Abstract
The nuclear envelope (NE) is essential for cellular homeostasis, yet its integrity declines with age, accelerating functional deterioration. Here we report a mitochondria-to-NE signalling pathway that safeguards NE integrity through redox-dependent lipid metabolism. In Caenorhabditis elegans, reducing mitochondrial ETC activity preserves NE morphology during ageing. This effect requires developmental mitochondrial superoxide, which downregulates SBP-1 (SREBP orthologue) and suppresses unsaturated fatty acid biosynthesis. The resulting reduction in unsaturated fatty acid levels limits lipid peroxidation, thereby preserving NE structure. Interventions targeting lipid peroxidation preserve NE integrity, extend lifespan in worms and ameliorate senescence-associated phenotypes in human fibroblasts and monkey cells mimicking Hutchinson–Gilford progeria syndrome disease. Our findings reveal a previously unrecognized role for mitochondrial superoxide as a protective developmental signal that programs long-term NE integrity. This work establishes lipid peroxidation control as a conserved strategy to delay nuclear ageing and highlights redox–lipid cross-talk as a therapeutic axis for healthy ageing.
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Data availability
The details of the chemical reagents, kits and software are provided in Supplementary Tables 5. All relevant data are available. The raw sequencing data for RNA-seq generated in this study have been deposited in the Genome Sequence Archive in the National Genomics Data Center under accession number CRA009340. Further information and requests for resources and reagents should be directed to and will be fulfilled by corresponding author. Source data are provided with this paper.
Code availability
Code is available on GitHub (https://github.com/hirscheylab/ddh/) for a package we generated that includes detailed documentation, which explains the model’s architecture, data preprocessing steps and how to run the code.
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Acknowledgements
We thank the laboratory members of Y.T. for insightful discussions and Y. Liu for help in strain maintenance. We are grateful to D. C. Xu from the Shanghai Institute of Organic Chemistry and Y. Y. Niu from Kunming University of Science and Technology for sharing monkey HGPS (p.Cys1824Thr LMNA) fibroblast cells; and to T. Li and L. K. Wang from the Institute of Biophysics for sharing human BJ fibroblast cells and the assistance with cell culture. We thank the Center for Biological Imaging (CBI), Institute of Biophysics, Chinese Academy of Science for our electron microscopy, and we are grateful to L. Wang and C. Peng for their help in making EM samples. Y.T. is supported by the National Key R&D Program of China (2022YFA1303000), the National Natural Science Foundation of China (32225025, 32321004, 92254305), the CAS Project for Young Scientists in Basic Research (YSBR-076) and the New Cornerstone Science Foundation through the XPLORER PRIZE. X.W. is supported by the National Natural Science Foundation of China (32371214). Q.Z. is supported by the National Natural Science Foundation of China (32471212). C.Z. is supported by the CAS project (CAS-WX2022GC-0104). We acknowledge the Japanese National BioResource Project and the Caenorhabditis Genetics Center, funded by the National Institutes of Health-Officer of Research Infrastructure Programs (P40 OD010440) for providing the C. elegans strains used in this work.
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Contributions
Y.T., P.C. and L.Z. conceived the study and designed the experiments. P.C., L.Z., J.Z. and X.H. performed the genetic crosses, RNAi experiments and lifespan analysis, as well as imaging and data analysis. P.C., L.Z., X.W. and Q.Z. performed the RNA-seq experiment analysis. P.C., L.Z., Y.L., Q.Z. and F.Z. performed lipidomic data analysis. C.Z, Z.L. and Q.Y. assisted with the AI-based imaging quantification platform. Y.T., P.C. and L.Z. wrote the manuscript.
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Y.T., P.C., L.Z. and X.W. have applied a patent (202511963787.6 China) for the use of lipid peroxidation inhibitors in the treatment of premature ageing syndrome and delay ageing. Z.L., Q.Y., C.Z., Y.T. and P.C. have applied a patent (202310952096.0, China) for a cellular senescence state prediction method based on nuclear membrane morphology. The other authors declare no competing interests.
