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Showing 1–50 of 193 results
Advanced filters: Author: J W Ruan Clear advanced filters
  • Many discrepancies exist to question the nature of the candidate topological Kondo insulator, SmB6. Here, Jiao et al. observe in-gap states on well characterized (001) surfaces of SmB6, indicating a suppression of the Kondo effect at surface, which reconciles current discrepancies on this compound.

    • L. Jiao
    • S. Rößler
    • S. Wirth
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-6
  • The 4D Nucleome Project demonstrates the use of genomic assays and computational methods to measure genome folding and then predict genomic structure from DNA sequence, facilitating the discovery of potential effects of genetic variants, including variants associated with disease, on genome structure and function.

    • Job Dekker
    • Betul Akgol Oksuz
    • Feng Yue
    ResearchOpen Access
    Nature
    Volume: 649, P: 759-776
  • TRPM5 activation requires Ca2+ binding at an S1–S4 pocket in the transmembrane domain (TMD) and a modulatory site in the intracellular domain (ICD). Structural and functional analyses of TRPM5 with Ca2+, the agonist CBTA and the inhibitor triphenylphosphine oxide—all engaging the S1–S4 pocket—reveal how modulation of channel activity is communicated across the TMD and ICD.

    • Zheng Ruan
    • Junuk Lee
    • Wei Lü
    ResearchOpen Access
    Nature Chemical Biology
    P: 1-9
  • ATP release through large-pore channels is essential for cell communication. Here, the authors reveal how structural flexibility in the PANX1 pore enables selective passage of molecules like ATP and identify mefloquine as a positive modulator acting through a newly identified binding site.

    • Yangyang Li
    • Zheng Ruan
    • Wei Lü
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • A pair of phase 1 trials evaluating antibody–drug conjugates identify potential strategies to treat advanced gastroesophageal cancers and highlight the rapid expansion of claudin18.2-targeting drug development in solid tumors.

    • Samuel J. Klempner
    • Raghav Sundar
    News & Views
    Nature Medicine
    Volume: 31, P: 2861-2862
  • How cells respond to replication-derived DNA damage that is carried over into mitosis is not well understood. Here, the authors show that CIP2A with TOPBP1 mediates the mitotic recruitment of the SLX4/MUS81/XPF nuclease complex to replication stress-induced DNA lesions to maintain genome integrity.

    • Lauren de Haan
    • Sietse J. Dijt
    • Marcel A. T. M. van Vugt
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-16
  • Current parathyroid hormone (PTH) peptides have limited efficacy due to rapid clearance and short receptor binding. Here, the authors show that lipidation strategies can extend circulation time and receptor engagement, enhancing PTH peptide efficacy in vitro and in vivo

    • Jakob Höppner
    • Hiroshi Noda
    • Thomas J. Gardella
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Thermal lepton pairs are ideal probes for the temperature of quark-gluon plasma. Here, the STAR Collaboration uses thermal electron-positron pair production to measure quark-gluon plasma average temperature at different stages of the evolution.

    • B. E. Aboona
    • J. Adam
    • M. Zyzak
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • The receptor-like kinase NIK1 is phosphorylated in response to multiple biotic and abiotic signals, activating the NIK1/RPL10/LIMYB signaling circuit, which coordinately regulates translation and photosynthesis in response to environmental changes.

    • Marco Aurélio Ferreira
    • Ruan M. Teixeira
    • Elizabeth P. B. Fontes
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • A new artificial intelligence model, DeepSeek-R1, is introduced, demonstrating that the reasoning abilities of large language models can be incentivized through pure reinforcement learning, removing the need for human-annotated demonstrations.

    • Daya Guo
    • Dejian Yang
    • Zhen Zhang
    ResearchOpen Access
    Nature
    Volume: 645, P: 633-638
  • The ATLAS Collaboration reports the observation of the electroweak production of two jets and a Z-boson pair. This process is related to vector-boson scattering and allows the nature of electroweak symmetry breaking to be probed.

    • G. Aad
    • B. Abbott
    • L. Zwalinski
    ResearchOpen Access
    Nature Physics
    Volume: 19, P: 237-253
  • While Bell inequalities have been violated several times—mostly in photonic systems—their violations within particle physics experiments are less explored. Here, the BESIII Collaboration showcases Bell-violating nonlocal correlations between entangled hyperon pairs.

