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Showing 51–100 of 955 results
Advanced filters: Author: Tan Shi Clear advanced filters
  • The roles of extracellular RNAs present in bacterial biofilms are poorly understood. Here, Mugunthan et al. show that specific mRNAs associate with extracellular DNA in the matrix of bacterial biofilms, facilitating the formation of viscoelastic networks.

    • Sudarsan Mugunthan
    • Lan Li Wong
    • Thomas Seviour
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • T-cell engager (TCE)-based immunotherapy requires further development in solid tumors due to limited T cell penetration, immunosuppressive tumor microenvironment and toxicity. The authors here develop a glypican-3 targeting mRNA TCE (MTS105) which manifests superior T cell activation and tumor regression hepatocellular carcinoma mice model comparing to conventional TCE, and safety with cynomolgus monkey studies.

    • Yan Huang
    • Shaoli Liu
    • Wei Xu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Magnetic kagome metals are an ideal platform for investigating the interplay between spin and charge degrees of freedom. Here, the authors provide evidence of a charge-density wave intrinsically coupled to spin degrees of freedom in GdTi3Bi4, consistent with a spin–intertwined charge density wave.

    • Xianghe Han
    • Hui Chen
    • Hong-Jun Gao
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-9
  • Recently, spontaneous symmetry breaking was reported in 1D and 2D lattices with long-range interactions on analogue quantum simulators. Here, using a digital quantum annealing algorithm, Hu et al. observe this effect in a tree-like superconducting qubit lattice with short-range interactions at zero temperature.

    • Chang-Kang Hu
    • Guixu Xie
    • Dapeng Yu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-10
  • There has been growing interest in studying magnons in the quantum regime, and coherent coupling to other quantum systems has been demonstrated. Here the authors report quantum level magnon squeezing in a millimeter scale yttrium iron garnet sphere, enabled by strong magnon-superconducting qubit coupling.

    • Yuan-Chao Weng
    • Da Xu
    • J. Q. You
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-8
  • Dehydrogenative alkenylation of C-H bonds is an atom-economical approach to prepare more complex olefins. Here, the authors use a combination of decatungstate and a cobaloxime catalyst for the photocatalytic dehydrogenative alkenylation of alkanes and aliphatic aldehydes with aryl alkenes.

    • Hui Cao
    • Yulong Kuang
    • Jie Wu
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-8
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Using spin-entangled baryon–antibaryon pairs, the BESIII Collaboration reports on high-precision measurements of potential charge conjugation and parity (CP)-symmetry-violating effects in hadrons.

    • M. Ablikim
    • M. N. Achasov
    • J. H. Zou
    ResearchOpen Access
    Nature
    Volume: 606, P: 64-69
  • To enable a sensed RNA to activate diverse RNA effectors, the authors engineer a programmable dual-site ribozyme that, upon RNA trigger binding, self-cleaves to release an embedded RNA. It enables trigger-dependent release of diverse ncRNAs and controls CRISPR-Cas9 editing in zebrafish and human cells.

    • Mandy Yu Theng Lim
    • Chermaine Tan
    • Sherry Shiying Aw
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-18
  • Primary small cell carcinoma of the oesophagus has a poor prognosis, and has not been fully characterised molecularly. Here, the authors study the disease using multi-omics technology and find frequent RB1 disruptions and similarities to small cell lung cancer, opening potential therapeutic avenues.

    • Renda Li
    • Zhenlin Yang
    • Jie He
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • The monolayer transition-metal dichalcogenide molybdenum disulphide has recently attracted attention owing to its distinctive electronic properties. Cao and co-workers present numerical evidence suggesting that circularly polarized light can preferentially excite a single valley in the band structure of this system.

    • Ting Cao
    • Gang Wang
    • Ji Feng
    ResearchOpen Access
    Nature Communications
    Volume: 3, P: 1-5
  • Stem cells are highly resistant to viral infection, irrespective of any interferon response. Here the authors discover that VAMP5 as a potent cell-autonomous defense factor protects ESCs from various viruses’ infection, including SARS-CoV-2 by interacting with RNA replication complexes to defend against viral infection.