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Extended data
Extended Data Fig. 1 Developmental inhibition of cco-1 RNAi is crucial for NE protection during aging.
a, Quantification of the intestinal nuclei area in NPP-1::GFP animals grown on EV or cco-1 RNAi bacteria during aging. b, Relative fold changes of cco-1 expression were quantified by qPCR to assess RNAi knockdown efficiency. c, Oxygen consumption rate (OCR) was measured in N2 animals grown on EV or cco-1 RNAi bacteria at the L4 stage. d, Representative images of hypodermal NE morphology in EMR-1::mCherry animals grown on EV or cco-1 RNAi bacteria during aging. e, Quantification of the nuclei based is on their morphology, as depicted in (d). f, Quantification of the nuclei is based on their circularity ratio, as depicted in (d). g, Representative images of intestinal NE morphology in NPP-1::GFP animals grown on cco-1 RNAi bacteria during development or during post-development (start from late L4 or young adult stage) with age. h, Quantification of the nuclei is based on their morphology, as depicted in (g). i, Quantification of the nuclei is based on their circularity ratio, as depicted in (g). 100 nuclei from more than 20 animals were examined for each group (e,h); the exact number of NE in each class was provided as source data; 3 independent experiments were analyzed in each condition (b,e,h). 5 independent experiments were analyzed in each condition (c). n = 50 nuclei were analyzed in each condition (a), n = 20 nuclei were analyzed in each condition (f,i). Scale bars, 10 μm (d,g). Data are mean ± s.e.m. P values were calculated using two-sided unpaired t-test (b,c), Chi-square test (e,h), One-way ANOVA (a,f,i). Source numerical data are available in the source data.
Extended Data Fig. 2 Changes in NE morphology across different ETC perturbations and long-lived mutants.
a, Representative images of intestinal NE morphology in wild-type or mev-1(kn1) animals grown on OP50 bacteria. b, Quantification of the intestinal nuclei is based on their morphology, as depicted in (a). c, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (a). d, Representative images of intestinal NE morphology in isp-1 RNAi, isp-1(qm150), nuo-6 RNAi, or nuo-6(qm200) animals with age. e, Quantification of the intestinal nuclei is based on their morphology, as depicted in (d). f, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (d). g, Representative images of intestinal NE morphology in NPP-1::GFP animals grown on EV, tomm-22, cts-1, or spg-7 RNAi bacteria. h, Quantification of the intestinal nuclei is based on their morphology, as depicted in (g). i, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (g). j, Representative images of intestinal NE morphology in NPP-1::GFP animals grown on EV or mrps-5 RNAi bacteria. k, Quantification of the intestinal nuclei is based on their morphology, as depicted in (j). l, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (j). m, Representative images of intestinal NE morphology in wild-type, daf-2(e1370), glp-1(e2141), eat-2(ad1116) animals with age. n, Quantification of the intestinal nuclei is based on their morphology, as depicted in (m). o, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (m). 100 nuclei from more than 20 animals were examined for each group (b,e,h,k,n); the exact number of NE in each class was provided as source data; 3 independent experiments were analyzed in each condition (b,e,h,k,n). n = 20 nuclei were analyzed in each condition (c,f,i,l,o). Scale bars, 10 μm (a,d,g,j,m). Data are mean ± s.e.m. P values were derived from two-sided Pearson’s chi-square tests (b,e,h,k,n), One-way ANOVA (c,f,i,l,o). Source numerical data are available in the source data.
Extended Data Fig. 3 Mitochondrial ROS induction underlies NE protection.
