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Showing 1–50 of 1992 results
Advanced filters: Author: Mark P. Running Clear advanced filters
  • Calcium imaging of mouse hippocampal neurons while mice learn a reward-based task over several weeks provides insight into the evolution of the hippocampal reward representation during extended periods of experience.

    • Mohammad Yaghoubi
    • M. Ganesh Kumar
    • Mark P. Brandon
    Research
    Nature
    P: 1-7
  • Climate change can alter when and how animals grow, breed, and migrate, but it is unclear whether this allows populations to persist. This global study shows that shifts in seasonal timing are key to helping vertebrate species maintain population growth under global warming.

    • Viktoriia Radchuk
    • Carys V. Jones
    • Martijn van de Pol
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-14
  • Sosa et al. find that hippocampal neural activity in mice encodes both environmental location and experience relative to rewards, spanning distances far from reward, through parallel and flexible population-level codes.

    • Marielena Sosa
    • Mark H. Plitt
    • Lisa M. Giocomo
    ResearchOpen Access
    Nature Neuroscience
    Volume: 28, P: 1497-1509
  • Linking prior epigenetic status to future outcomes remains a challenge. Here, authors show recording neuronal enhancer activity across postnatal development in mice reveals loci that predict and can be manipulated to modify acute seizure response.

    • Benjamin D. Boros
    • Mariam A. Gachechiladze
    • Timothy M. Miller
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-14
  • This study provides new insights into the role of endoglin (ENG) as a co-receptor in endothelial cells and addresses a gap-in-knowledge on how ENG could be involved in both TGF-β and BMP9 signalling. Such knowledge greatly facilitates therapeutic targeting of ENG-related pathways.

    • Jingxu Guo
    • Karolina Kostrzyńska
    • Wei Li
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-20
  • An astrometric analysis of Gaia data identified two waves of massive runaway stars that have been dynamically ejected from the young cluster R136 in the Large Magellanic Cloud.

    • Mitchel Stoop
    • Alex de Koter
    • Steven Rieder
    Research
    Nature
    Volume: 634, P: 809-812
  • The authors introduce a cost-efficient, non-additive genome-wide association study pipeline that, when applied to a dominant analysis of 2329 phenotypes in 500,349 individuals, reduced computational costs from $27,000 to $39 and identified 781 new associations.

    • Ivan Molotkov
    • Mitja Kurki
    • Mykyta Artomov
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-13
  • High-resolution satellite data enables a unique verification of national methane emissions worldwide. Global estimates are 63 Tg a−1 for oil-gas, 30% higher than the UNFCCC reports due to under-reporting by four largest emitters, and 33 Tg a−1 for coal, consistent with previous estimates.

    • Lu Shen
    • Daniel J. Jacob
    • Jintai Lin
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-9
  • Genomic analyses applied to 14 childhood- and adult-onset psychiatric disorders identifies five underlying genomic factors that explain the majority of the genetic variance of the individual disorders.

    • Andrew D. Grotzinger
    • Josefin Werme
    • Jordan W. Smoller
    ResearchOpen Access
    Nature
    Volume: 649, P: 406-415
  • SpbK protects Bacillus subtilis from phage infection by depleting NAD⁺. In this study, the authors uncover the molecular mechanisms underlying SpbK’s self association-dependent NADase activity and its activation by the SPβ phage portal protein YonE.

    • Biswa P. Mishra
    • Christian L. Loyo
    • Thomas Ve
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-16
  • CD27 is a key T-cell costimulatory receptor, but efforts to target CD27 have been limited by the poor clinical efficacy of first-generation anti-CD27 antibodies. The authors here engineer higher-valency antibodies by more effectively engaging CD27 and selectively binding to FcγRIIB, which enhance anti-tumor activity.

    • Marcus A. Widdess
    • Anastasia Pakidi
    • Aymen Al-Shamkhani
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-15
  • Current single-cell RNA sequencing methods struggle to comprehensively profile transcriptomes, with many lowly expressed transcripts remaining undetected. Here authors present a workflow for enhancing the detection of both transcripts and regions of interest in combination with a standard transcriptome profile.

    • Giulia Moro
    • Izaskun Mallona
    • Konrad Basler
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-22
  • Here the authors show that tissue-resident memory and exhausted T cells in tumors are distinct populations that are shaped by relative presence or absence of TCR signals, suggesting that a tailored therapeutic strategy is needed to target each subset.

