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Showing 151–200 of 11906 results
Advanced filters: Author: Matthew C. Long Clear advanced filters
  • Emerging materials between molecules and materials demand new modeling approaches. Here, the authors present a localized active space approach that enables accurate and efficient band structure calculations to capture long-range charge and energy transfer in correlated materials.

    • Daniel S. King
    • Bhavnesh Jangid
    • Laura Gagliardi
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Typical quantum error correcting codes assign fixed roles to the underlying physical qubits. Now the performance benefits of alternative, dynamic error correction schemes have been demonstrated on a superconducting quantum processor.

    • Alec Eickbusch
    • Matt McEwen
    • Alexis Morvan
    ResearchOpen Access
    Nature Physics
    Volume: 21, P: 1994-2001
  • The practical performance of lithium–sulphur batteries is lower than expected because of polysulphide dissolution into the electrolyte over time. Sehet al. show that a yolk–shell nanoarchitecture is able to encapsulate sulphur cathode materials efficiently and thus allows over 1,000 charge/discharge cycles.

    • Zhi Wei Seh
    • Weiyang Li
    • Yi Cui
    Research
    Nature Communications
    Volume: 4, P: 1-6
  • The discovery of an unusual protist named Solarion arienae, which has a mitochondrial genome with some intriguing features, provides insight into the early radiation of eukaryotic groups.

    • Marek Valt
    • Tomáš Pánek
    • Ivan Čepička
    Research
    Nature
    Volume: 649, P: 388-395
  • A key component of quantum error correction is the decoding algorithm, which needs to be accurate but also with a computational overhead that doesn’t lead to backlogs and allows fast logical clock rates. Here, the authors show an FPGA-driven decoder featuring a coarse-grained parallel architecture and on-the-fly error model updates, allowing both high accuracy and real-time operation.

    • Abbas B. Ziad
    • Ankit Zalawadiya
    • Mark L. Turner
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • Neural circuits in adult mouse visual cortex are stabilized by astrocytes, which secrete CCN1, resulting in reduced plasticity and increased maturation of multiple cell types.

    • Laura Sancho
    • Matthew M. Boisvert
    • Nicola J. Allen
    ResearchOpen Access
    Nature
    Volume: 649, P: 948-958
  • Trends in global H2 sources and sinks are analysed from 1990 to 2020, and a comprehensive budget for the decade 2010–2020 is presented.

    • Zutao Ouyang
    • Robert B. Jackson
    • Andy Wiltshire
    ResearchOpen Access
    Nature
    Volume: 648, P: 616-624
  • Poly-ADP-ribose polymerase 1 (PARP1) plays key roles in DNA repair, transcription, and replication. Here, the authors used a single-molecule approach to reveal how PARP1 identifies DNA single-strand breaks in nucleosomes and how PARP1 activity regulates its DNA and chromatin binding kinetics.

    • Matthew A. Schaich
    • Tyler M. Weaver
    • Bennett Van Houten
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-16
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • H5N1 avian influenza viruses caused an outbreak in dairy cattle. We show that the potential for avian viruses to replicate in cow cells varies across H5N1 evolution, suggesting that the risk of spillover into mammals differs between variants.

    • Matthew L. Turnbull
    • Mohammad Khalid Zakaria
    • Massimo Palmarini
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-22
  • Scaling Si spin qubits relies on the uniform control of qubit-host interactions. This work finds correlations in qubit energy levels across a manufactured device arising from placement of Ge in the quantum well, consistent with atomistic modeling.

    • Jonathan C. Marcks
    • Emily Eagen
    • M. A. Eriksson
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

    • Yiqun Zhang
    • Fengju Chen
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • A mechanochemical protocol for the direct synthesis of organosodium compounds is developed using cheap and shelf-stable sodium lumps and readily available organic halides under bulk, solvent-free conditions. This approach allows for the generation of an array of organosodium compounds in minutes, without special precautions against moisture or temperature control.

    • Keisuke Kondo
    • Matthew Lowe
    • Hajime Ito
    ResearchOpen Access
    Nature Synthesis
    P: 1-11
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330
  • The potential roles of viruses in microbial-induced permafrost thaw, which is accelerated by climate change, are unclear. Here, Trubl et al. sample a permafrost thaw gradient and identify thousands of new viruses carrying genes with metabolic-related functions, which might influence the fate of stored carbon.

    • Gareth Trubl
    • Simon Roux
    • Virginia I. Rich
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-15
  • High-depth sequencing of non-cancerous tissue from patients with metastatic cancer reveals single-base mutational signatures of alcohol, smoking and cancer treatments, and reveals how exogenous factors, including cancer therapies, affect somatic cell evolution.

    • Oriol Pich
    • Sophia Ward
    • Nicholas McGranahan
    ResearchOpen Access
    Nature
    P: 1-11
  • Geminin regulates DNA replication by binding CDT1 and preventing MCM helicase loading. Using a reconstituted system and structural modelling, the authors find geminin inhibits via steric clash with MCM, not by blocking the CDT1–MCM interface. Combined with CDK activity, it fully halts licensing.

    • Joshua Tomkins
    • Lucy V. Edwardes
    • Christian Speck
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-23
  • Here, a combination of forward genetics and genome-wide association analyses has been used to show that variation at a single genetic locus in Arabidopsis thaliana underlies phenotypic variation in vegetative growth as well as resistance to infection. The strong enhancement of resistance mediated by one of the alleles at this locus explains the allele's persistence in natural populations throughout the world, even though it drastically reduces the production of new leaves.

    • Marco Todesco
    • Sureshkumar Balasubramanian
    • Detlef Weigel
    Research
    Nature
    Volume: 465, P: 632-636
  • The LGN is a critical stage between the retina and visual cortex, but the properties of human LGN neurons are not fully understood. Here the authors report that they closely resemble those in monkeys and that closure of one eye increases the activity of putative inhibitory neurons connected to that eye.

