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Showing 1–50 of 635 results
Advanced filters: Author: A. R. B. M. Fonseca Clear advanced filters
  • Understanding collective behaviour is an important aspect of managing the pandemic response. Here the authors show in a large global study that participants that reported identifying more strongly with their nation reported greater engagement in public health behaviours and support for public health policies in the context of the pandemic.

    • Jay J. Van Bavel
    • Aleksandra Cichocka
    • Paulo S. Boggio
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-14
  • The relative contribution of lipid catabolism on fasting-induced longevity was unknown. Authors showed lifespan extension from fasting depend on silencing lipid catabolism upon nutrient replenishment through phosphorylation of NHR-49 by KIN-19.

    • Lexus Tatge
    • Juhee Kim
    • Peter M. Douglas
    ResearchOpen Access
    Nature Communications
    P: 1-22
  • Identifying jets originating from heavy quarks plays a fundamental role in hadronic collider experiments. In this work, the ATLAS Collaboration describes and tests a transformer-based neural network architecture for jet flavour tagging based on low-level input and physics-inspired constraints.

    • G. Aad
    • E. Aakvaag
    • L. Zwalinski
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-22
  • Cosgun et al. show that, in B cell leukemia, β-catenin expression is maintained at low levels through glycogen synthase kinase 3B (GSK3β)-mediated phosphorylation. Inhibition of GSK3β results in β-catenin–Ikaros–NuRD complex formation, leading to B-ALL cell death through MYC repression.

    • Kadriye Nehir Cosgun
    • Huda Jumaa
    • Markus Müschen
    ResearchOpen Access
    Nature Cancer
    Volume: 7, P: 150-168
  • The CMS Collaboration reports the measurement of the spin, parity, and charge conjugation properties of all-charm tetraquarks, exotic fleeting particles formed in proton–proton collisions at the Large Hadron Collider.

    • A. Hayrapetyan
    • V. Makarenko
    • A. Snigirev
    ResearchOpen Access
    Nature
    Volume: 648, P: 58-63
  • Analysis of the species richness and functional diversity among species across 72 lakes finds that both variables are positively associated with ecosystem multifunctionality, but that—for smaller organisms only—these positive relationships break down with increasing human pressure.

    • Dieison A. Moi
    • Fernando M. Lansac-Tôha
    • Roger P. Mormul
    Research
    Nature Ecology & Evolution
    Volume: 6, P: 1279-1289
  • Ovarian endometriomas, with distinct microenvironment and heightened hormonal sensitivity, are recognized as precursors of ovarian carcinomas. This study decodes ovarian endometriomas by integrating single-cell and spatial transcriptomics with spatial metabolomics to reveal key markers and altered pathways, offering new avenues for diagnosis and therapy.

    • Yujuan Qi
    • Xia Chen
    • Jun Yu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • Using a new analytical method for tracking gamma band events in mouse visual cortex, flexible encoding of visual information according to behavioural context is shown.

    • Quentin Perrenoud
    • Antonio H. de O. Fonseca
    • Jessica A. Cardin
    ResearchOpen Access
    Nature
    Volume: 647, P: 962-969
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • Andrade, Adelino, Fonseca et al. used phylogenetic, phylogeographic, and temporal approaches to track yellow fever viral transmission across forestry, rural, and urban areas of Brazil. All genomes belong to the South American lineage, with one Amazon cluster showing hidden persistence and another in the southeast indicating reintroduction and sustained transmission.

    • Valnete das Graças Dantas Andrade
    • Talita Émile Ribeiro Adelino
    • Luiz Carlos Junior Alcantara
    ResearchOpen Access
    Communications Medicine
    Volume: 6, P: 1-6
  • The quark structure of the f0(980) hadron is still unknown after 50 years of its discovery. Here, the CMS Collaboration reports a measurement of the elliptic flow of the f0(980) state in proton-lead collisions at a nucleon-nucleon centre-of-mass energy of 8.16 TeV, providing strong evidence that the state is an ordinary meson.

    • A. Hayrapetyan
    • A. Tumasyan
    • A. Zhokin
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

    • Yiqun Zhang
    • Fengju Chen
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Capsule-specific human monoclonal antibodies are protective against bloodstream infection by Klebsiella pneumoniae sequence type 147 in a mouse model of septicaemia, and could provide a useful strategy against pathogens with antimicrobial resistance.

    • Emanuele Roscioli
    • Vittoria Zucconi Galli Fonseca
    • Rino Rappuoli
    Research
    Nature
    Volume: 646, P: 1204-1213
  • This study investigates the developmental transcriptional regulation of mitochondrial quality control. Authors identify the Drosophila factor Mirana, homologous to mammalian TZAP, as a key temporal regulator of mitochondrial morphology and function, critical for activity-dependent synaptic connectivity.

    • Iryna Mohylyak
    • Maheva Andriatsilavo
    • Bassem A. Hassan
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • The Human Endometrial Cell Atlas integrates single-cell transcriptomic datasets from women with and without endometriosis. Novel and known cell types are registered using spatial transcriptomics to provide a comprehensive map of the human endometrium in controls and endometriosis cases.

