volume: 19, P: 1371-1375
  • Beta-arrestins play central roles in the mechanisms regulating GPCR signalling and trafficking. Here the authors identify a selective inhibitor of the interaction between β-arrestin and the β2-adaptin subunit of the clathrin adaptor protein AP-2, which they use to dissect the role of the β-arrestin/β2-adaptin interaction in GPCR signalling.

    • Alexandre Beautrait
    • Justine S. Paradis
    • Michel Bouvier
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-16
  • Here the authors perform a trans expression quantitative trait locus meta-analysis study of over 3,700 people and link a USP18 variant to expression of 50 inflammation genes and lupus risk, highlighting how genetic regulation of immune responses drives autoimmune disease and informs new therapies.

    • Krista Freimann
    • Anneke Brümmer
    • Kaur Alasoo
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Rodeheffer and colleagues show that a high-fat diet in mice activates Akt2 signalling in adipocyte precursors within white adipose tissue deposits, leading to their proliferation and differentiation into adipocytes, and to obesity.

    • Elise Jeffery
    • Christopher D. Church
    • Matthew S. Rodeheffer
    Research
    Nature Cell Biology
    Volume: 17, P: 376-385
  • The presentation of antigen by germinal-center B cells to follicular T cells engenders the process of antibody affinity maturation and humoral memory. Pierce and colleagues show that TLR9 signaling in B cells antagonizes B cell–mediated antigen presentation, which leads to the enhanced generation of short-lived plasma cells and the production of lower-affinity antibodies.

    • Munir Akkaya
    • Billur Akkaya
    • Susan K. Pierce
    Research
    Nature Immunology
    Volume: 19, P: 255-266
  • A screen of nutrient-derived compounds identified trans-vaccenic acid as a promoter of effector T cell function, and functional assays demonstrate that this occurs via inactivation of GPR43 on T cells.

    • Hao Fan
    • Siyuan Xia
    • Jing Chen
    ResearchOpen Access
    Nature
    Volume: 623, P: 1034-1043