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Showing 1–50 of 170 results
Advanced filters: Author: Xinyue Yu Clear advanced filters
  • Van der Waals materials of the MB2T4 family (M = transition metal or rare-earth metal, B = Bi or Sb, T = Te, Se, or S) have attracted interest for their magnetic and topological properties, but their direct synthesis into 2D form remains challenging. Here the authors report a flux-assisted, phase-controlled growth strategy to directly grow six magnetic 2D MB2T4 crystals.

    • Xingguo Wang
    • Shiqi Yang
    • Yongji Gong
    ResearchOpen Access
    Nature Communications
    P: 1-9
  • Shi, Yu et al. examine the associations of abdominal obesity and plasma fatty acids with microvascular diseases risk in the UK Biobank cohort. Authors find that n-3 polyunsaturated fatty acids are associated with a lower risk, whereas saturated- and monounsaturated- fatty acids are associated with an increased risk.

    • Ruidie Shi
    • Lan Yu
    • Xueli Yang
    ResearchOpen Access
    Communications Medicine
    P: 1-9
  • Gao et al. realized a discontinuous orbital angular momentum metasurface holography, which enhances the channel capacity for holographic multiplexing and makes significant strides in high-security optical information encryption.

    • Xinyue Gao
    • Zhipeng Yu
    • Qinghua Song
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-8
  • Currently, there is a lack of clear understanding on how glioma cells exploit neural electrophysiological signaling to drive hyper-invasive behavior. Here, the authors integrate custom microfluidics with machine learning-based signal decoding to uncover a mechanism by which tumors actively reprogram neural firing patterns, synchronizing with their microenvironment to enhance invasiveness.

    • Ting Xu
    • Xinyue Zhang
    • Bingzhe Xu
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-14
  • T cells have been shown to have a function in chronic lung inflammation in COPD. Here the authors characterise the single cell transcriptional profile of T cells after smoke inhalation in mouse models showing changes in TCR repertoire and Il17a expression in γδ T cells, suggesting smoke-associated γδ T cells are involved in COPD inflammation and implicating γδT17 cells as a possible target for early prevention and treatment of COPD.

    • Xinyue Mei
    • Junxiang Wang
    • Pixin Ran
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-13
  • Serotonin (5-HT) and its derivative melatonin are versatile physiological regulators. Here, the authors report that abscisic acid induces 5-HT biosynthesis via the ABI5 transcription factor in rice.

    • Yuanjiang Cui
    • Xinyue Hou
    • Deyong Ren
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • Pancreatic ductal adenocarcinoma (PDAC) is highly lethal, with treatment effectiveness, including immunotherapy, limited by immunosuppressive tumor microenvironment. This study identifies TNK2/ACK1 as a driver of immune evasion in pancreatic cancer via STAT5A-HVEM signaling that disables CD8⁺ T cells while TNK2 inhibition restores antitumor immunity and synergizes with anti-PD-1 and chemotherapy in PDAC models.

    • Chao Wu
    • Weishuai Liu
    • Jihui Hao
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-22
  • Seahorses have a unique sex role reversal with male pregnancy involving the brood pouch, an evolutionarily novel organ. This study uses single-cell genomics and in vivo experiments to reveal the cellular basis and molecular mechanism of pouch development and diversity in seahorses.

    • Yali Liu
    • Han Jiang
    • Qiang Lin
    Research
    Nature Ecology & Evolution
    Volume: 9, P: 2404-2421
  • Song, Liu, and colleagues introduced a Hydrogen-to-Carbon Mole Ratio (HCR) index to measure the cleanness of global fossil fuel transition over nearly four decades, and found that high-income economies use cleaner fossil fuels (with higher HCR) than low-income ones, highlighting global energy inequality.

    • Guobao Song
    • Xinyue Zhao
    • Gang Liu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • In contrast to the classical streaming potential relying on downstream ionic diffusion, an upstream proton diffusion within two-dimensional nanochannels is found to continuously generate electricity, advancing hydrovoltaic technology.

