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Showing 1–50 of 754 results
Advanced filters: Author: Alex R. Zhang Clear advanced filters
  • Effective target engagement of drugs relies on them achieving sufficient intracellular concentrations. Here, using a multimodal imaging pipeline the authors demonstrate that uneven distribution and uptake of PARP inhibitors in ovarian cancer patient-derived explant models correlates with therapeutic response.

    • Carmen R. Moncayo
    • Restuadi Restuadi
    • Louise Fets
    ResearchOpen Access
    Nature Communications
    P: 1-19
  • Membrane-based separation methods are promising for ion extraction, though current commercial membranes have unfavorable selectivity among similar ions. Here the authors design a crown-ether based membrane for preferential separation of potassium ions in mixtures of monovalent and divalent cations.

    • Luis Francisco Villalobos
    • Junwei Zhang
    • Menachem Elimelech
    ResearchOpen Access
    Nature Communications
    P: 1-12
  • Robustness checks and reproduction of analyses with existing and updated data based on 110 articles in economics and political science journals with data and code-sharing requirements found high levels of robustness and reproducibility and determined that robustness was not dependent on author characteristics or data availability.

    • Abel Brodeur
    • Derek Mikola
    • Yaolang Zhong
    Research
    Nature
    Volume: 652, P: 151-156
  • The 4D Nucleome Project demonstrates the use of genomic assays and computational methods to measure genome folding and then predict genomic structure from DNA sequence, facilitating the discovery of potential effects of genetic variants, including variants associated with disease, on genome structure and function.

    • Job Dekker
    • Betul Akgol Oksuz
    • Feng Yue
    ResearchOpen Access
    Nature
    Volume: 649, P: 759-776
  • It is unclear whether the harsh abiotic conditions of drylands hinder biological invasions. This global analysis shows that drylands are vulnerable to non-native plants and are likely to become more so as native plant diversity declines and grazing pressure intensifies.

    • Soroor Rahmanian
    • Nico Eisenhauer
    • Fernando T. Maestre
    Research
    Nature Ecology & Evolution
    Volume: 10, P: 523-535
  • The APOE-ε4 allele is the strongest genetic risk factor for late-onset Alzheimer’s disease, but it is not deterministic. Here, the authors show that common genetic variation changes how APOE-ε4 influences cognition.

    • Alex G. Contreras
    • Skylar Walters
    • Timothy J. Hohman
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-17
  • Newly emerging SARS-CoV-2 variants underscore the need for broad-spectrum antiviral solutions. This study shows a macrocyclic peptide inhibitor that locks the SARS-CoV-2 spike trimer into a “closed” conformation by engaging a conserved region, and demonstrates that intranasal administration of the peptide inhibitor protects against Omicron variants.

    • Min Wang
    • Jinyue Yang
    • Yi Shi
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-13
  • Quantum range finding struggles in bright background and at long distance. Here, the authors demonstrate a quantum-inspired, energy-time correlated classical rangefinder. It preserves quantum noise suppression, works at low power, and enables robust daylight remote ranging in real-world environments

    • Weijie Nie
    • Peide Zhang
    • John G. Rarity
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-8
  • Defining the spatial organization of tissues and organs like the brain from large datasets is a major challenge. Here, authors introduce CellTransformer, an AI tool that defines spatial domains in the mouse brain based on spatial transcriptomics, a technology that measures which genes are active in different parts of tissue.

    • Alex J. Lee
    • Alma Dubuc
    • Reza Abbasi-Asl
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Typical quantum error correcting codes assign fixed roles to the underlying physical qubits. Now the performance benefits of alternative, dynamic error correction schemes have been demonstrated on a superconducting quantum processor.

    • Alec Eickbusch
    • Matt McEwen
    • Alexis Morvan
    ResearchOpen Access
    Nature Physics
    Volume: 21, P: 1994-2001
  • Bioactivity benchmarks are key to evaluating and improving methods to predict chemicals’ specific biological activity. Here, the authors find existing benchmarks poorly suit this goal; their assays are often well-predicted simply by counting cells. They propose new guidelines and curated benchmarks.

    • Srijit Seal
    • William Dee
    • Anne E. Carpenter
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-21
  • Here the authors perturb genes linked to schizophrenia risk in human neurons. They find that single perturbations share common downstream effects on gene networks, while joint perturbations result in downstream effects being saturated.

    • PJ Michael Deans
    • Kayla G. Retallick-Townsley
    • Kristen J. Brennand
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-23
  • Genomic analyses applied to 14 childhood- and adult-onset psychiatric disorders identifies five underlying genomic factors that explain the majority of the genetic variance of the individual disorders.