    • M. Ablikim
    • M. N. Achasov
    • J. Zu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • Although protein language models have enabled major advances, they often rely on indirect signals that may not fully capture functional relevance. Fine-tuning these models on textual annotations is shown to improve their performance on function prediction tasks.

    • Haonan Duan
    • Marta Skreta
    • Chris J. Maddison
    Research
    Nature Machine Intelligence
    Volume: 7, P: 1403-1413
  • PRS-CSx is a polygenic risk score construction method that improves cross-population polygenic prediction by integrating GWAS summary statistics from multiple populations.

    • Yunfeng Ruan
    • Yen-Feng Lin
    • Tian Ge
    Research
    Nature Genetics
    Volume: 54, P: 573-580
  • This overview of the ENCODE project outlines the data accumulated so far, revealing that 80% of the human genome now has at least one biochemical function assigned to it; the newly identified functional elements should aid the interpretation of results of genome-wide association studies, as many correspond to sites of association with human disease.

    • Ian Dunham
    • Anshul Kundaje
    • Ewan Birney
    ResearchOpen Access
    Nature
    Volume: 489, P: 57-74
  • A description is given of the ENCODE effort to provide a complete catalogue of primary and processed RNAs found either in specific subcellular compartments or throughout the cell, revealing that three-quarters of the human genome can be transcribed, and providing a wealth of information on the range and levels of expression, localization, processing fates and modifications of known and previously unannotated RNAs.

    • Sarah Djebali
    • Carrie A. Davis
    • Thomas R. Gingeras
    ResearchOpen Access
    Nature
    Volume: 489, P: 101-108
  • Janus graphene nanoribbons with localized states on a single zigzag edge are fabricated by introducing a topological defect array of benzene motifs on the opposite zigzag edge, to break the structural symmetry.

    • Shaotang Song
    • Yu Teng
    • Jiong Lu
    Research
    Nature
    Volume: 637, P: 580-586
  • The collective-flow-assisted nuclear shape-imaging method images the nuclear global shape by colliding them at ultrarelativistic speeds and analysing the collective response of outgoing debris.

    • M. I. Abdulhamid
    • B. E. Aboona
    • M. Zyzak
    ResearchOpen Access
    Nature
    Volume: 635, P: 67-72
  • Investigating the inner structure of baryons is important to further our understanding of the strong interaction. Here, the BESIII Collaboration extracts the absolute value of the ratio of the electric to magnetic form factors and its relative phase for e + e − → J/ψ → ΛΣ decays, enhancing the signal thanks to the vacuum polarisation effect at the J/ψ peak.

    • M. Ablikim
    • M. N. Achasov
    • J. Zu
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-9
  • The impact of phage predation on spreading antimicrobial resistance is unclear in the context of its effects on microbial community spatial organization. Here, the authors show that phage predation can promote the spread of plasmid-encoded antibiotic resistance by increasing microbial spatial intermixing.

    • Chujin Ruan
    • Josep Ramoneda
    • David R. Johnson
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • The semileptonic decay channels of the Λc baryon can give important insights into weak interaction, but decay into a neutron, positron and electron neutrino has not been reported so far, due to difficulties in the final products’ identification. Here, the BESIII Collaboration reports its observation in e+e- collision data, exploiting machine-learning-based identification techniques.

    • M. Ablikim
    • M. N. Achasov
    • J. Zu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • What happens to correlated electronic phases—superconductivity and charge density wave ordering—as a material is thinned? Experiments show that both can remain intact in just a single layer of niobium diselenide.

    • Miguel M. Ugeda
    • Aaron J. Bradley
    • Michael F. Crommie
    Research
    Nature Physics
    Volume: 12, P: 92-97
  • Intrinsic resistance to tyrosine kinase inhibitor (TKI) drugs is limiting the progress of targeted cancer therapies. The efficacy of TKIs relies on their inhibition of oncogenic signaling but also on the induction of apoptosis in cancer cells, driven by activation of pro-apoptotic BIM proteins. The authors identify a germline BIM polymorphism common in East Asian individuals that switches BIM splicing, eliminating the BH3 domain responsible for apoptosis induction. The polymorphism provides resistance to TKIs, such as BCR-ABL inhibitors in chronic myeloid leukemia and EGFR inhibitors in non–small-cell lung cancer samples, and drug sensitivity can be reinstated by addition of BH3-mimetic drugs. The polymorphism predicts treatment responses and outcome in East Asian patients with leukemia and lung cancer and could provide useful guidance for therapeutic implementation.

