Search

Forecast failure for controversial researcher

Understanding collective behaviour is an important aspect of managing the pandemic response. Here the authors show in a large global study that participants that reported identifying more strongly with their nation reported greater engagement in public health behaviours and support for public health policies in the context of the pandemic.

Human affect is shaped in part by whether desirable states are achieved under personal control. Here, the authors show that control beliefs affect happiness and pride, and how those effects relate to neural responses in the prefrontal cortex and behavioral preferences for exerting control.

Lineages within the Mycobacterium tuberculosis complex display differences in virulence and drug susceptibility patterns. Here, Banaei-Esfahani et al. compare strains from two lineages and show that small genetic variations are associated with lineage-specific differences in gene expression networks, metabolism, and tolerance to bedaquiline.

Cells rely on tightly controlled RNA splicing to ensure proper gene expression. Here, the authors show that CDK11-driven phosphorylation of SF3B1 recruits SNIP1 and the RES complex to activate the spliceosome, uncovering a signaling pathway essential for accurate splicing, cell survival, and disease prevention.

Cytoplasmic dsRNA co-localizes with TDP-43 inclusions in Alzheimer’s disease brain cells, driving neurotoxic interferon signaling. JAK inhibitors and TYK2 blockade rescue this toxicity, identifying TYK2 as a target for TDP-43-linked AD and ALS.

Insulin controls adipocyte metabolism through changes in protein localisation. Here, the authors use cell-wide subcellular proteomics to uncover extensive insulin-regulated protein redistribution and identify C3ORF18 as a regulator of adipocyte insulin sensitivity.

An analysis of the responses of 15 diverse human gut bacteria in more than 100 pairwise co-cultures reveals extensive remodelling of the bacterial proteome and metabolome in response to the presence of other species.

A newly developed algorithm enabled clustering of all 256 million (66 million identified and 190 million unidentified) peptide MS/MS spectra available in the PRIDE Archive database, allowing the detection of millions of consistently unidentified spectra across different data sets, of which roughly 20% could be identified using multiple complementary analysis tools.

Data from cryogenic electron microscopy combined with hydrogen–deuterium exchange mass spectrometry inform a mechanism for cold-evoked activation of the TRPM8 channel, providing a structural and energetic framework to explain cold sensitivity.

Variants in NOS1AP can cause monogenic nephrotic syndrome. Here, the authors show that disrupting the intergenic NOS1AP splice isoform that is more prevalent in podocytes leads to monogenic kidney disease responsive to RAAS inhibition.

Abumanhal-Masarweh et al. profile plasma proteomes of cancer patients during radiotherapy and detect acute changes in inflammatory and immune pathways. Correlating these changes with toxicity data enables identification of a predictive signature for radiation-induced toxicities.

By generating whole genomes of 150 participants representing 12 Khoe-San click-speaking groups, the authors, reveal over 1.3 million unknown DNA variants, distinct San and here described Damara genetic trajectories, while achieving century-long global predominance.

This study reveals that the malaria parasite Plasmodium uses a unique Aurora kinase complex to control cell division. This divergent machinery regulates spindle formation and is essential for parasite transmission.

Nuclear protein homeostasis relies on proteasome import into the nucleus. Here the authors identify how assembled human proteasomes are transported across the nuclear pore complex and reveal a mechanism enabling the large complex to bypass pore size limitations.

Some bacterial species display gliding motility associated with slime secretion through nozzle-like structures at the cell poles. Here, Zuckerman, So & Hoiczyk show that the nozzles are composed of PilQ/GspD proteins usually associated with protein secretion, thus suggesting that secretins may be required for the secretion of non-proteinaceous polymers in these bacteria.

Laboratory automation, machine learning, and metabolic engineering may be combined to quickly and efficiently build productive microbial strains. Here the authors used these techniques in P. putida to boost isoprenol titers 5-fold over six DBTL cycles while sampling a reduced design space.

In mice, DHPS supports the maturation, maintenance and function of tissue-resident macrophages via the polyamine–hypusine axis, with implications for macrophage-targeting therapies.

Polymerization-inducing chimeras are a novel bifunctional modality that uses protein symmetry to sequester targets by forming insoluble supramolecular assemblies. This approach overcomes reliance on accessory proteins and differs functionally from conventional inhibitors.

Variants in the PSMC5 gene impair proteasome function and cellular homeostasis, altering brain development in children. This study reveals underlying molecular mechanisms contributing to this neurodevelopmental phenotype, and suggests therapeutic leads for neurodevelopmental proteasomopathies.

