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Large-scale screening of blinding eye diseases from routine blood tests

Abstract

Blinding eye diseases pose a substantial global health burden, yet current screening strategies are limited by resource demands and poor accessibility, particularly in underserved settings. Leveraging the broad availability of routine blood testing, we developed a scalable and non-invasive machine learning-based multidisease eye screening (MES) framework to identify individuals at higher risk of major blinding eye diseases and prioritize referral for confirmatory ophthalmic evaluation. Using data from 93,839 participants and internally validated in 33,622 individuals, the MES test integrates a binary classifier to detect eye disease and a multiclass classifier to differentiate seven common blinding conditions. Performance was further evaluated in three independent external cohorts (n = 34,087), a prospective hospital-based cohort (n = 43,556) and a large population-based cohort (n = 498,095). Across validation datasets, the MES test achieved high diagnostic performance for detecting any eye disease, with an area under the curve of 0.9264–0.9561, positive predictive values of 0.9127–0.9260 and negative predictive values of 0.8075–0.8917. Subtype-level classification demonstrated a macroaveraged area under the curve of 0.889–0.900. In real-world clinical and community settings, the MES test yielded positive and negative predictive values of 0.959 and 0.960, and 0.931 and 0.991, respectively. Performance remained robust across age and comorbidity subgroups. These results support the potential of the MES framework as a scalable triage aid to identify individuals at higher risk and prioritize confirmatory ophthalmic assessment for major blinding eye diseases.

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Fig. 1: Flowchart of study participant inclusion.
Fig. 2: Model development using all included indicators to distinguish patients with eye diseases from controls.
Fig. 3: Model development and validation after feature reduction using SHAP to distinguish patients with eye disease from controls.
Fig. 4: Model development and validation to distinguish seven types of eye disease.
Fig. 5: Performance of the MES test in the prospective hospital-based validation and community-based cross-sectional cohorts.

Data availability

Access to comprehensive, individual-level clinical data is restricted to protect sensitive human information and to comply with the terms of the informed consent. Requests for access to the de-identified data can be made to the corresponding author by providing a study protocol and ethical approval documentation. Requests for raw data will be reviewed by the corresponding author (S.L.), who will facilitate further communications with the cohort leaders and relevant ancillary study committees as appropriate. The corresponding author typically responds to such requests within 2–3 weeks. A Data Use Agreement will be established between the requesting party and the data holder, specifying that the data may only be used for the prespecified project described in the request and that any resulting paper must reference the data source. Once access has been granted, the data will remain available for 6 months. The data generated in this study are provided in the Supplementary Information and Source Data file. Source data are provided.

Code availability

The analysis code was written in Python (v.3.11) and relies on standard open-source libraries (NumPy, Pandas, scikit-learn), used in compliance with their Massachusetts Institute of Technology and Berkeley Software Distribution licences. All reused components retain their original licence and attribution. The analysis code is available on GitHub (https://github.com/fudanRenjun/EyeGuard7/tree/master) and has been archived with Zenodo at https://doi.org/10.5281/zenodo.18637593 (ref. 64).

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Acknowledgements

This work was supported by the National Key Research and Development Program of China (no. 2024YFC2510805 to X.Z.), the Shanghai Municipal Health Commission (no. 2023ZZ02019 to X.Z.), the National Natural Science Foundation of China (no. 82302582 to S.L., no. 82371091 to M.L., no. 82572671 to S.G.) and Oriental Talent Plan (no. SSF828079 to M.L.). The sponsor or funding organization had no role in the design or conduct of this research.

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Authors

Contributions

W.C., X.Z., M.L. and S.L. conceptualized and designed the study. S.L., Y.L., J.W., S.G., X.W., M.Z., H.H., Y.S. and J.R. performed most of the experiments. W.C., S.G., X.Z. and M.L. performed parts of the experiments. S.L., J.W., Y.S. and J.R. acquired and analysed the data. S.L., J.R., M.L., Y.L. and J.W. prepared the figures and performed the statistical analysis. S.L. wrote the original paper draft. W.C., X.Z., M.L., S.G. and S.L. reviewed and edited the paper. All authors read and approved the final paper.

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Correspondence to Shengjie Li, Shunxiang Gao, Wenjun Cao, Meiyan Li or Xingtao Zhou.

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Nature Health thanks Yoshihiko Usui and the other, anonymous, reviewer(s) for their contribution to the peer review of this work. Primary Handling Editor: Lorenzo Righetto, in collaboration with the Nature Health team.

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Supplementary Figs. 1–9, Tables 1–42 and Methods.

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Supplementary Tables 1–42.

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Li, S., Ren, J., Wu, J. et al. Large-scale screening of blinding eye diseases from routine blood tests. Nat. Health (2026). https://doi.org/10.1038/s44360-026-00101-5

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