    • King Pan Ng
    • Axel M Hillmer
    • S Tiong Ong
    Research
    Nature Medicine
    Volume: 18, P: 521-528
  • Natural gas is a widely used fossil fuel, but its extraction results in the venting of carbon dioxide to the atmosphere. Here, the authors demonstrate that nucleophilic porous carbons can store this carbon dioxide as a polymer, and that the polymerization requires lower pressures than previously observed.

    • Chih-Chau Hwang
    • Josiah J. Tour
    • James M. Tour
    Research
    Nature Communications
    Volume: 5, P: 1-7
  • Federated learning, a method for training artificial intelligence algorithms that protects data privacy, was used to predict future oxygen requirements of symptomatic patients with COVID-19 using data from 20 different institutes across the globe.

    • Ittai Dayan
    • Holger R. Roth
    • Quanzheng Li
    Research
    Nature Medicine
    Volume: 27, P: 1735-1743
  • Protein aggregation has been implicated in several neurodegenerative diseases. Here, Wu et al. utilized a general aggregate reporter to identify aggregation-prone proteins and discover that TDP43 aggregates at ER-exit sites (ERES) under proteotoxic stress and impairs ER-to-Golgi transport, linking TDP43 aggregation and ER dysfunction.

    • Hongyi Wu
    • Loo Chien Wang
    • Rong Li
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-22
  • In this Perspective, members of the Aging Biomarker Consortium outline the X-Age Project, an Aging Biomarker Consortium plan for building standardized aging clocks in China. The authors discuss the project roadmap and its aims of decoding aging heterogeneity, detecting accelerated aging early and evaluating geroprotective interventions.

    • Jiaming Li
    • Mengmeng Jiang
    • Guang-Hui Liu
    Reviews
    Nature Aging
    Volume: 5, P: 1669-1685
  • Many transcription factors bind to regulatory DNA elements that are distant from gene promoters. These distal binding sites are thought to regulate transcription through long-range chromatin interactions, but, until now, the impact of chromatin interactions on transcription regulation has not been investigated in a genome-wide manner. A new strategy — chromatin interaction analysis by paired-end tag sequencing — is now described for the de novo detection of global chromatin interactions.

    • Melissa J. Fullwood
    • Mei Hui Liu
    • Yijun Ruan
    Research
    Nature
    Volume: 462, P: 58-64
  • Direct ink writing of complex 3D gradient structures can be challenging due to inherent method limitations. Here, the authors report continuous diameter-adjustable filament by varying printing speed and height and enable extrusion 3D printers to produce complex gradient porous matters.

    • Huawei Qu
    • Chongjian Gao
    • Changshun Ruan
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • The measurement of the total cross-section of proton–proton collisions is of fundamental importance for particle physics. Here, the first measurement of the inelastic cross-section is presented for proton–proton collisions at an energy of 7 teraelectronvolts using the ATLAS detector at the Large Hadron Collider.

    • G. Aad
    • B. Abbott
    • L. Zwalinski
    ResearchOpen Access
    Nature Communications
    Volume: 2, P: 1-14
  • Dissection of the nuclear pore complex provides a model in which the HIV capsid enters the nucleus through karyopherin mimicry, a mechanism likely to be conserved across other viruses.

    • C. F. Dickson
    • S. Hertel
    • D. A. Jacques
    ResearchOpen Access
    Nature
    Volume: 626, P: 836-842
  • In this study, Uldrich and colleagues describe the crystal structure of the Vγ9Vδ2 T cell antigen receptor (TCR) interacting with BTN2A1 and demonstrate the existence of a second ligand that co-binds to a distinct epitope on Vγ9Vδ2 TCR. Using these data, the authors suggest a model of Vγ9Vδ2 TCR activation in which BTN2A1 and BTN3A1 are tethered to each other at the steady state, and must disengage to allow TCR binding.

    • Thomas S. Fulford
    • Caroline Soliman
    • Adam P. Uldrich
    Research
    Nature Immunology
    Volume: 25, P: 1355-1366