    • Andrew D. Grotzinger
    • Josefin Werme
    • Jordan W. Smoller
    ResearchOpen Access
    Nature
    Volume: 649, P: 406-415
  • Metastatic triple negative breast cancer (mTNBC) has limited treatments options. Here, this group presents a combination of low-dose cyclophosphamide, anti-CSF1R, and anti-PD-1 therapies to boost immune cell infiltration and reduce recurrence in aggressive TNBC models.

    • Diego A. Pedroza
    • Xueying Yuan
    • Jeffrey M. Rosen
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-20
  • The inter-system crossing induced by selenium may undesirably enhance formation of triplet excitons in non-fullerene acceptors, leading to increased non-radiative losses. Here, the authors introduce achiral N-alkyl substituents, achieving maximum efficiency of 20.4% for ternary organic solar cells.

    • Feng Qi
    • Qian Li
    • Alex K.-Y. Jen
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-10
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477
  • Chen et al. report a tailored self-assembled monolayer to create a localized 2D/3D perovskite heterojunction. This strategy reduces interfacial loss, achieving photovoltages >90% of thermodynamic limit for wide-bandgap cells, and enables perovskite-organic tandem solar cells with efficiency of 27.11%.

    • Mingqian Chen
    • Wenlin Jiang
    • Alex K.-Y. Jen
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-11
  • Jia et al. compared the performance of 4 counterfactual screening strategies: co-testing, HPV primary with liquid-based cytology (LBC) triage, HPV-only, and LBC-only. They show that LBC-only detects fewer CIN2+ cases yet still increased referrals while HPV-only reduces referrals but had a lower CIN2+ detection rate.

    • Xinhua Jia
    • Xi’ao Da
    • Youlin Qiao
    ResearchOpen Access
    Communications Medicine
    P: 1-9
  • This scoping review examines previous experience in performing silent evaluations of clinical AI applications, collecting evidence from 75 studies on implementation features and the sociotechnical context.

    • Lana Tikhomirov
    • Carolyn Semmler
    • Melissa D. McCradden
    ResearchOpen Access
    Nature Health
    P: 1-23
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Geospatial estimates of the prevalence of anemia in women of reproductive age across 82 low-income and middle-income countries reveals considerable heterogeneity and inequality at national and subnational levels, with few countries on track to meet the WHO Global Nutrition Targets by 2030.

    • Damaris Kinyoki
    • Aaron E. Osgood-Zimmerman
    • Simon I. Hay
    ResearchOpen Access
    Nature Medicine
    Volume: 27, P: 1761-1782
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • Experimental measurements of high-order out-of-time-order correlators on a superconducting quantum processor show that these correlators remain highly sensitive to the quantum many-body dynamics in quantum computers at long timescales.

    • Dmitry A. Abanin
    • Rajeev Acharya
    • Nicholas Zobrist
    ResearchOpen Access
    Nature
    Volume: 646, P: 825-830
  • Tuning surface charge and polymer length enables PEG-grafted nanoparticles to assemble into cubic superlattices resembling ZnS, NaCl, CsCl, simple cubic and diamond, offering a programmable route to valence-free crystals.

    • Binay P. Nayak
    • Wenjie Wang
    • David Vaknin
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-9
  • Whole-genome sequencing, transcriptome-wide association and fine-mapping analyses in over 7,000 individuals with critical COVID-19 are used to identify 16 independent variants that are associated with severe illness in COVID-19.

    • Athanasios Kousathanas
    • Erola Pairo-Castineira
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 607, P: 97-103
  • In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

    • Yiqun Zhang
    • Fengju Chen
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • MATTERIX, a multiscale graphics processing unit-accelerated framework for high-fidelity digital twins and workflows of chemistry laboratories, is presented, simulating robot and device operation, fluids and powders, and processes such as heat transfer and chemical kinetics.

    • Kourosh Darvish
    • Arjun Sohal
    • Animesh Garg
    Research
    Nature Computational Science
    Volume: 6, P: 67-82
  • Examining human brain organoids and ex vivo neonatal murine cortical slices demonstrates that structured neuronal sequences emerge independently of sensory input, highlighting the potential of brain organoids as a model for neuronal circuit assembly.

    • Tjitse van der Molen
    • Alex Spaeth
    • Tal Sharf
    Research
    Nature Neuroscience
    Volume: 29, P: 123-135
  • Efficient and durable energy storage is vital for renewable integration. Here, the authors design an aqueous iron-cerium redox flow battery using a universal complexing agent that enhances stability and efficiency, achieving long cycle life and high performance in neutral conditions.

    • Jiahui Yang
    • Wei Wei
    • Zhenyu Sun
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-10