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Showing 1–50 of 1628 results
Advanced filters: Author: Jacob Bar Clear advanced filters
  • Polyamides (PAs) or nylons are types of plastics with wide applications, but due to their accumulation in the environment, strategies for their deconstruction are of interest. Here, the authors screen 40 potential nylon-hydrolyzing enzymes (nylonases) using a mass spectrometry-based approach and identify a thermostabilized N-terminal nucleophile hydrolase as the most promising for further development, as well as crucial targets for progressing PA6 enzymatic depolymerization.

    • Elizabeth L. Bell
    • Gloria Rosetto
    • Gregg T. Beckham
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-17
  • EGFR inhibitors are standard of care in patients with EGFR-mutant non-small cell lung cancer (NSCLC) but resistance often develops. Here the authors report that the evolution of EGFR inhibitor resistance in EGFR-mutant NSCLC results in a sensitivity to the compound, MCB-613, and investigate the underlying mechanism of action.

    • Christopher F. Bassil
    • Kerry Dillon
    • Kris C. Wood
    ResearchOpen Access
    Nature Communications
    P: 1-20
  • An algorithm that combines deep learning, Bayesian optimization and computer vision techniques can be used to autonomously tune a semiconductor spin qubit from a grounded device to Rabi oscillations.

    • Jonas Schuff
    • Miguel J. Carballido
    • Natalia Ares
    ResearchOpen Access
    Nature Electronics
    P: 1-10
  • Activity-based protein profiling identifies covalent small molecules that potentiate the activity of the METTL5:TRMT112 complex through binding to a complexoform-restricted allosteric pocket absent in other TRMT112:methyltransferase complexes

    • F. Wieland Goetzke
    • Steffen M. Bernard
    • Benjamin F. Cravatt
    ResearchOpen Access
    Nature Chemical Biology
    P: 1-13
  • A survey of the reconstructed gene set of the last eukaryotic common ancestor shows a consistent link between Asgard archaea and the origin of numerous, functionally diverse eukaryotic genes, demonstrating the dominant Asgard contribution to eukaryogenesis.

    • Victor Tobiasson
    • Jacob Luo
    • Eugene V. Koonin
    ResearchOpen Access
    Nature
    Volume: 650, P: 141-149
  • Break-induced replication (BIR) repairs broken DNA but can also destabilize genomes. The authors identify 33 new genes controlling BIR completion, showing that spindle assembly and spindle positioning checkpoints coordinate repair, and that nuclear pore proteins regulate BIR at multiple steps.

    • Liping Liu
    • Rosemary S. Lee
    • Anna Malkova
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-16
  • Qudits can encode a richer class of topologically ordered states, which are promising for quantum information, but experimental realizations have been limited to qubits. Here, the authors report a study of a qutrit toric code on a trapped-ion quantum computer.

    • Mohsin Iqbal
    • Anasuya Lyons
    • Henrik Dreyer
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-8
  • Inhibitors of the protein kinase Wee1 are promising drugs for cancer therapy. Here, the authors show that these drugs activate the integrated stress response via GCN2, synergising with mRNA translation defects. They suggest strategies such as PROTACs or ISR inhibitors to improve WEE1 mediated toxicity.

    • Jordan C. J. Wilson
    • JiaYi Zhu
    • Stephen P. Jackson
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Population-scale WGS reveals genetic determinants of persistent EBV DNA, linking immune regulation—especially antigen processing and MHC class II variation—to EBV persistence and heterogeneous disease associations.

    • Sherry S. Nyeo
    • Erin M. Cumming
    • Caleb A. Lareau
    ResearchOpen Access
    Nature
    P: 1-9
  • Diamonds provide a window into deep Earth processes and can be used to understand the deep carbon cycle. Here, Jacob et al. show that diamond precipitation can be triggered by the oxidation of pyrrhotite to magnetite at the base of a cratonic lithosphere, providing insight into diamond formation.

    • Dorrit E. Jacob
    • Sandra Piazolo
    • Patrick Trimby
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-7
  • A randomized field study in rural western Kenya, a region most vulnerable to the health impacts of climate change, found that modifying houses with cool-roofs and vector proofing most effectively reduced indoor heat, improved thermal comfort and lowered malaria mosquito density.