This study detects Chlamydia pneumoniae in human retina and brain, increasing with AD severity. Retinal pathogen load with Aβ₄₂ may predict AD stage. In models, infection drives Aβ deposition and NLRP3 activation, worsening pathology and cognition.

Increasing amount of public omics data are important and valuable resources for the research community. Here, the authors develop a set of metrics to quantify the attention and impact of biomedical datasets and integrate them into the framework of Omics Discovery Index (OmicsDI).

Using the single-cell Deep Visual Proteomics technique, the authors develop a resource providing spatially resolved proteomic analysis of individual cells in human liver tissue.

The IKKα kinase was previously reported to promote metastasis. Here, the authors reveal that loss of IKKα function promotes colorectal cancer liver metastasis by expanding a CDH17⁺/CLDN2⁺ epithelial subpopulation characterized by tight junction stabilization and collective migration.

Soluble epoxide hydrolase, a pro-inflammatory enzyme predominantly expressed in the liver, serves as a key mediator of liver-aorta crosstalk, amplifying systemic inflammation and promoting the development of abdominal aortic aneurysms.

Just et al. develop a highly accurate biological classification method for identifying suicidal ideators by applying machine learning to neural representations of death- and life-related concepts.

GGC repeat expansions causing oculopharyngeal myopathy with or without leukoencephalopathy are located in small open reading frames and translated into polyglycine proteins that form cellular aggregates, driving neuronal and muscle cell dysfunction.

This case report presents a multi-omics case analysis of intravenous phage-antibiotic co-therapy in a patient with cystic fibrosis during an acute-on-chronic pulmonary exacerbation caused by multidrug-resistant Pseudomonas aeruginosa.

By integrating microglial transcriptomics with CSF proteomics, this study reveals protein markers that distinguish early and late Alzheimer’s disease and that have the potential to improve disease tracking and prediction.

Closing a major gap in photosynthetic metabolic modelling, the authors provide over 500 estimates of in vivo enzyme catalytic rate in C. reinhardtii, which considerably improves predictions on how enzyme mass is allocated to different pathways.

Despite high morbidity and mortality, there are currently no approved vaccines for protection against Middle East respiratory syndrome (MERS) coronavirus. Here the authors develop a ferritin nanoparticle-based MERS-CoV vaccine that elicits high levels of neutralizing antibodies in mice, non-human primates, and alpacas and prevents infection in an alpaca challenge model.

NMDARs and MAGUK proteins are capable of forming higher-order protein assemblies, however their organisation in the intact brain is unclear. Here, Frank et al. identify mouse and human supercomplexes and discover their mechanism of assembly using genetic tagging and affinity purification.

Analyses of learning mechanisms, pupillometry, and fMRI data from healthy participants in a cognitive estimation task reveal neural dynamics related to how self-efficacy beliefs are formed, as well as how this process is impacted by emotions.

The gut microbiome is key to health, yet its protein functions remain largely unexplored. Here, the authors present uMetaP, ultra-sensitive metaproteomics workflow that combines the timsTOF Ultra and FDR-validated de novo sequencing, boosting detection 5,000-fold and revealing gut inflammation targets.

Artificial intelligence and machine learning promise to transform cancer therapies by accurately predicting the most appropriate drugs to treat individual patients. Here, the authors present an approach which uses omics data to produce ordered lists of drugs based on their effectiveness in decreasing cancer cell proliferation.

Knaan et al. examine metabolic and behavioral adaptations to a 12-week supervised aerobic exercise program in adults with overweight. Exercise induces energy compensation through reduced resting metabolism, improved movement efficiency, and selective shrinkage of highly metabolic organs, thereby limiting weight loss.

Here, the authors show that myoferlin is a crucial host factor that helps move viral genetic cargo to the cell surface, boosting influenza, RSV and Sendai virus spread, highlighting a common weak spot for future antivirals.

Bond et al. show that inducible PolG mutation in muscle causes mtDNA damage and muscle wasting. This is driven by the integrated stress response (ISR) and reduction in folate intermediates, linking impaired folate metabolism with ISR/disease induction.

Accurate spectral libraries are essential for analyzing data-independent acquisition (DIA) proteomics data. Here, the authors present Carafe, which trains on DIA data to build experiment-specific spectral libraries, boosting peptide detection across diverse datasets.

The number of publicly available proteomics datasets is growing rapidly, but a standardized approach for describing the associated metadata is lacking. Here, the authors propose a format and a software pipeline to present and validate metadata, and integrate them into ProteomeXchange repositories.

Phosphorylation sites are ranked for functional relevance using a comprehensive, high-quality human phosphoproteome.