    • Thomas N. Burn
    • Jan Schröder
    • Laura K. Mackay
    ResearchOpen Access
    Nature Immunology
    Volume: 27, P: 98-109
  • The physiological role of GDF15 remains poorly defined. Here, the authors show that circulating GDF15 increases in response to prolonged exercise, but that this exercise-induced GDF15, unlike pharmacological GDF15, does not affect post-exercise food intake or exercise motivation.

    • Anders B. Klein
    • Trine S. Nicolaisen
    • Christoffer Clemmensen
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-9
  • The evolution of insecticide resistance in the major malaria vector, Anopheles gambiae, remains an important issue in sustainable malaria control in Africa. Here, the authors present a framework for identifying resistance mechanisms before they arise in field mosquito populations. The findings have implications for public health surveillance and vector control.

    • Sofia Balaska
    • Linda Grigoraki
    • Hanafy M. Ismail
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Recently published results from a Phase I trial showed the blood brain barrier could be transiently opened in glioblastoma patients using low-intensity ultrasound and microbubbles. Here, the authors develop a microfluidic chip to capture tumour-derived extracellular vesicles and particles in response to paclitaxel treatment.

    • Mark W. Youngblood
    • Abha Kumari
    • Adam M. Sonabend
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Landsat satellite images reveal coherent interannual beach narrowing and widening across California in response to changes in central North Pacific wave power, with no 1985-2021 statewide mean shoreline loss. Low wave power (beach widening) correlates poorly with the El Niño climate index.

    • William C. O’Reilly
    • Mark A. Merrifield
    • R. T. Guza
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • A key component of quantum error correction is the decoding algorithm, which needs to be accurate but also with a computational overhead that doesn’t lead to backlogs and allows fast logical clock rates. Here, the authors show an FPGA-driven decoder featuring a coarse-grained parallel architecture and on-the-fly error model updates, allowing both high accuracy and real-time operation.

    • Abbas B. Ziad
    • Ankit Zalawadiya
    • Mark L. Turner
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • Across a global dataset of over 11,000 naturalized alien plant species, the authors find that species are likely to naturalize both in regions with climates and floras similar to those in their native ranges, and in regions with a lower diversity or stronger human impact than in their native range.

    • Shu-ya Fan
    • Trevor S. Fristoe
    • Mark van Kleunen
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • An initial draft of the human pangenome is presented and made publicly available by the Human Pangenome Reference Consortium; the draft contains 94 de novo haplotype assemblies from 47 ancestrally diverse individuals.

    • Wen-Wei Liao
    • Mobin Asri
    • Benedict Paten
    ResearchOpen Access
    Nature
    Volume: 617, P: 312-324
  • Translation initiation and elongation factors can be targets for cancer treatment. Here, the authors show that inhibiting translation elongation through eIF5A impairs mitochondrial function, slowing the proliferation of tumour cells.

    • Aristeidis P. Sfakianos
    • Rebecca M. Raven
    • Anne E. Willis
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Adjuvants are an important component of modern vaccines. Here, the authors employ a phenotypic screen of ~200k compounds and identify PVP-057, a TLR3 agonist with a simple scalable 3-step synthesis, as an adjuvant that induces durable humoral and cellular immunity to varicella-zoster virus (VZV) gE in mice.

    • Branden Lee
    • Danica Dong
    • David J. Dowling
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-17
  • Head and neck squamous cell carcinoma (HNSCC) frequency and risk factors vary considerably across regions and ancestries. Here, the authors conduct a multi-ancestry genome-wide association study and fine mapping study of HNSCC subsites in cohorts from multiple continents, finding susceptibility and protective loci, gene-environment interactions, and gene variants related to immune response.

    • Elmira Ebrahimi
    • Apiwat Sangphukieo
    • Tom Dudding
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • By leveraging microcavity-integrated photonics and Kerr-induced optical frequency division, an integrated photonic millimetre-wave oscillator with low phase noise is demonstrated, achieving –77 dBc Hz–1 and –121 dBc Hz–1, respectively, at 100-Hz and 10-kHz offset frequencies, corresponding to –98 dBc Hz–1 and –142 dBc Hz–1 when scaled to a 10-GHz carrier.