    • Bernard Abong’o
    • Daniel Kwaro
    • Martina Anna Maggioni
    ResearchOpen Access
    Nature Medicine
    P: 1-9
  • In this work, researchers show how laser annealing is used to create complex 2D gradients in magnetic properties, which can steer spin waves and domain walls. This fast, maskless method enables the development of next-generation computing devices.

    • Lauren J. Riddiford
    • Jeffrey A. Brock
    • Laura J. Heyderman
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • Federated learning (FL) algorithms have emerged as a promising solution to train models for healthcare imaging across institutions while preserving privacy. Here, the authors describe the Federated Tumor Segmentation (FeTS) challenge for the decentralised benchmarking of FL algorithms and evaluation of Healthcare AI algorithm generalizability in real-world cancer imaging datasets.

    • Maximilian Zenk
    • Ujjwal Baid
    • Spyridon Bakas
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • The variability in clinical outcomes of SARS-CoV-2 infection is partly due to deficiencies in production or response to type I interferons (IFN). Here, the authors describe a FIP200-dependent lysosomal degradation pathway, independent of canonical autophagy and type I IFN, that restricts SARS-CoV-2 replication, offering insights into critical COVID-19 pneumonia mechanisms.

    • Lili Hu
    • Renee M. van der Sluis
    • Trine H. Mogensen
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-23
  • To what extent regeneration recapitulates embryonic development is a longstanding question. Here, they show that embryonic gene modules are re-used, rewired, and interconnected to specific injury-induced down-stream targets during regeneration.

    • Rita Andreoni-Pham
    • Hereroa Johnston
    • Eric Röttinger
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-22
  • Wastewater-based surveillance tends to focus on specific pathogens. Here, the authors mapped the wastewater virome from 62 cities worldwide to identify over 2,500 viruses, revealing city-specific virome fingerprints and showing that wastewater metagenomics enables early detection of emerging viruses.

    • Nathalie Worp
    • David F. Nieuwenhuijse
    • Miranda de Graaf
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • Yakut communities, with Trans-Baikal admixture during the Mongol expansion, preserved genomic diversity and oral microbiomes despite the Russian conquest, which introduced cereals, pathogens and Christianity, whereas marital practices preserved low consanguinity except in one late case of traditional shamanism.

    • Éric Crubézy
    • Perle Guarino-Vignon
    • Ludovic Orlando
    ResearchOpen Access
    Nature
    P: 1-10
  • Familial adenomatous polyposis (FAP) is an inherited gastrointestinal syndrome associated with duodenal adenoma formation. Here the authors show that IL17A-producing NKp44- group 3 innate lymphoid cells accumulate in FAP duodenal tissue and are associated with duodenal adenoma formation in patients with FAP.

    • Kim M. Kaiser
    • Jan Raabe
    • Jacob Nattermann
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • The mechanism(s) controlling CD8+ virtual memory T cell (TVM) development are still under investigation. Here, using uninfected or IAV-challenged Ikzf3-deficient mice, the authors identify the transcription factor Aiolos as a negative regulator of TVM cell development by repressing Eomes and IL-15/STAT5 signaling.

    • Srijana Pokhrel
    • Gayathri Dileepan
    • Kenneth J. Oestreich
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-17
  • Mendelian genetics posits equal transmission of alleles, but selfish alleles can bias the transmission of large genomic regions or entire chromosomes. This study reveals the evolution of large amplicons as a distinct genetic feature of chromosomes with selfish alleles.

    • Callie M. Swanepoel
    • Gaojianyong Wang
    • Jacob L. Mueller
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-13
  • Tau misfolds in Alzheimer’s disease, but how the link between tau filament structure and pathogenicity is unclear. This study shows that both filament core structure and phosphorylation in the fuzzy coat are required for full seeding capacity.

    • Alysa Kasen
    • Sofia Lövestam
    • Michael X. Henderson
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • The cell death effector Gasdermin A is only known to be activated by Streptococcus pyogenes. This work discovers a mechanism for its activation by Staphylococcus aureus, and shows a conserved role in immunity against invasive skin pathogens

    • Doris L. LaRock
    • Jacob D. Sherman
    • Christopher N. LaRock
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • Genomic analyses applied to 14 childhood- and adult-onset psychiatric disorders identifies five underlying genomic factors that explain the majority of the genetic variance of the individual disorders.