    • Huijun Dong
    • Zihang Pan
    • Kuanhui Xiang
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • Primary angle-closure glaucoma is a leading cause of blindness. Here, the authors identify rare deleterious variants in UBOX5 as risk factors and implicate BIP ubiquitination as a potential disease mechanism.

    • Zheng Li
    • Wee Ling Chng
    • Chiea Chuen Khor
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • A trans-ancestry meta-analysis of GWAS of glycemic traits in up to 281,416 individuals identifies 99 novel loci, of which one quarter was found due to the multi-ancestry approach, which also improves fine-mapping of credible variant sets.

    • Ji Chen
    • Cassandra N. Spracklen
    • Cornelia van Duijn
    Research
    Nature Genetics
    Volume: 53, P: 840-860
  • The engineering of localized fields is at the base of ultra-compact plasmonic devices. The authors demonstrate that localized plasmon skyrmions provide a unique way to build arbitrarily shaped skyrmionic textures promising high flexibility and robustness for real applications like information processing.

    • Zi-Lan Deng
    • Tan Shi
    • Andrea Alù
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-7
  • Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

    • Moritz Gerstung
    • Clemency Jolly
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 122-128
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

    • Yiqun Zhang
    • Fengju Chen
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Several mRNA-based vaccines for SARS-CoV-2 are in late phase clinical development. Here, the authors show that a single immunization with a mRNA vaccine expressing SARS-CoV-2 spike RBD induces neutralizing antibodies that are maintained for at least 6.5 months and confer protection in a sera transfer study in mice.

    • Qingrui Huang
    • Kai Ji
    • Jinghua Yan
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-10
  • Genetic muscle diseases are difficult to treat due to challenges in delivering gene editors to muscles throughout the body. Here, authors engineer muscle-specific virus-like particles that fuse with skeletal muscle cells to deliver CRISPR tools and restore dystrophin in a DMD model.

    • Shi-Kun Zhou
    • Jing-Tong Luo
    • Jun Wang
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • DNA fork speed is considered as a potential regulator of stem cell fate. Here, the authors explore its role in radial glial cells (RGCs) during brain development and impacts on behaviour. Notably, an increase in fork speed induces RGCs detach from ventricular zone, mimicking outer-RGC like cells.

    • Jianhong Wang
    • Yifan Kong
    • Lei Shi
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • Tergaonkar and colleagues identify a noncanonical interaction between the NF-κB transcription factor family member p52 and the ETS family member ETS1. They find that the p52–ETS1 complex is required for splenic germinal center B cell formation and T cell-dependent antibody responses.

    • Dhakshayini Morgan
    • Biyan Zhang
    • Vinay Tergaonkar
    Research
    Nature Immunology
    Volume: 26, P: 1553-1566
  • Several challenges are involved in direct targeting of mutant p53, while targeting altered fitness of cells with loss of wild type p53 is an alternative approach. Here they identify niclosamide to be selectively toxic to p53 deficient cells through a previously unknown mitochondrial uncoupling mechanism.

    • R. Kumar
    • L. Coronel
    • C. F. Cheok
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-13
  • The selective assembly of μm-to-mm sized components is challenging because of the short-ranged molecular recognition. Here, the authors demonstrate a self-sorting mechanism to automatically identify the surface chemistry via additivity and competence between long-ranged magnetic/capillary forces.

    • Minghui Tan
    • Pan Tian
    • Feng Shi
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-9
  • In this study, Qin et al. present a murine-adapted SARS-CoV-2 strain, MASCp36, as a model for studying the pathogenicity, evolution and adaptation of the virus to human and animal hosts.

    • Shihui Sun
    • Hongjing Gu
    • Cheng-Feng Qin
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-16
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12