    • Heyi Xia
    • Wanqi Zhou
    • Ling Qiu
    Research
    Nature Nanotechnology
    Volume: 19, P: 1316-1322
  • During electrocatalytic nitrate reduction, cobalt-based catalysts degrade fast due to the combined effect of nitrate oxidation and electric-field reduction. Here, the authors develop a Co6Ni4 heterostructured catalyst to prevent high valence Co accumulation and achieve efficient ammonia synthesis.

    • Xinyue Shi
    • Wei-Hsiang Huang
    • Hongfei Cheng
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • Azetidine is a pharmacophore present in drug-related molecules. Here the authors unveil a two-metalloenzyme cascade leading to the azetidine-containing polyoximic acid, in which PolE functions as an Fe2+/pterin-dependent l-isoleucine desaturase, while PolF is a haem-oxygenase-like diiron oxidase, orchestrating the sequential desaturation and cyclization. These findings expand our knowledge of metalloenzymes.

    • Rong Gong
    • Yao Qu
    • Wenqing Chen
    Research
    Nature Chemistry
    P: 1-10
  • Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

    • Moritz Gerstung
    • Clemency Jolly
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 122-128
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

    • Yiqun Zhang
    • Fengju Chen
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Use of ether-based electrolytes in Na-ion batteries is challenged with oxidation at high voltages. Here, authors report passivation of vulnerable ether solvents, enabling cathode electrolyte interphase enriched with NaF and NaNxOy and elevating the oxidation resistance of the electrolyte to 4.8 V.

    • Xingyu Wang
    • Qi Fan
    • Hui Xia
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

    • Yulia Rubanova
    • Ruian Shi
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Chen et al. present a deep learning-based lead optimization model that combines generative artificial intelligence with structure-based approaches. The method is successfully applied to the design of drug-like molecules targeting the recently identified LTK protein target with high potency and selectivity.

    • Shicheng Chen
    • Odin Zhang
    • Peichen Pan
    Research
    Nature Machine Intelligence
    Volume: 7, P: 448-458
  • Caloric restriction promotes healthy aging, but dietary alternatives are needed. Here, the authors show that a high-fiber diet mimics caloric restriction’s benefits in mice, improving metabolism, cognition, and aging markers without reducing food intake.

    • Fangchao Hu
    • Lu Yu
    • Ziyun Wu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Reducing the size of the nanopesticide delivery system could improve pesticidal efficacy, but achieving unimolecular-sized nanosystems in a water-based process remains challenging. Here, the authors develop a water-based unimolecular platform that enhances cellular uptake, insect-dermis and leaf-cuticle penetration of pesticide, leading to improved field control efficacy against multiple pests.

    • Xingye Li
    • Xinyue Wang
    • Yan Wang
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Some cancer patients first present with metastases where the location of the primary is unidentified; these are difficult to treat. In this study, using machine learning, the authors develop a method to determine the tissue of origin of a cancer based on whole sequencing data.

    • Wei Jiao
    • Gurnit Atwal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Using Kullback–Leibler divergence to analyze distribution deviations in brain morphology between ASDs and TDCs, this study reveals a shift from gray matter overgrowth to delayed maturation, with atypically developing regions constrained by intrinsic functional networks.

    • Yu Feng
    • Weixing Zhao
    • Xujun Duan
    ResearchOpen Access
    Communications Biology
    Volume: 8, P: 1-12
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

    • Marta Paczkowska
    • Jonathan Barenboim
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • 2D Ta-based transition metal dichalcogenides have been predicted to host highly confined plasmons, but their observation has been lacking. Here, the authors report momentum-resolved electron energy loss spectroscopy measurements of 2H-TaS2 monolayers and bilayers, showing plasmon resonances with lateral confinement up to 300 and group velocity down to ~10−4c at large wave vectors.

    • Hue T. B. Do
    • Meng Zhao
    • Michel Bosman
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-10