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Showing 1–50 of 1221 results
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  • β2-adrenergic receptor(β2AR) signalling induces ERK activity at endosomes, but not at the plasma membrane, and this activity is dependent on active, endosome-localized Gαs and requires ligand-stimulated β2AR endocytosis.

    • Yonghoon Kwon
    • Sohum Mehta
    • Jin Zhang
    Research
    Nature
    Volume: 611, P: 173-179
  • DNA damage tolerance is regulated by ubiquitination of PCNA. Here, the authors present kinetic and structural studies showing that USP1/UAF1 prefers trimming K63- and K48-ubiquitin chains down over cleavage of monoubiquitinated PCNA. Mutant analysis suggests evolutionary preservation of this mechanism.

    • Niels Keijzer
    • Jan Sakoltchik
    • Titia K. Sixma
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Synthetic nanocages that can adapt the size and shape of their cavity in response to a given guest have potential applications in various areas, including chemical purification. Now a flexible, pseudo-cubic metal–organic cage has been developed that is able to dynamically expand its cavity from 46% to 154% of its initial volume by flipping its cage faces.

    • Houyang Xu
    • Tanya K. Ronson
    • Jonathan R. Nitschke
    ResearchOpen Access
    Nature Chemistry
    Volume: 17, P: 289-296
  • Cycloaddition reactions are among the most useful reactions in chemical synthesis, but biosynthetic enzymes with 2 + 2 cyclase activity have yet to be observed. Now it is shown that a β-barrel-fold protein catalyses competitive 2 + 2 and 4 + 2 cycloaddition reactions. This protein can be engineered to preferentially produce the exo-2 + 2, exo-4 + 2 or endo-4 + 2 product.

    • Hongbo Wang
    • Yike Zou
    • K. N. Houk
    Research
    Nature Chemistry
    Volume: 15, P: 177-184
  • In this work, authors show how the enterotoxigenic Escherichia coli (ETEC) protease EatA cleaves the human mucus protein MUC2 at a C-terminal site, allowing bacteria to cross the intestinal mucus, reach epithelial cells, and promote infection, as demonstrated using a human MUC2 transgenic mouse model.

    • Sergio Trillo-Muyo
    • Brendan Dolan
    • Sjoerd van der Post
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-12
  • 1,3-Pr2-6-OTs GlcNAlk is a precursor uniquely targeting the essential glycosyltransferase MGAT1 to selectively tag hybrid N-glycan-modified proteins. Some hybrid-glycan tagged proteins move through a route from the Golgi to the nucleus/nucleolus.

    • Mana Mohan Mukherjee
    • Devin Biesbrock
    • John A. Hanover
    Research
    Nature Chemical Biology
    Volume: 21, P: 681-692
  • Cyclohexene isotopologues and stereoisotopomers with varying degrees of deuteration are formed by binding a tungsten complex to benzene, which facilitates the selective incorporation of deuterium into any position on the ring.

    • Jacob A. Smith
    • Katy B. Wilson
    • W. Dean Harman
    Research
    Nature
    Volume: 581, P: 288-293
  • Alkenes are essential functional groups in organic chemistry, featuring well-defined geometries and bond orders of 2. In this study, cubene and 1,7-quadricyclene are calculated to possess unusual hyperpyramidalized geometries and low alkene bond orders near 1.5. Their resultant high reactivities ultimately permit access to intricate scaffolds and new chemical space.

    • Jiaming Ding
    • Sarah A. French
    • Neil K. Garg
    ResearchOpen Access
    Nature Chemistry
    P: 1-10
  • Dysregulation of the kinase Mnb is implicated in autism spectrum disorder and Down’s syndrome. Here the authors demonstrate that Mnb is required for correct synaptic morphology and synaptic vesicle endocytosis, which it achieves via phosphorylation of the synaptic endocytosis protein Synaptojanin.

    • Chun-Kan Chen
    • Catherine Bregere
    • Karen T. Chang
    Research
    Nature Communications
    Volume: 5, P: 1-14
  • Here, Li et al. perform a genome-wide CRISPR screen to identify host dependency factors for influenza A virus infection and show that the host mRNA cap methyltransferase CMTR1 is important for viral cap snatching and that it affects expression of antiviral genes.

    • Bo Li
    • Sara M. Clohisey
    • Nir Hacohen
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-18
  • Rev1 is a specialized translesion synthesis DNA polymerase involved in the bypass DNA damage during DNA replication. Here, the authors determine the structural basis for preferential incorporation of dCTP by Rev1 during bypass of DNA damage.

    • Tyler M. Weaver
    • Timothy H. Click
    • Bret D. Freudenthal
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-12
  • Mobile group II introns function as ribozymes to splice and reinsert themselves into DNA, thereby colonizing new genomic regions. Here the authors use single-molecule FRET and molecular dynamics simulations to reveal a structural link between metal ion induced kinetic heterogeneity and the sugar puckers at the exon-intron binding interface.

