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A ROS-chemotactic antioxidative nanoscavenger prevents acute thrombosis by protecting vascular endothelial cells from oxidative stress, while circumventing the bleeding risk associated with current clinical antithrombotic drugs.

Large-effect variants in autism remain elusive. Here, the authors use long-read sequencing to assemble phased genomes for 189 individuals, identifying pathogenic variants in TBL1XR1, MECP2, and SYNGAP1, plus nine candidate structural variants missed by short-read methods.

A new artificial intelligence model, DeepSeek-R1, is introduced, demonstrating that the reasoning abilities of large language models can be incentivized through pure reinforcement learning, removing the need for human-annotated demonstrations.

In this study, Zhu et al. report Nb457, an alpaca-derived nanobody with broad-spectrum anti-HIV1 activity and show that Nb457 induces conformational changes in CD4, blocking viral entry and completely inhibiting HIV-1 in its trimeric form.

The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

Some cancer patients first present with metastases where the location of the primary is unidentified; these are difficult to treat. In this study, using machine learning, the authors develop a method to determine the tissue of origin of a cancer based on whole sequencing data.

International trade links regions of production and consumption. Analyses with a multiregional input–output model based on trade data reveal that much of East Asia’s aerosol radiative forcing is tied to consumption in developed countries.

The histone deacylase SIRT7 regulates gene expression via highly specific activity on chromatin substrates. Moreno-Yruela et al. provide cryo-EM structures and identify the mechanisms of substrate specificity and a unique nucleosome-binding domain.

Global change is driving a global biodiversity crisis. Here, using a global meta-analysis, the authors find no overall change in plant β-diversity, though effects vary by region, ecosystem, global change factor, and biodiversity dimension.

Squeezed states are key resources in quantum technologies, but generating high squeezing usually requires strong nonlinearity. Here, the authors propose and demonstrate a displacement-enhanced squeezing approach that uses weak Kerr nonlinearity and off-resonant driving to generate and amplify squeezing inside a superconducting microwave cavity, reaching 14.6 dB of intracavity squeezing.

Achieving high-performance conjugated polymers with intrinsic flexibility and printable capacity is a great challenge. Here, the authors report asymmetric substituted polymers with strong inter aggregate capillary interaction for deep-blue flexible printed polymer light-emitting diodes.

This work achieves a flexible organic ferroelectric crystal with interesting plasticity by implementing fluorination on anion, making it a competitive candidate for flexible and wearable devices.

A large bulk photovoltaic effect is observed in the type-I Weyl semimetal TaAs, and attributed to the diverging Berry curvature of the Weyl nodes.

In this study, the authors present an fMRI‑based signature of corticospinal connections, which predicts individual pain sensitivity, generalizes to patient cohorts, and tracks changes after brain stimulation, suggesting a biomarker to guide personalized pain care.

Water in the mantle transition zone beneath Northeast Asia is sourced from the Earth’s surface and introduced by the subducted Pacific slab, according to a study of potassium isotopes from Cenozoic volcanics.

With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

Leukemic stem cells (LSCs) drive relapse and therapy resistance in acute myeloid leukemia (AML). Here, the authors show that increasing the stiffness of LSCs reduces their stemness and enhances their susceptibility to natural killer cell-mediated immunotherapy in AML.

Cost-effective carbon is inherently selective for O₂-to-H₂O₂ conversion, yet challenged by insufficient activity and unclear active site identification. Here, the authors report surface-engineered carbon quantum dots that elucidate the active motifs and achieve high-rate H₂O₂ electrosynthesis.

Bacterial N⁶-methyladenine (6mA) is an intrinsic epigenetic marker. Here, the authors evaluate and compare eight third-generation sequencing tools for 6mA identification, assessing performance in terms of motif discovery, site-level accuracy, single-molecule accuracy, and outlier detection.

Sulfonyl fluorides have potential application in chemical biology, materials science, and drug discovery, but their preparation remains challenging. Here, the authors report an air-stable fluorosulfonylating reagent that enables the radical fluorosulfonylation, hydrofluorosulfonylation and migratory SO₂F-difunctionalization of unsaturated hydrocarbons to construct a variety of sulfonyl fluoride compounds.

The authors demonstrate an efficient way to generate high-purity vortex beams by applying optical neural networks to cascaded phase-only metasurfaces. Specifically, they present record-high-quality Laguerre-Gaussian (LG_p,l) optical modes with polynomial orders p = 10 and l = 200 with purity in p, l and relative conversion efficiency of 96%, 85%, and 70%, respectively.

Currently, there is limited understanding of the molecular subtypes of fumarate hydratase (FH)-deficient renal cell carcinoma (RCC). Here, the authors employ integrated genomics and transcriptomics to develop a CpG site-specific methylation signature for the identification of FH-deficient RCC, and to identify three distinct molecular subtypes for this rare but highly lethal kidney cancer.

Accurate tree cover mapping is vital for fighting climate change and land degradation. This high-resolution study reveals that 17% of pan-tropical tree cover was previously undetected, with over half of recent losses linked to human activities.

The work presents a reprogrammable metasurface, constructed from a matrix of filamentary metal traces, that can precisely and rapidly morph into a wide range of target shapes and dynamic shape processes.

TFE3-translocation renal cell carcinoma (TFE3-tRCC) is a rare subtype of kidney cancer with no standard treatment options for the advanced disease. Here, the authors perform genomic and transcriptomic profiling of 63 untreated primary TFE3-tRCC tumours and reveal potential therapeutic targets.

Single-atom catalysts enhance wastewater ozonation but face limitations from symmetrical coordination. Here, asymmetrical Fe-N₃P₁ sites significantly boost catalytic ozonation by modulating electronic structures, enabling efficient pollutant removal.

Two genetically linked TdNLR genes from wild emmer wheat are both required for YrTD121-mediated stripe rust resistance. The TdNLR1 and TdNLR2 pair lacks an integrated domain, representing an uncommon architecture for paired NLRs in plants.

Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

A pan-cancer genomic analysis reports the effects of structural variations on chromatin domains (TADs). Most TAD disruptions do not result in appreciable changes in expression of nearby genes.

An analysis of 2,954 genomes from 38 cancer subtypes identified 19,166 retrotransposition events in 35% of samples. Aberrant LINE-1 retrotranspositions can lead to the deletion of tumor-suppressor genes as well as the amplification of oncogenes.

Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

The authors realize a two-dimensional hybrid perovskite with robust multiaxial ferroelectricity and nonlinear optical response via molecular fluorination and lone pair expression of Ge²⁺, enabling prominent piezoelectric sensing in composite device

In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

The understanding of the reemergence of pressure induced superconductivity in alkali-metal intercalated FeSe is hampered by sample complexities. Here, Sun et al. report the electronic properties of (Li_1–xFe _x )OHFe_1–ySe single crystal not only in the reemerged superconducting state but also in the normal state.

Solution-processed small-molecule solar cells with almost 100% internal quantum efficiency and a power conversion efficiency of 9% are reported. The cells make use of a donor molecule called DRCN7T and use PC71BM as an acceptor.

C4 photosynthesis serves as a prominent example of convergent evolution in complex traits. Here, the authors construct chromosome-scale genome assemblies for five Flaveria species and investigate the genomic evolution of C4 photosynthesis. Their findings emphasize the roles of retrotransposition and transcriptional regulation in shaping C4 traits.