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Showing 1–50 of 355 results
Advanced filters: Author: Paul J. Trim Clear advanced filters
  • How strand-asymmetric processes such as replication and transcription interact with DNA damage to drive mechanisms of repair and mutagenesis is explored.

    • Craig J. Anderson
    • Lana Talmane
    • Martin S. Taylor
    ResearchOpen Access
    Nature
    Volume: 630, P: 744-751
  • CFAP20 has a key role in rescuing RNA polymerase II complexes that have arrested during DNA transcription, limiting the accumulation of R-loops and preventing collisions between the transcription and replication machinery.

    • Sidrit Uruci
    • Daphne E. C. Boer
    • Martijn S. Luijsterburg
    ResearchOpen Access
    Nature
    P: 1-10
  • Weak topological insulators (WTI) remain difficult to be observed in experiments. Here, the authors discover a WTI state in RhBi2, where the topological surface states with saddle points result in a van Hove singularity along the (100) direction near Fermi energy.

    • Kyungchan Lee
    • Gunnar F. Lange
    • Adam Kaminski
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-8
  • Extrachromosomal circular DNAs (ecDNAs) are prevalent in human cancers and are thought to drive tumor evolution and drug resistance by amplifying oncogenes. Here, authors develop ec3D to reconstruct three-dimensional ecDNA structures, revealing how their spatial organization rewires regulatory circuits.

    • Biswanath Chowdhury
    • Kaiyuan Zhu
    • Vineet Bafna
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-20
  • Structural and functional studies of Zinc finger antiviral protein and its cofactors, TRIM25 and KHYNYN, reveal the formation of complexes and suggest that multivalent recognition of CpG-rich RNA targets it for nucleolytic depletion.

    • Jennifer A. Bohn
    • Jennifer L. Meagher
    • Paul D. Bieniasz
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-17
  • Optimizations of X-ray nanotomography including the choice of resin allows high-resolution imaging of mouse brain tissue, approaching the resolution of volume electron microscopy. Since it does not require slicing the tissue, this technology may become an attractive alternative to current standard methods for connectomics.

    • Carles Bosch
    • Tomas Aidukas
    • Andreas T. Schaefer
    ResearchOpen Access
    Nature Methods
    Volume: 22, P: 2631-2638
  • The authors show that LARP4 drives T cell dysfunction in tumors by promoting hypertranslation of oxidative phosphorylation-related mRNAs, resulting in mitochondrial dysfunction. They also target LARP4 to enhance T cell persistence and anti-tumor activity and provide a CAR T cell strategy for treating solid and liquid tumors.

    • Yi Liu
    • Haochen Ni
    • Meng Michelle Xu
    Research
    Nature Immunology
    Volume: 26, P: 1488-1500
  • The relationship between superconductivity and antiferromagnetism is an unresolved question in electron-doped high-Tc superconductors. Saadaoui et al. perform low-energy muon spin relaxation measurements to study the phase diagram of La2−xCexCuO4−δat the magnetic-superconducting transition region.

    • H. Saadaoui
    • Z. Salman
    • R. F. Kiefl
    Research
    Nature Communications
    Volume: 6, P: 1-6
  • Transcriptional regulation of the interferon-β gene (Ifnb1) in macrophages is a critical immune event. Here, Ferri et al. show that, at late phases of macrophages activation, TRIM33 bound to a distal repressor element suppresses Ifnb1transcription by preventing recruitment of CBP/p300.

    • Federica Ferri
    • Aude Parcelier
    • Paul-Henri Romeo
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-12
  • Cell state plasticity of neuroblastoma cells is linked to therapy resistance. Here, the authors develop a transcriptomic and epigenetic map of indisulam (RBM39 degrader) resistant neuroblastoma, demonstrating bidirectional cell state switching accompanied by increased NK cell activity, which they therapeutically enhance by the addition of an anti-GD2 antibody.

    • Shivendra Singh
    • Jie Fang
    • Jun Yang
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-26
  • Evolutionary and ecological insights into marine SAR11 bacteria require whole genome data. Here, the authors expand the number of complete SAR11 isolate genomes by 81 new strains from the tropical Pacific Ocean, combining their sequence analysis with metagenomics to further resolve SAR11 evolution.

    • Kelle C. Freel
    • Sarah J. Tucker
    • Michael S. Rappé
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-14
  • Large-scale sequencing and population genomic analyses reveal frequent transmission, a highly admixed global population structure and evidence of pervasive negative selection in Haemophilus influenzae.