    • Fabio D. Steffen
    • Mokrane Khier
    • Roland K. O. Sigel
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-11
  • Stratified medicine promises to tailor treatment for individual patients, however it remains a major challenge to leverage genetic risk data to aid patient stratification. Here the authors introduce an approach to stratify individuals based on the aggregated impact of their genetic risk factor profiles on tissue-specific gene expression levels, and highlight its ability to identify biologically meaningful and clinically actionable patient subgroups, supporting the notion of different patient ‘biotypes’ characterized by partially distinct disease mechanisms.

    • Lucia Trastulla
    • Georgii Dolgalev
    • Michael J. Ziller
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-28
  • Transcription factor osr2 is identified as a specific marker and regulator of mural lymphatic endothelial cell (muLEC) differentiation and maintenance, and muLECs and border-associated macrophages share functional analogies but are not homologous, providing an example of convergent evolution.

    • Andrea U. Gaudi
    • Michelle Meier
    • Benjamin M. Hogan
    ResearchOpen Access
    Nature
    P: 1-9
  • Genomic analyses applied to 14 childhood- and adult-onset psychiatric disorders identifies five underlying genomic factors that explain the majority of the genetic variance of the individual disorders.

    • Andrew D. Grotzinger
    • Josefin Werme
    • Jordan W. Smoller
    ResearchOpen Access
    Nature
    Volume: 649, P: 406-415
  • Achiral sites on a catalyst can result in formation of racemic product, though this can be avoided where the chiral sites lead to enhanced reaction rates. Here, the authors report that for the hydrogenation of methyl pyruvate the chiral modifier enhances the hydrogenation reactivity by favouring the more reactive enol tautomer.

    • Mausumi Mahapatra
    • Luke Burkholder
    • Wilfred T. Tysoe
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-8
  • Engineering polymerases to synthesize alternative genetic polymers remains a challenging problem in synthetic biology. Using DNA shuffling and droplet microfluidics, the current study provides a short evolutionary path from a DNA polymerase to one with robust RNA-synthesizing activity.

    • Esau L. Medina
    • Victoria A. Maola
    • John C. Chaput
    Research
    Nature Chemical Biology
    P: 1-9
  • A de novo designed zinc-binding protein has been converted into a highly active, stereoselective catalyst for a hetero-Diels–Alder reaction. Design and directed evolution were used to effectively harness Lewis acid catalysis and create an enzyme more proficient than other reported Diels–Alderases.

    • Sophie Basler
    • Sabine Studer
    • Donald Hilvert
    Research
    Nature Chemistry
    Volume: 13, P: 231-235
  • Characterization of the polysaccharide utilization loci from two Bacteroides species from the human gut microbiota define biochemical and structural features underlying the catabolism of a hybrid algal polysaccharide found in edible seaweed.

    • Craig S. Robb
    • Joanne K. Hobbs
    • Alisdair B. Boraston
    Research
    Nature Chemical Biology
    Volume: 18, P: 501-510
  • Expanding the biocatalysis toolbox for C–N bond formation is of great value. Now, a biocatalytic amination strategy using a new-to-nature mechanism involving nitrogen-centred radicals has been developed. The transformations are enabled by synergistic photoenzymatic catalysis, providing intra- and intermolecular hydroamination products with high yields and levels of enantioselectivity.

    • Yuxuan Ye
    • Jingzhe Cao
    • Todd K. Hyster
    Research
    Nature Chemistry
    Volume: 15, P: 206-212
  • Using cryo-electron tomography (cryo-ET) and proteomics, this study identifies the tethering of pathological tau filaments within defined brain extracellular vesicles in Alzheimer’s disease, shining light on the link between these vesicles and tau pathology.

    • Stephanie L. Fowler
    • Tiana S. Behr
    • Benjamin Ryskeldi-Falcon
    ResearchOpen Access
    Nature Neuroscience
    Volume: 28, P: 40-48
  • The analysis of site-specific glycosylation of HIV Envelope glycoprotein (Env) is challenging as it contains 25–30 glycosylation sites with multiple glycan forms at each site. Here the authors present a generally applicable mass spectrometry-based method for site-specific analysis of protein glycosylation that they apply to the analysis of the HIV-1 Env.

    • Liwei Cao
    • Jolene K. Diedrich
    • James C. Paulson
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-13
  • The variability in clinical outcomes of SARS-CoV-2 infection is partly due to deficiencies in production or response to type I interferons (IFN). Here, the authors describe a FIP200-dependent lysosomal degradation pathway, independent of canonical autophagy and type I IFN, that restricts SARS-CoV-2 replication, offering insights into critical COVID-19 pneumonia mechanisms.