    • Matthew W. Self
    • Osvaldo Vilela-Filho
    • Pieter R. Roelfsema
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • Experimental measurements of high-order out-of-time-order correlators on a superconducting quantum processor show that these correlators remain highly sensitive to the quantum many-body dynamics in quantum computers at long timescales.

    • Dmitry A. Abanin
    • Rajeev Acharya
    • Nicholas Zobrist
    ResearchOpen Access
    Nature
    Volume: 646, P: 825-830
  • Accurately predicting the optimal pH level for enzyme activity is challenging due to the complex relationship between enzyme structure and function. Gado and colleagues show that a language model can effectively learn the structural and biophysical features to predict the optimal pH for enzyme activity.

    • Japheth E. Gado
    • Matthew Knotts
    • Gregg T. Beckham
    Research
    Nature Machine Intelligence
    Volume: 7, P: 716-729
  • Mu opioid receptor agonists with a preference for the non-GTP-bound state of the G protein promote GTP release, thereby potentiating antinociceptive effects of drugs such as morphine and fentanyl without also increasing their respiratory or cardiac effects.

    • Edward L. Stahl
    • Matthew A. Swanson
    • Laura M. Bohn
    ResearchOpen Access
    Nature
    P: 1-9
  • The endoplasmic-reticulum (ER) transmembrane protein IRE1 mitigates ER stress through kinase-ribonuclease and scaffolding activities. However, a significant nonenzymatic IRE1 dependency has been shown in cancer. Here, the authors design a proteolysis-targeting chimera (PROTAC) to fully disrupt cellular IRE1 protein, selectively blocking growth of IRE1-dependent cancer cells.

    • Jin Du
    • Elisia Villemure
    • Avi Ashkenazi
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Druckman et al. document gaps in trust in scientists in the USA. People from groups less represented among scientists (for example, women and those with lower economic status) are less trusting. Increasing the representation of these groups within science increases trust.

    • James N. Druckman
    • Katherine Ognyanova
    • David M. J. Lazer
    Research
    Nature Human Behaviour
    P: 1-16
  • Mass-wasting deposits that accumulated against mid-ocean ridge faults have high porosity in which calcium carbonate precipitated, storing seawater carbon dioxide, as revealed by cores of a 61-million-year-old seafloor talus deposit.

    • Rosalind M. Coggon
    • Elliot J. Carter
    • Trevor Williams
    ResearchOpen Access
    Nature Geoscience
    Volume: 18, P: 1279-1286
  • Some cancer patients first present with metastases where the location of the primary is unidentified; these are difficult to treat. In this study, using machine learning, the authors develop a method to determine the tissue of origin of a cancer based on whole sequencing data.

    • Wei Jiao
    • Gurnit Atwal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • An analysis of 24,202 critical cases of COVID-19 identifies potentially druggable targets in inflammatory signalling (JAK1), monocyte–macrophage activation and endothelial permeability (PDE4A), immunometabolism (SLC2A5 and AK5), and host factors required for viral entry and replication (TMPRSS2 and RAB2A).

    • Erola Pairo-Castineira
    • Konrad Rawlik
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 617, P: 764-768
  • Mismatch repair pathway is frequently dysregulated across cancer types, commonly represented by loss of MLH1 or MSH2 gene expression. Here the authors model MLH1 missense mutations from patients to study how cytoplasmic localization of MLH1, promotes resistance to endocrine therapy but predicts response to cell cycle inhibitors in breast cancer.

    • Aloran Mazumder
    • Jerry Dewitt
    • Svasti Haricharan
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-19
  • How to effectively communicate climate change to the public has long been studied and debated. Through a registered report megastudy, researchers tested the ten most-cited climate change messaging strategies published, finding that many had significant, but small, effects on climate change attitudes.

    • Jan G. Voelkel
    • Ashwini Ashokkumar
    • Robb Willer
    Research
    Nature Climate Change
    P: 1-12
  • A combination of genome-wide functional screening, imaging and chromatin profiling identifies a new class of highly prevalent genomic elements that help retain extrachromosomal DNA copies in dividing cells and persist across generations.

    • Venkat Sankar
    • King L. Hung
    • Howard Y. Chang
    ResearchOpen Access
    Nature
    Volume: 649, P: 152-160
  • Here, the authors present a deep learning framework trained on nearly one million direct current fast charging sessions that accurately predicts electric vehicle charging profiles and the remaining driving time. The model provides the predictions in real time from minimal input, improving user experience, energy planning, and infrastructure reliability.

    • Siyi Li
    • Mingrui Zhang
    • Matthew D. Piggott
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Femtosecond photoexcitation drives a coherent twist–untwist motion of the moiré superlattice in 2° and 57° twisted WSe2/MoSe2 heterobilayers.

    • Cameron J. R. Duncan
    • Amalya C. Johnson
    • Fang Liu
    Research
    Nature
    Volume: 647, P: 619-624
  • This study uses data-driven modelling to predict a 24–91% increase in methane emissions from global lakes and reservoirs by 2080–2099 under various climate scenarios. Temperature and seasonality changes are key drivers, highlighting the need for climate action.

    • David Bastviken
    • Matthew S. Johnson
    ResearchOpen Access
    Nature Water
    Volume: 3, P: 1397-1410
  • PU.1low CD28-expressing microglia may act as suppressive cells in Alzheimer’s disease, mitigating its progression by reducing neuroinflammation and amyloid plaque load, indicating potential immunotherapeutic approaches for treatment.

    • Pinar Ayata
    • Jessica M. Crowley
    • Anne Schaefer
    ResearchOpen Access
    Nature
    Volume: 648, P: 157-165