    • Neil MacAlasdair
    • Anna K. Pöntinen
    • Jukka Corander
    ResearchOpen Access
    Nature Microbiology
    Volume: 10, P: 3136-3147
  • Dense calcium imaging combined with co-registered high-resolution electron microscopy reconstruction of the brain of the same mouse provide a functional connectomics map of tens of thousands of neurons of a region of the primary cortex and higher visual areas.

    • J. Alexander Bae
    • Mahaly Baptiste
    • Chi Zhang
    ResearchOpen Access
    Nature
    Volume: 640, P: 435-447
  • The brushtail possum is a treasured Australian marsupial, but also a harmful pest introduced into New Zealand. Here, using functional genomics and a new chromosome-level genome assembly of New Zealand possums, Bond et al. quantify their genome admixture and identify unique parent-specific and weaning associated gene expression.

    • Donna M. Bond
    • Oscar Ortega-Recalde
    • Timothy A. Hore
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-17
  • Cancer cells rely on mitochondria for energy and macromolecule synthesis. Here, the authors show that RNA G-quadruplex dynamics, driven by oncogenic signals, regulate the translation of nuclear-encoded mitochondrial mRNAs, affecting mitochondrial function and promoting cancer cell growth.

    • Leïla Dumas
    • Sauyeun Shin
    • Stefania Millevoi
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-22
  • Meat products represent a large share of the carbon footprints of cities, which are dependent on the characteristics of supply regions. With spatially explicit data, researchers show how the so-called carbon hoofprint varies between cities due to the different carbon intensities of producing regions.

    • Benjamin P. Goldstein
    • Rylie E. O. Pelton
    • Joshua P. Newell
    ResearchOpen Access
    Nature Climate Change
    Volume: 15, P: 1190-1197
  • Climate change is expected to impact microbes degrading organic matter in northern peatlands. Here, using a warming experiment, the authors show that communities remain stable after three years of warming, likely due to metabolic versatility and an ability to obtain electron acceptors from organic matter cleavage.

    • Katherine Duchesneau
    • Borja Aldeguer-Riquelme
    • Joel E. Kostka
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Convergent selection between crops can help to identify genetic variants with important roles in adaptation as a source of diversity for the improvement of cultivated species through the concept of inter-crop translational research for breeding.

    • Mamadou Dia Sow
    • Cristian Forestan
    • Jerome Salse
    ResearchOpen Access
    Nature Plants
    Volume: 11, P: 2268-2285
  • Here the authors perform a trans expression quantitative trait locus meta-analysis study of over 3,700 people and link a USP18 variant to expression of 50 inflammation genes and lupus risk, highlighting how genetic regulation of immune responses drives autoimmune disease and informs new therapies.

    • Krista Freimann
    • Anneke Brümmer
    • Kaur Alasoo
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Using SCN2A haploinsufficiency as a proof-of-concept, upregulation of the existing functional gene copy through CRISPR activation was able to rescue neurological-associated phenotypes in Scn2a haploinsufficient mice and human neurons.

    • Serena Tamura
    • Andrew D. Nelson
    • Kevin J. Bender
    Research
    Nature
    Volume: 646, P: 983-991
  • MDM2 and BET inhibitors have shown efficacy in AML treatment. Here, the authors show that the two compounds can synergize through both p53 protein stabilization and inhibition of BRD4-mediated repression of p53 target genes.

    • Anne-Louise Latif
    • Ashley Newcombe
    • Peter D. Adams
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-16
  • Numerous genetic variants, including those located in the non-coding regions of the genome, are known to be associated with blood cells traits. Here, Frontini and colleagues investigate their potential regulatory functions using epigenomic data and promoter long-range interactions.

    • Romina Petersen
    • John J. Lambourne
    • Mattia Frontini
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-12
  • The structure and function of the MCR activation complex from Methanococcus maripaludis were revealed, demonstrating its ATP-dependent ability to activate MCR and form methane while uncovering a unique electron transfer pathway involving iron–sulfur clusters similar to the nitrogenase cofactor intermediates.

    • Fidel Ramírez-Amador
    • Sophia Paul
    • Jan Michael Schuller
    ResearchOpen Access
    Nature
    Volume: 642, P: 814-821
  • Here the authors find a genetic alteration in the popular “Four Core Genotypes” mouse model that is used to distinguish sex-biased phenotypes caused by sex chromosomes and gonads. This alteration increases the expression of some X-linked genes, which might confound the interpretation of the model.

    • Jasper Panten
    • Stefania Del Prete
    • Duncan T. Odom
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-8
  • The molecular basis for the enrollment of X family DNA polymerases in non-homologous end joining (NHEJ) is unclear. Here the authors elucidate the structure of Pol λ within the DNA-PK long-range complex and Pol μ in association with Ku70/80 and characterize the interaction between the BRCT domains of Pol λ and μ with Ku70/80.