a, Representative images of intestinal NE morphology in wild-type, daf-16(mu86), hif-1(ok2564) or skn-1(zu169) animals grown on cco-1 RNAi bacteria. b, Quantification of the intestinal nuclei is based on their morphology, as depicted in (a). c, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (a). d, Representative images of intestinal NE morphology in wild-type, lgg-1(bp500), or atg-3(bp412) animals grown on EV or cco-1 RNAi bacteria. e, Quantification of the nuclei is based on their morphology, as depicted in (d). f, Quantification of the nuclei is based on their circularity ratio, as depicted in (d). g, Representative images of intestinal NE morphology in NPP-1::GFP animals grown on EV bacteria with 0/0.1/0.2 mM paraquat (PQ) supplementation. h, Quantification of the nuclei is based on their morphology, as depicted in (g). i, Quantification of the nuclei is based on their circularity ratio, as depicted in (g). j, Representative images of the subcellular location of SOD-2 or SOD-3. TOMM-20 is a mitochondrial outer membrane protein. 100 nuclei from more than 20 animals were examined for each group (b,e,h); the exact number of NE in each class was provided as source data; 3 independent experiments were analyzed in each condition (b,e,h). n = 20 nuclei were analyzed in each condition (c,f,i). Scale bars, 10 μm (a,d,g,j). Data are mean ± s.e.m. P values were derived from two-sided Pearson’s chi-square tests (b,e,h), One-way ANOVA (c,f,i). Source numerical data are available in the source data.
Extended Data Fig. 4 Developmental mitochondrial superoxide accumulation correlates with NE protection across genetic backgrounds.
a, Representative images of intestine stained with MitoSOX Red dye in N2 animals grown on EV, nuo-2, mev-1, cyc-1, cco-2, or atp-4 RNAi bacteria at L4 stage. b, Quantification of MitoSOX red fluorescence in animals as depicted in (a). c, Representative images of intestine stained with MitoSOX Red dye in N2, isp-1(qm150) or nuo-6(qm200) animals grown on OP50 at early or late L4 stage. d, Quantification of MitoSOX red fluorescence in animals as depicted in (c). e, Lifespan analysis of N2, isp-1(qm150), or nuo-6(qm200) animals grown on EV bacteria. f, Lifespan analysis of N2 animals grown on EV, isp-1 RNAi, or nuo-6 RNAi bacteria. g, Representative images of intestine stained with MitoSOX Red dye in N2 animals grown on EV or mev-1 RNAi, N2 or mev-1(kn1) animals grown on OP50 at L4 stage. h, Quantification of MitoSOX red fluorescence in animals as depicted in (g). i, Representative images of intestine stained with MitoSOX Red dye in N2, daf-2(e1370), glp-1(e2141), eat-2 (ad1116), isp-1 RNAi, or isp-1(qm150) animals at L4 stage. j, Quantification of MitoSOX red fluorescence in animals as depicted in (i). At least 20 animals were quantified in each condition (b,d,h,j). Scale bars, 20 μm (a,c,g,i). Data are mean ± s.e.m. P values were calculated using One-way ANOVA (b,d,h,j). Lifespan data were analyzed with Kaplan Meier (e,f). Source numerical data are available in the source data.
Extended Data Fig. 5 Glutathione (GSH) mediates the disruptive effect of NAC on NE protection during decreased ETC activity.
a, Representative images of intestinal NE morphology in NPP-1::GFP animals grown on EV or cco-1 RNAi bacteria with or without NAC (8 mM), DEM (0.5 mM) or NAC + DEM supplementation. b, Quantification of the intestinal nuclei is based on their morphology, as depicted in (a). c, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (a). d, Relative GSH level of L4 animals grown on EV or cco-1 RNAi bacteria with or without NAC (8 mM). e, Representative images of intestinal NE morphology in NPP-1::GFP animals grown on EV or cco-1 RNAi bacteria with or without GSH (10 mM) supplementation. GSH supplementation from L1 to L4. f, Quantification of the intestinal nuclei is based on their morphology, as depicted in (e). g, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (e). 100 nuclei from more than 20 animals were examined for each group (b,f); the exact number of NE in each class was provided as source data; 3 independent experiments were analyzed in each condition (b,d,f). n = 20 nuclei were analyzed in each condition (c,g). Scale bars, 10 μm (a,e). Data are mean ± s.e.m. P values were derived from two-sided Pearson’s chi-square tests (b,f), One-way ANOVA (c,d,g). Source numerical data are available in the source data.