    • Andrew D. Grotzinger
    • Josefin Werme
    • Jordan W. Smoller
    ResearchOpen Access
    Nature
    Volume: 649, P: 406-415
  • A common mechanism by which cancer cells acquire resistance to chemotherapeutics is through the overexpression of efflux pumps, but platinum anticancer agents that crosslink DNA and interact with proteins are poor efflux pump substrates. Here, the authors design dual warhead drug conjugates by tethering a platinum pharmacophore to the doxorubicin backbone, which exhibit the activity of both parent anticancer compounds and can overcome drug efflux effectively due to covalent binding to intracellular biomolecules.

    • Fang Wang
    • Jonathan Braverman
    • Ömer H. Yilmaz
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-10
  • High-resolution imaging mass cytometry attains subcellular resolution through a combination of oversampling and deconvolution and enables highly multiplex imaging of subcellular structures such as nuclear foci and mitochondrial networks.

    • Alina Bollhagen
    • James Whipman
    • Bernd Bodenmiller
    ResearchOpen Access
    Nature Methods
    Volume: 22, P: 2601-2608
  • Sequencing of 144 ancient genomes from Shimao city and its satellites presents pedigrees among tomb owners spanning up to four generations showing predominantly patrilineal descent structure across Shimao communities, and possibly sex-specific sacrificial rituals.

    • Zehui Chen
    • Jacob D. Gardner
    • Qiaomei Fu
    ResearchOpen Access
    Nature
    Volume: 648, P: 659-667
  • Post-acute sequelae of SARS-CoV-2 (PASC) have been linked to brain alterations, but association with cognitive problems are not well understood. Here, the authors analyze blood proteins and brain MRI data one year after mild COVID-19, revealing distinct neurodegenerative processes in PASC patients with cognitive problems, such as cortical thinning, brain iron deposition, enlarged choroid plexus, and increased blood neuronal/glial injury markers, compared to other-PASC.

    • Dayoung Seo
    • Yangsean Choi
    • Sung-Han Kim
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • Intercellular calcium waves drive numerous biological processes. Here light-activated molecular machines that—via nanomechanical action—stimulate ICW are reported, opening up avenues for the modulation of downstream biological processes using molecular-scale devices.

    • Jacob L. Beckham
    • Alexis R. van Venrooy
    • James M. Tour
    Research
    Nature Nanotechnology
    Volume: 18, P: 1051-1059
  • Proximity-ligation-based sequencing from 111 samples and 5 environments reveals that a substantial proportion of phages infect multiple species.

    • Amaury Bignaud
    • Devon E. Conti
    • Martial Marbouty
    Research
    Nature Microbiology
    Volume: 10, P: 2537-2549
  • A high-resolution transcriptomic and epigenomic cell-type atlas of the developing mouse visual cortex from embryonic to postnatal development is presented, providing a real-time dynamic molecular map associated with individual cell types and specific developmental events.

    • Yuan Gao
    • Cindy T. J. van Velthoven
    • Hongkui Zeng
    ResearchOpen Access
    Nature
    Volume: 647, P: 127-142
  • Josephson junctions are used for SQUIDs, voltage standards, and superconducting qubits. These applications are located at one corner of the device parameter space. Here, the authors shed light on the other corner and show the quantized current of Josephson junctions — dual to the quantized voltage.

    • Rais S. Shaikhaidarov
    • Kyung Ho Kim
    • Oleg V. Astafiev
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-6
  • Duan and Kaushik et al. reveal the structural basis of how Escherichia coli and Thermus thermophilus RNA polymerases initiate transcription from Np4A alarmones producing Np4-capped transcripts. The caps form various interactions with a polymerase during initial steps, influencing capping efficiency.

    • Wenqian Duan
    • Abhishek Kaushik
    • Alexander Serganov
    Research
    Nature Chemical Biology
    P: 1-11
  • Understanding of the immune microenvironment in pediatric acute T cell lymphoblastic leukemia is limited. By analyzing single-cell transcriptome, surface protein expression and immune repertoire data, the authors here identify non-malignant CD4-CD8- TCRαβ T cells that are present in a subset of patients with Rap1 signaling in leukemia cells and are associated with adverse clinical outcome in patients with low minimal residual disease.

    • Caroline R. M. Wiggers
    • Eugene Y. Cho
    • Birgit Knoechel
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19