    • Philippe Frit
    • Himani Amin
    • Amanda K. Chaplin
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • This study explores the relationship between telomere length and clonal hematopoiesis. Splicing factor and PPM1D gene mutations are more frequent in people with genetically predicted shorter telomere lengths, suggesting that these mutations protect against the consequences of telomere attrition.

    • Matthew A. McLoughlin
    • Sruthi Cheloor Kovilakam
    • George S. Vassiliou
    ResearchOpen Access
    Nature Genetics
    Volume: 57, P: 2215-2225
  • Exploring the molecular consequences of exposing mice to social stress, Lyons et al. identify that hippocampal and cortical neurons acquire features of senescence, identifying a mechanism through which the social environment may contribute to aging.

    • Carey E. Lyons
    • Jean Pierre Pallais
    • Alessandro Bartolomucci
    Research
    Nature Aging
    Volume: 5, P: 48-64
  • The viral delivery of a miniaturized form of a master protein that establishes dyads (nanostructures involved in excitation–contraction coupling in cardiomyocytes) improved dyad architecture and normalized cardiac function under pressure overload.

    • Fujian Lu
    • Carter Liou
    • William T. Pu
    Research
    Nature Biomedical Engineering
    Volume: 9, P: 730-741
  • Whole-genome bisulfite sequencing along with whole-genome and transcriptome sequencing of 100 prostate cancer metastases identifies genomic regions that are differentially methylated during disease progression and a novel epigenomic subtype.

    • Shuang G. Zhao
    • William S. Chen
    • Felix Y. Feng
    Research
    Nature Genetics
    Volume: 52, P: 778-789
  • New class of topological crystalline insulators (TCI) have been proposed, but are yet to be experimentally evidenced. Here, the authors evidence two massless Dirac fermions protected by the combination of time-reversal symmetry T and Ĉ2y on the (010) surface of SrPb, confirming the Ĉ2 rotation anomaly in the new class of TCIs.

    • Wenhui Fan
    • Simin Nie
    • Hong Ding
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-7
  • Early cancer detection by cell-free DNA (cfDNA) is challenged by the low amount of tumour DNA in cfDNA, tumour heterogeneity and the small patient cohorts. Here, the authors develop a method, cfMethyl-Seq, for cost-effective methylome profiling of cfDNA and for detecting and locating cancer.

    • Mary L. Stackpole
    • Weihua Zeng
    • Xianghong Jasmine Zhou
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-12
  • Pro-inflammatory signaling during embryonic development is poorly understood. Here, the authors identify that the master inflammatory factor p65 drives cycles of cell quiescence and proliferation to power the development of hematopoietic stem cells.

    • Clyde A. Campbell
    • Rodolfo Calderon
    • Raquel Espin-Palazon
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-22
  • A case–control study investigating the causes of recent cases of acute hepatitis of unknown aetiology in 32 children identifies an association between adeno-associated virus infection and host genetics in disease susceptibility.

    • Antonia Ho
    • Richard Orton
    • Emma C. Thomson
    Research
    Nature
    Volume: 617, P: 555-563
  • Although individual genes that distinguish tumor-reactive CD8+ T cells from bystander T cells in tumors have been described, a functionally meaningful integrative signature has not been established. Here authors show that mutation-associated neoantigen-specific CD8+ tumor-infiltrating lymphocytes can be recognized by MANAscore, an algorithm that uses weighted expression levels of CXCL13, ENTPD1 and IL7R in single-cell RNAseq datasets of lung cancer and melanoma patients as input.

    • Zhen Zeng
    • Tianbei Zhang
    • Kellie N. Smith
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Designed novel protein nanoparticle technology integrates antibody targeting and responds to changes in environmental conditions to release protected molecular cargoes, opening new applications for precision medicine.

    • Erin C. Yang
    • Robby Divine
    • David Baker
    ResearchOpen Access
    Nature Structural & Molecular Biology
    Volume: 31, P: 1404-1412
  • The function of macrophages in myeloid leukaemia can be difficult to assess because of lack of differentiation between transformed and non-transformed cells. Here the authors use a chimeric mouse model to characterise the effect of myeloid leukaemia on bystander macrophages noting altered functional properties of these cells.

    • Amy Dawson
    • Martha M. Zarou
    • G. Vignir Helgason
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-19
  • Patient-derived xenografts are important tools for cancer drug development. Here, the authors develop models from 22 non-small cell lung cancer patients. They show genomic differences between models created from different spatial regions of tumours and a bottleneck on model establishment.

    • Robert E. Hynds
    • Ariana Huebner
    • Charles Swanton
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21