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Showing 1–50 of 412 results
Advanced filters: Author: Katherine Bond Clear advanced filters
  • Despite the existence of many N–N-containing natural metabolites, little is known about the enzymatic mechanisms of N–N bond formation. Now, a catalytically relevant X-ray crystal structure of an N–N-bond-forming enzyme, PipS, is reported and detailed insights into its catalytic mechanism are provided.

    • Melanie A. Higgins
    • Xinjie Shi
    • Katherine S. Ryan
    Research
    Nature Catalysis
    Volume: 8, P: 207-217
  • The study reveals a ‘chemocentric’ strategy for identifying charged molecular glue degraders, through discovering a bromodomain-binding molecular glue degrader prodrug that is metabolically activated in cells to recruit the YPEL5-CTLH E3 ligase.

    • Zhe Zhuang
    • Woong Sub Byun
    • Nathanael S. Gray
    ResearchOpen Access
    Nature Chemical Biology
    P: 1-10
  • Petroleum-based adhesives are used ubiquitously in daily life and therefore contribute to persistent waste generation. Here the authors synthesize a robust and strong poly(ester amide) adhesive that can be derived from biomass feedstocks and chemically recycled at the end of its life.

    • Xin Liu
    • Katherine L. Harry
    • Garret M. Miyake
    Research
    Nature Sustainability
    Volume: 9, P: 450-458
  • Characterization of the heme-dependent enzyme KtzT reveals it to be the elusive enzyme responsible for nitrogen–nitrogen bond formation during the biosynthesis of piperazate, a building block for some nonribosomal peptide natural products.

    • Yi-Ling Du
    • Hai-Yan He
    • Katherine S Ryan
    Research
    Nature Chemical Biology
    Volume: 13, P: 836-838
  • Pyridoxal 5-phosphate (PLP) is an essential coenzyme involved in diverse amino acid transformations. The discovery that Ind4 catalyzes the PLP-dependent oxidation of an unactivated carbon of L-arginine, as a part of the indolmycin biosynthetic pathway, expands the scope of reactions facilitated by PLP-dependent enzymes.

    • Yi-Ling Du
    • Rahul Singh
    • Katherine S Ryan
    Research
    Nature Chemical Biology
    Volume: 12, P: 194-199
  • Molecular glue degraders have consistently been discovered retrospectively, despite their increasing importance. Herein, a high-throughput approach is described that modifies existing ligands into molecular glue degraders.

    • James B. Shaum
    • Miquel Muñoz i Ordoño
    • Michael A. Erb
    ResearchOpen Access
    Nature Chemical Biology
    P: 1-13
  • Tiny protein crystals often evade X-ray methods. Here, authors solved the seed protein crambin at 0.85 Å by ab initio MicroED from 58 self-formed nanocrystals on standard 200 kV hardware, resolving hydrogen atoms using anisotropy-aware merging.

    • Purna Chandra Rao Vasireddy
    • Timothy Low-Beer
    • Michael W. Martynowycz
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-8
  • Negamycin is a decades-old antibiotic that can promote readthrough of premature stop codons and possesses a structure that contains an unusual N–N bond. Now, the long-mysterious negamycin gene cluster has been identified and characterized to reveal a heme-dependent enzyme that directly couples glycine and nitrite to form the N–N linkage.

    • Menghua Wang
    • Zi-Wang Wei
    • Katherine S. Ryan
    Research
    Nature Chemical Biology
    Volume: 21, P: 1012-1020
  • The transcription factor ATF4 and its effector lipocalin 2 (LCN2) have a key role in immune evasion and tumour progression, and targeting the ATF4–LCN2 axis might provide a way to treat several types of solid tumour by increasing anti-cancer immunity.

    • Jozef P. Bossowski
    • Ray Pillai
    • Thales Papagiannakopoulos
    ResearchOpen Access
    Nature
    P: 1-10
  • KRAS is an oncogene that switches between a GDP-bound inactive state and a GTP-bound active state. Recently developed KRAS G12C inhibitors are specific to the GDP-bound inactive state. Here, the authors develop a class of covalent KRAS G12C inhibitors capable of targeting both states for the treatment of KRAS-driven cancer.

    • Matthew L. Condakes
    • Zhuo Zhang
    • Michelle L. Stewart
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-15
  • Although biosynthetic pathways of selenium-containing macromolecules have been known for decades, pathways for specific incorporation of selenium into small molecules have only recently begun to be uncovered. Now the selenometabolome is expanded further through the discovery and biosynthetic elucidation of ovoselenol, a selenium-containing antioxidant found in marine microorganisms.