    • Lili Hu
    • Renee M. van der Sluis
    • Trine H. Mogensen
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-23
  • Meta-analyses of genome-wide association studies for endometriosis identify 49 distinct association signals. Fine-mapping of causal variants explores functional effects across various tissues. Genetic correlations between endometriosis and other pain conditions are also highlighted.

    • Nilufer Rahmioglu
    • Sally Mortlock
    • Krina T. Zondervan
    Research
    Nature Genetics
    Volume: 55, P: 423-436
  • Bone marrow endothelial cells have dual roles in the regulation of haematopoietic stem cell maintenance and in the trafficking of blood cells between the bone marrow and the blood circulatory system; this study shows that these different functions are regulated by distinct types of endothelial blood vessels with different permeability properties, affecting the metabolic state of their neighbouring stem cells.

    • Tomer Itkin
    • Shiri Gur-Cohen
    • Tsvee Lapidot
    Research
    Nature
    Volume: 532, P: 323-328
  • The spatial single-cell multiomic atlas of the first trimester human placenta at molecular resolution provides a blueprint for future studies on early placental development and pregnancy.

    • Johain R. Ounadjela
    • Ke Zhang
    • Jian Shu
    ResearchOpen Access
    Nature Medicine
    Volume: 30, P: 3495-3508
  • Myocardial contractile force and intracardiac hemodynamic shear stress coordinate the initiation of trabeculation in heart development. Here, the authors report that radially aligned myocardial strain activates snai1b+/Notch cardiomyocytes, initiating delamination for trabeculation.

    • Jing Wang
    • Aaron L. Brown
    • Tzung K. Hsiai
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • GBA, a major gene for Parkinson’s disease and dementia with Lewy bodies, is associated with increased risk of developing dementia. Here, we demonstrate that GBA mutations in mice contribute to cognitive deficits through α-synuclein-independent mechanisms that impact synaptic vesicle endocytosis.

    • D. J. Vidyadhara
    • David Bäckström
    • Sreeganga. S. Chandra
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • A proteomics and computational approach was developed to map the proximal proteome of the activated μ-opioid receptor and to extract subcellular location, trafficking and functional partners of G-protein-coupled receptor activity.

    • Benjamin J. Polacco
    • Braden T. Lobingier
    • Ruth Hüttenhain
    Research
    Nature Chemical Biology
    Volume: 20, P: 1133-1143
  • LepI is an S-adenosylmethionine-dependent pericyclase that catalyses the dehydration, hetero-Diels–Alder reaction and retro-Claisen rearrangement reactions that occur in the formation of the 2-pyridone natural product leporin C. Now, the mechanistic details that underpin this range of catalytic reactions have been uncovered from the crystal structures of LepI and LepI in complex with ligands.

    • Yujuan Cai
    • Yang Hai
    • Yi Tang
    Research
    Nature Chemistry
    Volume: 11, P: 812-820
  • In this Review, the authors synthesize current understanding of sperm DNA fragmentation and its effects on mammalian reproduction. Reproductive consequences for fertilization, embryo development, and pregnancy outcomes and strategies aimed at reducing or preventing DNA fragmentation are examined.

    • Mehran Dabiri
    • Dale M. Goss
    • Majid Ebrahimi Warkiani
    Reviews
    Nature Reviews Urology
    P: 1-28
  • Fatty acid desaturation is central to metazoan lipid metabolism. Here, using C. elegans as a model, the authors show that both endogenous and microbiota-dependent small molecule signals converge to promote lipid desaturation via the nuclear receptor NHR-49/PPARα.

    • Bennett W. Fox
    • Maximilian J. Helf
    • Frank C. Schroeder
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Periselective catalytic asymmetric cross-Diels–Alder reactions between two different conjugated dienes remain underdeveloped. Now, the selectivity challenges are overcome in such a reaction of electron-poor 2-pyrones and unactivated conjugated dienes, and an ambimodal transition state is identified.

    • Meng-Meng Xu
    • Limin Yang
    • Quan Cai
    Research
    Nature Catalysis
    Volume: 4, P: 892-900
  • A ‘light switch’ ruthenium complex is known to show enhanced luminescence in the presence of DNA mismatches — emerging targets for cancer diagnostics and therapeutics — but the way it interacts with DNA has remained unclear. Now, metalloinsertion into and metallointercalation at the minor groove of the double helix have been unambiguously observed in a high-resolution crystal structure.

    • Hang Song
    • Jens T. Kaiser
    • Jacqueline K. Barton
    Research
    Nature Chemistry
    Volume: 4, P: 615-620
  • The developing heart integrates several progenitor cell types. Here they show that the pericardium enveloping the heart develops among cells that form the mesothelium around inner organs and body cavities, distinct from the classic heart field.

    • Hannah R. Moran
    • Obed O. Nyarko
    • Christian Mosimann
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-21