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Showing 1–50 of 141 results
Advanced filters: Author: Xinyue Zhu Clear advanced filters
  • The longevity of leaves determines the overall duration of photosynthesis for plants. This study suggests that climate change drives leaf longevity convergence toward intermediate ranges, which, by altering leaf traits and enhancing photosynthetic capacity, strengthens ecosystem stability and is closely linked to vegetation diversity.

    • Meimei Xue
    • Xueqin Yang
    • Chaoyang Wu
    ResearchOpen Access
    Nature Communications
    P: 1-13
  • SARS-CoV-2 variants often exhibit immune evasion, necessitating antiviral strategies beyond vaccination. This study presents a papain-like protease (PLpro) inhibitor called YL1004, which exhibits potent, broad-spectrum antiviral activity against wild-type, Delta, and Omicron variants in vitro and in vivo.

    • Jinshan Nan
    • Huiping Shuai
    • Shengyong Yang
    ResearchOpen Access
    Nature Communications
    P: 1-14
  • Cell-cell adhesion plays critical roles in maintaining and regulating cellular functions. Here, authors present a diffusive N-cadherin functionalized hydrogel that provides cell-cell adhesion cues to modulate intercellular communication to promote neural regeneration for treatment of traumatic brain injury.

    • Xiaoxuan Tang
    • Shuxuan Zhang
    • Yumin Yang
    ResearchOpen Access
    Nature Communications
    P: 1-18
  • Elebsiran plus PEG-IFNα improved hepatitis B surface antigen (HBsAg) loss rates compared with PEG-IFNα alone in patients with chronic hepatitis B virus infection. Furthermore, prior response to the BRII-179 vaccine was associated with higher HBsAg clearance, suggesting its potential as a predictive tool for identifying patients more likely to benefit from therapies.

    • Grace Lai-Hung Wong
    • Man-Fung Yuen
    • Zhi Hong
    ResearchOpen Access
    Nature Medicine
    Volume: 32, P: 151-159
  • T cells have been shown to have a function in chronic lung inflammation in COPD. Here the authors characterise the single cell transcriptional profile of T cells after smoke inhalation in mouse models showing changes in TCR repertoire and Il17a expression in γδ T cells, suggesting smoke-associated γδ T cells are involved in COPD inflammation and implicating γδT17 cells as a possible target for early prevention and treatment of COPD.

    • Xinyue Mei
    • Junxiang Wang
    • Pixin Ran
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-13
  • Serotonin (5-HT) and its derivative melatonin are versatile physiological regulators. Here, the authors report that abscisic acid induces 5-HT biosynthesis via the ABI5 transcription factor in rice.

    • Yuanjiang Cui
    • Xinyue Hou
    • Deyong Ren
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • Powering single organic electrochemical transistor (OECT) device is challenging as power reductions can cause unstable device outputs. Wu et al. report a wearable, self-powered biosensor with a dual-OECT amplifier powered by an organic solar cell for monitoring physiological signals under varying light conditions.

    • Qiang Wu
    • Shijie Wang
    • Wei Ma
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

    • Yiqun Zhang
    • Fengju Chen
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Azetidine is a pharmacophore present in drug-related molecules. Here the authors unveil a two-metalloenzyme cascade leading to the azetidine-containing polyoximic acid, in which PolE functions as an Fe2+/pterin-dependent l-isoleucine desaturase, while PolF is a haem-oxygenase-like diiron oxidase, orchestrating the sequential desaturation and cyclization. These findings expand our knowledge of metalloenzymes.

    • Rong Gong
    • Yao Qu
    • Wenqing Chen
    Research
    Nature Chemistry
    P: 1-10
  • Use of ether-based electrolytes in Na-ion batteries is challenged with oxidation at high voltages. Here, authors report passivation of vulnerable ether solvents, enabling cathode electrolyte interphase enriched with NaF and NaNxOy and elevating the oxidation resistance of the electrolyte to 4.8 V.

    • Xingyu Wang
    • Qi Fan
    • Hui Xia
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • Biomaterials exerting osteoblast over fibroblast selectivity are promising for overcoming fibrotic encapsulation and promoting osseointegration at the implant interface, but remain underdeveloped. Here, the authors report amphiphilic β-amino acid polymers that exhibit selectivity for osteoblasts over fibroblasts, outperforming the natural osteoblast-selective peptide.

    • Qi Chen
    • Jiawei Gu
    • Runhui Liu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

    • Moritz Gerstung
    • Clemency Jolly
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 122-128
  • Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

    • Marta Paczkowska
    • Jonathan Barenboim
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Some cancer patients first present with metastases where the location of the primary is unidentified; these are difficult to treat. In this study, using machine learning, the authors develop a method to determine the tissue of origin of a cancer based on whole sequencing data.

    • Wei Jiao
    • Gurnit Atwal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

    • Yulia Rubanova
    • Ruian Shi
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Residue-free water disinfection is vital for safe drinking water. Here the authors develop an electrochemical system for microbial eradication by employing a dual-mode mechanism and a dynamic “live microbe capture–killing–dead microbe desorption” process for continuous and effective disinfection.

    • Yong Liu
    • Lihao Wang
    • Xun Yuan
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-11
  • Peptide aldehydes are an important class of biomolecules, playing essential roles in various living systems, and there is an ongoing demand for the efficient synthesis of peptide aldehydes. Herein, the authors report the electrooxidative ring-opening reaction via C‒N bond cleavage for the synthesis of unnatural peptide aldehydes.

    • Xinyue Fang
    • Yong Zeng
    • Zhixiong Ruan
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-10
  • Cycling positive electrodes at high voltages leads to structural instability and capacity decay. Here, authors report a cationic defective electrode, Na3.20.8Co0.5Fe0.5V(PO3.9F0.1)3, through fluorine doping with enhanced stability, reversible capacity, and fast Na+ (de)intercalation.

    • Jingrong Hou
    • Tsung‐Yi Chen
    • Jiwei Ma
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • Investigating metabolic disturbances in coronary artery disease (CAD) may allow the identifications of new prognostic biomarkers. Here the authors perform a metabolomics study to highlight the shared and distinct metabolites characterizing risks of several cardiovascular events in CAD patients.

    • Jiali Lv
    • Chang Pan
    • Yuguo Chen
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • Achieving collimation of high-energy, high-flux proton beams relies on complex target fabrication and precise control of auxiliary laser pulses. Here, the authors demonstrate an all-optical method for collimated proton acceleration using a single femtosecond Laguerre–Gaussian (LG), enhancing the proton energy by 60% and using a simple planar target.

    • Wenpeng Wang
    • Xinyue Sun
    • Zhizhan Xu
    ResearchOpen Access
    Communications Physics
    Volume: 8, P: 1-8