    • Chase M. Kayrouz
    • Kendra A. Ireland
    • Mohammad R. Seyedsayamdost
    Research
    Nature Chemistry
    Volume: 16, P: 1868-1875
  • The deactivation of CO2 reduction electrocatalyst in microbial media remains a key barrier for hybrid bio-electrochemical systems. Here, the authors present a bioadaptive nickel single atom catalyst that resists organic poisoning to enable high-rate CO-mediated isopropanol production from CO2.

    • Guangye Zhou
    • Jonathan R. Humphreys
    • Zhiyong Jason Ren
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-11
  • H2O, a primary proton donor, governs CO2 reduction pathways and regulates selectivity, yet its coordination effects remain elusive. By exploiting the long-range structural order and porosity of crystalline coordination frameworks, this work uncovers how coordinated H2O influences CO2 reduction.

    • Huilin Qing
    • Evan Cline
    • Weiyang Li
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • Bioactivity benchmarks are key to evaluating and improving methods to predict chemicals’ specific biological activity. Here, the authors find existing benchmarks poorly suit this goal; their assays are often well-predicted simply by counting cells. They propose new guidelines and curated benchmarks.

    • Srijit Seal
    • William Dee
    • Anne E. Carpenter
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-21
  • Alkynes found in natural products are typically assembled by metal-dependent enzymes. The enzyme BesB instead forms a terminal alkyne-containing amino acid using pyridoxal phosphate as a cofactor. Here, the authors use structural and mechanistic investigations to identify the key features of BesB that allow it to carry out its fascinating chemistry.

    • Jason B. Hedges
    • Jorge A. Marchand
    • Katherine S. Ryan
    Research
    Nature Chemical Biology
    Volume: 22, P: 77-86
  • EGFR inhibitors are standard of care in patients with EGFR-mutant non-small cell lung cancer (NSCLC) but resistance often develops. Here the authors report that the evolution of EGFR inhibitor resistance in EGFR-mutant NSCLC results in a sensitivity to the compound, MCB-613, and investigate the underlying mechanism of action.

    • Christopher F. Bassil
    • Kerry Dillon
    • Kris C. Wood
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-20
  • The ferroptosis suppressor protein FSP1 has a critical role in ferroptosis protection of tumours across multiple in vivo models and is linked to worse prognosis in human lung adenocarcinoma, suggesting its potential as a therapeutic target in lung cancer.

    • Katherine Wu
    • Alec J. Vaughan
    • Thales Papagiannakopoulos
    ResearchOpen Access
    Nature
    Volume: 649, P: 487-495
  • The BAM complex is assisted by periplasmic chaperones, such as SurA, in its folding and insertion of proteins into the bacterial outer membrane. Here, the authors use disulphide bond engineering to trap transient protein complexes and solve their cryoEM structures to shed light on the cycle of SurA arrival, OMP delivery, and handover to BAM.

    • Katherine L. Fenn
    • Jim E. Horne
    • Neil A. Ranson
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-17
  • Engineering polymerases to synthesize alternative genetic polymers remains a challenging problem in synthetic biology. The current study offers insights into the structural and biochemical changes responsible for improving the fidelity and catalytic activity of a laboratory evolved TNA polymerase.

    • Mohammad Hajjar
    • Victoria A. Maola
    • John C. Chaput
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-14
  •  A method for topological automatic cell type classification across subcellular resolution spatial transcriptomic platforms is proposed, resolving cell type information and locating sparsely dispersed cells in human kidney and mouse kidney and brain.

    • Katherine Benjamin
    • Aneesha Bhandari
    • Katherine R. Bull
    ResearchOpen Access
    Nature
    Volume: 630, P: 943-949
  • An in-depth analysis of tissue biopsies from patients with multiple myeloma and CAR T cell therapy-associated immune-related adverse events (CirAEs) after treatment with commercial BCMA-targeted CAR T cell therapy shows that CD4+ CAR T cells mediate off-tumor toxicities and that high CD4:CD8 ratio at apheresis, robust early CAR T cell expansion, ICANS and ciltacabtagene autoleuce treatment are independently associated with the development of CirAEs.

    • Matthew Ho
    • Luca Paruzzo
    • Joseph A. Fraietta
    Research
    Nature Medicine
    Volume: 32, P: 702-716
  • The extent to which human bacterial pathogens broadly utilize ergothioneine as an antioxidant is unknown. Here, authors describe the discovery of a specific transporter for ergothioneine in a respiratory pathogen that is highly conserved among Firmicutes.