Extended Data Fig. 6 Canonical oxidative stress pathways are dispensable for NE protection when ETC activity decreases.
a, Representative images of intestinal NE morphology in wild-type, daf-16(mu86), hif-1(ok2564) or skn-1(zu169) animals grown on cco-1 RNAi bacteria. b, Quantification of the intestinal nuclei based on their morphology as depicted in (a). c, Quantification of the intestinal nuclei based on their circularity ratio as depicted in (a). d, Venn diagram of differentially expressed genes (DEGs) in N2 animals grown on EV or cco-1 RNAi bacteria with or without NAC (8 mM). Genes with (|log2FoldChange| ≥ 0.5, adjusted P ≤ 0.05) were selected as DEGs. e, Venn diagram of differentially abundant fatty acids in N2 animals grown on EV or cco-1 RNAi bacteria with or without NAC (8 mM). Fatty acids with the value of variable importance in the projection (VIP) > 0.5, P ≤ 0.05 (Student’s t test) were selected. f, RT-qPCR analyses of sbp-1 in N2 animals grown on EV, cco-1, isp-1,or nuo-6 RNAi bacteria, or in N2, isp-1(qm150), or nuo-6(qm200) mutants grown on OP50 bacteria. g, RT-qPCR analyses of sbp-1 in N2 animals grown on EV, mev-1 RNAi bacteria. h, RT-qPCR analyses of sbp-1 in N2, daf2-(e1370), eat-2(ad1116), or glp-1(e2141) mutants grown on OP50 bacteria. 100 nuclei from more than 20 animals were examined for each group (b); the exact number of NE in each class was provided as source data; 3 independent experiments were analyzed in each condition (b,f,g,h). n = 20 nuclei were analyzed in each condition (c). Scale bars, 10 μm (a). Data are mean ± s.e.m. P values were derived from two-sided Pearson’s chi-square tests (b), One-way ANOVA (c,f,h), two-sided unpaired t-test (g). Source numerical data are available in the source data.
Extended Data Fig. 7 Genetic and dietary reduction of UFAs preserves NE morphology.
a, Representative images of intestinal NE morphology in NPP-1::GFP animals grown on EV, let-767, elo-1, or elo-2 RNAi bacteria. b, Quantification of the intestinal nuclei is based on their morphology, as depicted in (a). c, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (a). d, Representative images of intestinal NE morphology in NPP-1::GFP animals grown on EV, cco-1 RNAi, or sod-2(gk257);sod-3(tm760) animals with or without AA (C20:4, 2 mM) supplementation. e, Quantification of the intestinal nuclei is based on their morphology, as depicted in (d). f, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (d). g, Representative images of intestinal NE morphology in NPP-1::GFP animals grown on EV or cco-1 RNAi bacteria with or without oleic acid (OA, C18:1, 5 mM) supplementation. h, Quantification of the intestinal nuclei is based on their morphology, as depicted in (g). i, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (g). j, Representative images of intestinal NE morphology in NPP-1::GFP animals grown on EV or cco-1 RNAi bacteria with or without stearic acid (SA, C18:0, 5 mM) supplementation. k, Quantification of the intestinal nuclei is based on their morphology, as depicted in (j). l, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (j). 100 nuclei from more than 20 animals were examined for each group (b,e,h,k); the exact number of NE in each class was provided as source data; 3 independent experiments were analyzed in each condition (b,e,h,k). n = 20 nuclei were analyzed in each condition (c,f,i,l). Scale bars, 10 μm (a,d,g,j). Data are mean ± s.e.m. P values were derived from two-sided Pearson’s chi-square tests (b,e,h,k), One-way ANOVA (c,f,i,l). Source numerical data are available in the source data.
Extended Data Fig. 8 Inhibition of lipid peroxidation protects NE morphology and function with age.