    • Magda Marečková
    • Luz Garcia-Alonso
    • Roser Vento-Tormo
    ResearchOpen Access
    Nature Genetics
    Volume: 56, P: 1925-1937
  • The proteasome is a highly regulated complex fundamental for cell homeostasis and a target for cancer therapy. Here the authors use cryo-EM and single-particle analysis to obtain a detailed map of the interactions between each active sites of the core 20S proteasome and the irreversible inhibitor AdaAhx3L3VS.

    • Paula C.A. da Fonseca
    • Edward P. Morris
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-6
  • The Arctic Mid-Ocean Ridge spreads extremely slowly and hydrothermal vent fields have not been reported in its vicinity. Pedersenet al. describe a black smoker vent field with large hydrothermal deposits and novel fauna distinct from those found in similar environments in the Atlantic.

    • Rolf B. Pedersen
    • Hans Tore Rapp
    • Steffen L. Jorgensen
    ResearchOpen Access
    Nature Communications
    Volume: 1, P: 1-6
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Analysis of soundscape data from 139 globally distributed sites reveals that sounds of biological origin exhibit predictable rhythms depending on location and season, whereas sounds of anthropogenic origin are less predictable. Comparisons between paired urban–rural sites show that urban green spaces are noisier and dominated by sounds of technological origin.

    • Panu Somervuo
    • Tomas Roslin
    • Otso Ovaskainen
    ResearchOpen Access
    Nature Ecology & Evolution
    Volume: 9, P: 1585-1598
  • Here, the authors present results of the ZiBRA-2 project (https://www.zibra2project.org) which is an arbovirus surveillance project, across the Midwest of Brazil using a mobile genomics laboratory, combined with a genomic surveillance training program that targeted post-graduate students, laboratory technicians, and health practitioners in universities and laboratories.

    • Talita Émile Ribeiro Adelino
    • Marta Giovanetti
    • Luiz Carlos Junior Alcantara
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-12
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • How TNF regulates NK cell function and homeostasis is not fully understood. Here the authors investigate conditional knock out mice with TNFR1 and/or TNFR2 deficiency in NK cells upon bacterial infection, and identify that TNFR1 promotes cell death and impairs immunity while TNFR2 increases NK accumulation and enhances immunity.

    • Timothy R. McCulloch
    • Gustavo R. Rossi
    • Fernando Souza-Fonseca-Guimaraes
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-16
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • HARE5, a human accelerated region enhancer, modulates cortical development by influencing neural progenitor cell behaviour, leading to an enlarged neocortex with increased functional independence between cortical regions through amplified WNT signalling.

    • Jing Liu
    • Federica Mosti
    • Debra L. Silver
    Research
    Nature
    Volume: 643, P: 1321-1332
  • Drug resistance remains a major challenge in cancer treatment. Here, the authors identify Connexin43 as target that enhances BRAF/MEKi efficacy by interfering with DNA repair pathways, overcoming drug resistance. They develop an mRNA therapy that improves efficacy and sensitizes resistant cells.

    • Adrián Varela-Vázquez
    • Amanda Guitián-Caamaño
    • María D. Mayán
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • Intermediate-coverage long-read sequencing in 1,019 diverse humans from the 1000 Genomes Project, representing 26 populations, enables the generation of comprehensive population-scale structural variant catalogues comprising common and rare alleles.

    • Siegfried Schloissnig
    • Samarendra Pani
    • Jan O. Korbel
    ResearchOpen Access
    Nature
    Volume: 644, P: 442-452
  • Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

    • Marta Paczkowska
    • Jonathan Barenboim
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • A double-layer lens consists of a first gradient-index/geodesic profile in an upper waveguide, partially surrounded by a mirror that reflects the wave into a lower guide where there is a second profile. A family of such lens profiles are derived.

    • Qiao Chen
    • Simon A. R. Horsley
    • Oscar Quevedo–Teruel
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-12
  • Genetic and functional studies implicate allele-specific regulation of OAS1 splicing and nonsense-mediated decay in COVID-19 severity. The OAS1 risk haplotype is also associated with reduced SARS-CoV-2 clearance in a clinical trial with pegIFN-λ1.

    • A. Rouf Banday
    • Megan L. Stanifer
    • Ludmila Prokunina-Olsson
    ResearchOpen Access
    Nature Genetics
    Volume: 54, P: 1103-1116
  • Entanglement was observed in top–antitop quark events by the ATLAS experiment produced at the Large Hadron Collider at CERN using a proton–proton collision dataset with a centre-of-mass energy of √s  = 13 TeV and an integrated luminosity of 140 fb−1.

    • G. Aad
    • B. Abbott
    • L. Zwalinski
    ResearchOpen Access
    Nature
    Volume: 633, P: 542-547
  • The influence of the El Niño–Southern Oscillation on Atlantic marine systems and fisheries is complex. This Review outlines the mechanisms by which El Niño–Southern Oscillation impacts the tropical and South Atlantic, connecting physical climate perturbations to biogeochemical and ecological responses.

    • Belén Rodríguez-Fonseca
    • Elena Calvo-Miguélez
    • Wenju Cai
    Reviews
    Nature Reviews Earth & Environment
    Volume: 7, P: 43-59
  • In this cross-sectional study, the authors used structural MRI to compare subcortical volumes, cortical thickness and surface area between early-onset anorexia nervosa, avoidant/restrictive food intake disorder and typically developing young individuals.

    • Clara A. Moreau
    • Anael Ayrolles
    • Richard Delorme
    ResearchOpen Access
    Nature Mental Health
    Volume: 3, P: 780-788