    • Yifan Zhang
    • Giovanni Gonzalez-Gutierrez
    • David P. Giedroc
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-15
  • Engineered polyketide synthases historically have little to no activity. Here, the authors use updated modules from the pikromycin synthase to make 155 synthases, showing that the updated module has a higher success rate, but that ketosynthase gatekeeping and module skipping can prevent function.

    • Katherine A. Ray
    • Joshua D. Lutgens
    • Adrian T. Keatinge-Clay
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • CDK4/6 inhibitors are promising treatments for ER+ breast cancer, however resistance remains a challenge. Here, the authors analyse the NeoPalANA cohort and indicate that a 33 gene signature was predictive of response to neoadjuvant anastrozole and palbociclib.

    • Tim Kong
    • Alex Mabry
    • Cynthia X. Ma
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-17
  • Results of an early-phase breast cancer prevention trial demonstrate the potential for breast cancer prevention in premenopausal women with anti-progestin therapy by inducing epithelial–stromal remodelling and suppression of luminal progenitors.

    • Bruno M. Simões
    • Robert Pedley
    • Sacha J. Howell
    ResearchOpen Access
    Nature
    Volume: 648, P: 736-745
  • Current proteolysis-targeting chimeras can promote the ubiquitination and subsequent degradation of both target and off-target proteins by inducing their respective proximity with the cereblon ubiquitin ligase. Now, by developing and deploying an off-target profiling platform, ‘bumped proteolysis-targeting chimeras’ can maintain on-target degradation efficacy with reduced off-targets.

    • Tuan M. Nguyen
    • Vedagopuram Sreekanth
    • Amit Choudhary
    Research
    Nature Chemistry
    Volume: 16, P: 218-228
  • Using structural, biochemical, and functional assays, the authors demonstrate that the E3 ligase KLHDC2, via newly developed small-molecule ligands, can be co-opted to target critical targets for degradation.

    • Christopher M. Hickey
    • Katherine M. Digianantonio
    • Miklós Békés
    Research
    Nature Structural & Molecular Biology
    Volume: 31, P: 311-322
  • An einsteinium coordination complex is synthesized and spectroscopically characterized using less than 200 nanograms of einsteinium, enabling examination of its structure and measurement of an einsteinium bond distance.

    • Korey P. Carter
    • Katherine M. Shield
    • Rebecca J. Abergel
    Research
    Nature
    Volume: 590, P: 85-88
  • Mucosal administration of a multivalent, adjuvanted vaccine against Clostridioides difficile promoted bacterial clearance and protected against morbidity, mortality, tissue damage and recurrence in mice.

    • Audrey K. Thomas
    • F. Christopher Peritore-Galve
    • D. Borden Lacy
    ResearchOpen Access
    Nature
    P: 1-9
  • Researchers studied the blood-based metabolome of over 23,000 people from ten ethnically diverse cohorts. They identified 235 metabolites associated with future risk of type 2 diabetes (T2D). By integrating genetic and modifiable lifestyle factors, their findings provide insights into T2D mechanisms and could improve risk prediction and inform precision prevention.

    • Jun Li
    • Jie Hu
    • Qibin Qi
    ResearchOpen Access
    Nature Medicine
    Volume: 32, P: 660-670
  • Understanding how materials respond to impacts at extreme strain rates is crucial, yet current approaches present significant challenges. Here, the authors report the use of a mechanophore-functionalized block copolymer to encode and report energy dissipation mechanisms in response to impacts.

    • Polette J. Centellas
    • Kyle D. Mehringer
    • Edwin P. Chan
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-10
  • Spin-polarized defects in 2D materials are attracting attention for future quantum technology applications, but their controlled fabrication is still challenging. Here, the authors report the creation and characterization of effective spin 1/2 defects via the atomically-precise generation of magnetic carbon radical ions in 2D WS2.

    • Katherine A. Cochrane
    • Jun-Ho Lee
    • Bruno Schuler
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-10
  • Structural studies of the itch receptors MRGPRX2 and MRGPRX4 in complex with endogenous and synthetic ligands provide a basis for the development of therapeutic compounds for pain, itch and mast cell-mediated hypersensitivity.

    • Can Cao
    • Hye Jin Kang
    • Bryan L. Roth
    Research
    Nature
    Volume: 600, P: 170-175
  • Biochemical and structural analysis, combined with metadynamics simulations, illustrate how a single amino acid substitution switches a β-glycosidase from a double SN2 mechanism to a front-face SNi-like mechanism.

    • Javier Iglesias-Fernández
    • Susan M Hancock
    • Benjamin G Davis
    Research
    Nature Chemical Biology
    Volume: 13, P: 874-881