a, Representative images of animals stained with lipid peroxidation probe BODIPYTM 581/591 C11 grown on EV or cco-1 RNAi bacteria at Day1 stage. b, Quantification of oxidized lipid ratio based on the fluorescence of BODIPYTM 581/591 C11 staining as depicted in (a). c, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (Fig. 5c). d, Quantification of the nuclei is based on their circularity ratio, as depicted in (Fig. 5e). e, Representative images of intestinal NE morphology in NPP-1::GFP animals in DMSO or FINO2 (2 mM). f, Quantification of the intestinal nuclei is based on their morphology, as depicted in (e). g, Quantification of the intestinal nuclei is based on their circularity ratio, as depicted in (e). h, Quantification of the nuclei is based on their circularity ratio, as depicted in (Fig. 5h). i, Representative fluorescent micrographs of intestinal nuclear permeability in wild-type, cco-1 RNAi, or fer-2 (5 mM) supplementation animals injected with 70 kD dextran in the cytosol and corresponding fluorescence intensity distribution curve. j, Quantification of the ratio of leaky nuclei as depicted in (i). k, Representative fluorescent micrographs of intestinal nuclear permeability in wild-type, cco-1 RNAi, or fer-2 (5 mM) supplementation animals injected with 500 kD dextran in the cytosol with age and corresponding fluorescence intensity distribution curve. l, Quantification of the ratio of leaky nuclei as depicted in (k). n = 21 animals were analyzed in each condition(b). 100 nuclei from more than 20 animals were examined for each group (f), the exact number of NE in each class was provided as source data; n = 20 nuclei were analyzed in each condition (c,d,g,h). n = 3 independent biological repeats (f,j,l). Scale bars, 10 μm (e,i,k). 20 μm (a). Data are mean ± s.e.m. P values were derived from two-sided unpaired t-test (b), two-sided Pearson’s chi-square tests (f), One-way ANOVA (c,d,g,h,j,i). Source numerical data are available in the source data.
Extended Data Fig. 9 Iron chelation and anti-lipid peroxidation interventions preserve NE integrity and extend lifespan.
a, Representative images of intestinal NE morphology in lmn-1 RNAi animals grown on OP50 bacteria with or without VE (5 mM) or fer-2 (2 mM) supplementation. b, Quantification of the intestinal nuclei is based on their morphology, as depicted in (a). c, Lifespan analysis of N2 animals grown on EV or cco-1 RNAi bacteria with or without NAC (8 mM) supplementation. d, Lifespan analysis of N2 animals grown on OP50 E.coli bacteria with or without fer-2 (2 mM or 5 mM) supplementation. e, Lifespan analysis of N2 animals grown with or without FINO2 (2 mM) supplementation. f, Lifespan analysis of N2 animals grown on EV bacteria with or without EPA (C22:5, 2 or 5 mM) supplementation. g, Lifespan analysis of N2 animals grown on EV or cco-1 RNAi bacteria with or without Fer-2 or FINO2 (Fer-2 5 mM, FINO2 2 mM) supplementation. h, Lifespan analysis of N2 animals grown on EV or cco-1 RNAi bacteria with or without 2,2’-bipyridyl (bpy, 10 μM) supplementation. i, Lifespan analysis of N2 animals grown on EV or cco-1 RNAi bacteria with or without 2 2’-bipyridyl (bpy, 50 μM) supplementation. 100 nuclei from more than 20 animals were examined for each group (a); the exact number of NE in each class was provided as source data. 3 independent experiments were analyzed in each condition (b). Scale bars, 10 μm (a). Data are mean ± s.e.m. P values were derived from two-sided Pearson’s chi-square tests (b); lifespan data were analyzed with Kaplan-Meier (c,d,e,f,g,h,i). Source numerical data are available in the source data.
Extended Data Fig. 10 Anti-lipid peroxidation interventions preserve NE morphology and delay cell senescence in normal and HGPS cells.
a-c, Analysis workflow of the roundness (a), smoothness (b), and invagination of nuclear envelope (c) of the nuclei in BJ fibroblasts. d-f, Quantification of the roundness (d), smoothness (e), and invagination (f) of the nuclei in BJ fibroblasts. 20 nuclei were analyzed in (b). 50 nuclei were examined for each group (d); Scale bars, 10 μm (a,b,c). Data are mean ± s.e.m. P values were calculated using One-way ANOVA (d,e,f). Source numerical data are available in the source data.
Supplementary information
Supplementary Information
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Chen, P.X., Zhang, L., Wu, X. et al. Mitochondrial superoxide regulates nuclear envelope integrity and ageing via redox-mediated lipid metabolism. Nat Metab (2026). https://doi.org/10.1038/s42255-026-01452-9
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DOI: https://doi.org/10.1038/s42255-026-01452-9