    • Shuman Sun
    • Mark W. Harrington
    • Xu Yi
    Research
    Nature Photonics
    Volume: 19, P: 637-642
  • Neural mechanisms underlying representational drift are not fully understood. Here authors report that the preferred orientation of mouse visual cortex neurons drifts over time. Altering visual experience does not change drift magnitude, but rather its direction, such that neurons’ tuning matches the statistics of the environment.

    • Joel Bauer
    • Uwe Lewin
    • Mark Hübener
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • The authors report on the implementation of a data-efficient machine learning approach to predict plasma dynamics. This enables offline design of robust trajectories to terminate the plasma without disruptive instabilities. Experimental results at the TCV tokamak show statistically significant improvements in key figures of merit and the ability to a priori predict the dynamics of key plasma properties.

    • Allen M. Wang
    • Alessandro Pau
    • Stefano Marchioni
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • This study describes the integrative analysis of 111 reference human epigenomes, profiled for histone modification patterns, DNA accessibility, DNA methylation and RNA expression; the results annotate candidate regulatory elements in diverse tissues and cell types, their candidate regulators, and the set of human traits for which they show genetic variant enrichment, providing a resource for interpreting the molecular basis of human disease.

    • Anshul Kundaje
    • Wouter Meuleman
    • Manolis Kellis
    ResearchOpen Access
    Nature
    Volume: 518, P: 317-330
  • How DNA Polymerase Epsilon accomplishes continuous leading strand synthesis during DNA replication is not understood. Here, the authors describe a two tiers mechanism required to sustain Pol Epsilon processivity: CHTF18-dependent loading of PCNA at leading strand and dsDNA binding by its POLE3-POLE4 subunits.

    • Alessandro Agnarelli
    • Lauryn Buckley-Benbow
    • Roberto Bellelli
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-18
  • Hepatitis C virus (HCV) variability and its phenotypic consequences aren’t well studied in relation to viral replication fitness and disease severity. Here, the authors identify a replication-enhancing domain in non-structural protein 5A, linking high replication fitness to severe disease outcomes, with implications for understanding HCV pathogenesis in immunocompromised patients.

    • Paul Rothhaar
    • Tomke Arand
    • Volker Lohmann
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • The variability in clinical outcomes of SARS-CoV-2 infection is partly due to deficiencies in production or response to type I interferons (IFN). Here, the authors describe a FIP200-dependent lysosomal degradation pathway, independent of canonical autophagy and type I IFN, that restricts SARS-CoV-2 replication, offering insights into critical COVID-19 pneumonia mechanisms.

    • Lili Hu
    • Renee M. van der Sluis
    • Trine H. Mogensen
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-23
  • Eosinophils exist as a functionally heterogeneous population. Whether the heterogeneity is driven by cell-intrinsic or extrinsic factors is underexplored. Here, by leveraging single-cell transcriptomic data and epigenomic analysis, the authors propose that local environmental cues define the gene expression program of murine esophageal eosinophils and identify AP-1 family members, including ATF3, as key regulators of gene expression.

    • Jennifer M. Felton
    • Lee E. Edsall
    • Marc E. Rothenberg
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • Using sequencing and haplotype-resolved assembly of 65 diverse human genomes, complex regions including the major histocompatibility complex and centromeres are analysed.

    • Glennis A. Logsdon
    • Peter Ebert
    • Tobias Marschall
    ResearchOpen Access
    Nature
    Volume: 644, P: 430-441
  • It is demonstrated that the brain circuitry involved in regulating the motivation for physical activity is not strictly central nervous system autonomous but is shaped by peripheral influences that originate in the intestinal microbial community.

    • Lenka Dohnalová
    • Patrick Lundgren
    • Christoph A. Thaiss
    Research
    Nature
    Volume: 612, P: 739-747
  • An integrated, miniature (1.9 g) fluorescence microscope containing light source, optics and sensor allows high-speed, wide field of view imaging of calcium spiking in hundreds of neurons in freely moving mice. The mass-producible portable microscope is also useful for a variety of fluorescence assays for which size, cost and portability can be concerns.

    • Kunal K Ghosh
    • Laurie D Burns
    • Mark J Schnitzer
    Research
    Nature Methods
    Volume: 8, P: 871-878